FFCP PHASE1:Hg19::chr5:35617940..35618050,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=79925 | |EntrezGene=79925 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26293 | |HGNC=26293 | ||
|TSSclassifier=strong | |||
|UniProt=Q9C093,D6RD80,D6REZ4,D6RGZ5 | |UniProt=Q9C093,D6RD80,D6REZ4,D6RGZ5 | ||
|association_with_transcript=0bp_to_ENST00000282469,ENST00000356031,ENST00000505088,ENST00000505847,ENST00000509059,ENST00000510777,NM_024867,NM_144722,uc003jjn.1,uc003jjo.2,uc003jjq.3_5end | |association_with_transcript=0bp_to_ENST00000282469,ENST00000356031,ENST00000505088,ENST00000505847,ENST00000509059,ENST00000510777,NM_024867,NM_144722,uc003jjn.1,uc003jjo.2,uc003jjq.3_5end | ||
|cluster_id=chr5:35617940..35618050,+ | |||
|description=CAGE_peak_1_at_SPEF2_5end | |description=CAGE_peak_1_at_SPEF2_5end | ||
|id=chr5:35617940..35618050,+ | |id=chr5:35617940..35618050,+ | ||
|ontology_enrichment_celltype=CL:0000625!1.72e-07!11;CL:0000791!4.50e-07!18;CL:0000789!4.50e-07!18;CL:0002420!4.50e-07!18;CL:0002419!4.50e-07!18;CL:0000790!4.50e-07!18 | |ontology_enrichment_celltype=CL:0000625!1.72e-07!11;CL:0000791!4.50e-07!18;CL:0000789!4.50e-07!18;CL:0002420!4.50e-07!18;CL:0002419!4.50e-07!18;CL:0000790!4.50e-07!18 | ||
|ontology_enrichment_celltype_v019=CL:0000625;1.23e-07;11!CL:0000791;2.58e-07;18!CL:0000789;2.58e-07;18!CL:0002419;2.58e-07;18 | |ontology_enrichment_celltype_v019=CL:0000625;1.23e-07;11!CL:0000791;2.58e-07;18!CL:0000789;2.58e-07;18!CL:0002419;2.58e-07;18 | ||
|ontology_enrichment_celltype_v019_2=CL:0000625,1.38e-07,11;CL:0000791,2.67e-07,18;CL:0000789,2.67e-07,18;CL:0002420,2.67e-07,18;CL:0002419,2.67e-07,18;CL:0000790,2.67e-07,18 | |||
|ontology_enrichment_development_v019=CL:0000790;2.58e-07;18 | |ontology_enrichment_development_v019=CL:0000790;2.58e-07;18 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.31e-25!115;UBERON:0001049!2.76e-16!57;UBERON:0005068!2.76e-16!57;UBERON:0006241!2.76e-16!57;UBERON:0007135!2.76e-16!57;UBERON:0003080!1.06e-14!42;UBERON:0002780!1.07e-14!41;UBERON:0001890!1.07e-14!41;UBERON:0006240!1.07e-14!41;UBERON:0002616!2.07e-13!59;UBERON:0000955!4.72e-12!69;UBERON:0006238!4.72e-12!69;UBERON:0001869!8.05e-12!32;UBERON:0001893!1.09e-11!34;UBERON:0002020!1.32e-11!34;UBERON:0003528!1.32e-11!34;UBERON:0003075!2.79e-11!86;UBERON:0007284!2.79e-11!86;UBERON:0002791!2.84e-11!33;UBERON:0001017!4.32e-11!82;UBERON:0005743!7.06e-11!86;UBERON:0002619!1.52e-10!22;UBERON:0002346!4.60e-10!90;UBERON:0001950!4.72e-10!20;UBERON:0000073!2.54e-09!94;UBERON:0001016!2.54e-09!94;UBERON:0000956!4.63e-09!25;UBERON:0000203!4.63e-09!25;UBERON:0003056!2.38e-08!61 | |ontology_enrichment_uberon=UBERON:0007023!2.31e-25!115;UBERON:0001049!2.76e-16!57;UBERON:0005068!2.76e-16!57;UBERON:0006241!2.76e-16!57;UBERON:0007135!2.76e-16!57;UBERON:0003080!1.06e-14!42;UBERON:0002780!1.07e-14!41;UBERON:0001890!1.07e-14!41;UBERON:0006240!1.07e-14!41;UBERON:0002616!2.07e-13!59;UBERON:0000955!4.72e-12!69;UBERON:0006238!4.72e-12!69;UBERON:0001869!8.05e-12!32;UBERON:0001893!1.09e-11!34;UBERON:0002020!1.32e-11!34;UBERON:0003528!1.32e-11!34;UBERON:0003075!2.79e-11!86;UBERON:0007284!2.79e-11!86;UBERON:0002791!2.84e-11!33;UBERON:0001017!4.32e-11!82;UBERON:0005743!7.06e-11!86;UBERON:0002619!1.52e-10!22;UBERON:0002346!4.60e-10!90;UBERON:0001950!4.72e-10!20;UBERON:0000073!2.54e-09!94;UBERON:0001016!2.54e-09!94;UBERON:0000956!4.63e-09!25;UBERON:0000203!4.63e-09!25;UBERON:0003056!2.38e-08!61 | ||
|ontology_enrichment_uberon_v019=UBERON:0002780;5.66e-11;41!UBERON:0001890;5.66e-11;41!UBERON:0001869;6.44e-11;32!UBERON:0002619;1.03e-10;22!UBERON:0003528;1.24e-10;34!UBERON:0002020;1.24e-10;34!UBERON:0001893;1.87e-10;34!UBERON:0002791;2.00e-10;32!UBERON:0001950;3.09e-10;20!UBERON:0000073;1.09e-09;53!UBERON:0002616;1.09e-09;53!UBERON:0000956;2.62e-09;25!UBERON:0000203;2.62e-09;25!UBERON:0007023;7.16e-08;114 | |ontology_enrichment_uberon_v019=UBERON:0002780;5.66e-11;41!UBERON:0001890;5.66e-11;41!UBERON:0001869;6.44e-11;32!UBERON:0002619;1.03e-10;22!UBERON:0003528;1.24e-10;34!UBERON:0002020;1.24e-10;34!UBERON:0001893;1.87e-10;34!UBERON:0002791;2.00e-10;32!UBERON:0001950;3.09e-10;20!UBERON:0000073;1.09e-09;53!UBERON:0002616;1.09e-09;53!UBERON:0000956;2.62e-09;25!UBERON:0000203;2.62e-09;25!UBERON:0007023;7.16e-08;114 | ||
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| ||
|short_description=p1@SPEF2 | |short_description=p1@SPEF2 | ||
}} | }} |
Latest revision as of 18:22, 17 September 2015
Short description: | p1@SPEF2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SPEF2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000282469, ENST00000356031, ENST00000505088, ENST00000505847, ENST00000509059, ENST00000510777, NM_024867, NM_144722, uc003jjn.1, uc003jjo.2, uc003jjq.3_5end |
EntrezGene: | SPEF2 |
HGNC: | 26293 |
UniProt: | Q9C093D6RD80D6REZ4D6RGZ5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD8-positive, alpha-beta T cell | 1.38e-07 | 11 |
mature alpha-beta T cell | 2.67e-07 | 18 |
alpha-beta T cell | 2.67e-07 | 18 |
immature T cell | 2.67e-07 | 18 |
mature T cell | 2.67e-07 | 18 |
immature alpha-beta T cell | 2.67e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
adult organism | 5.83e-25 | 114 |
neural tube | 2.04e-16 | 56 |
neural rod | 2.04e-16 | 56 |
future spinal cord | 2.04e-16 | 56 |
neural keel | 2.04e-16 | 56 |
regional part of nervous system | 1.11e-15 | 53 |
regional part of brain | 1.11e-15 | 53 |
regional part of forebrain | 6.53e-15 | 41 |
forebrain | 6.53e-15 | 41 |
anterior neural tube | 6.53e-15 | 41 |
future forebrain | 6.53e-15 | 41 |
brain | 3.34e-12 | 68 |
future brain | 3.34e-12 | 68 |
cerebral hemisphere | 5.46e-12 | 32 |
telencephalon | 7.45e-12 | 34 |
brain grey matter | 9.06e-12 | 34 |
gray matter | 9.06e-12 | 34 |
central nervous system | 3.11e-11 | 81 |
regional part of telencephalon | 3.83e-11 | 32 |
neural plate | 6.91e-11 | 82 |
presumptive neural plate | 6.91e-11 | 82 |
regional part of cerebral cortex | 1.09e-10 | 22 |
neocortex | 3.43e-10 | 20 |
nervous system | 8.72e-10 | 89 |
neurectoderm | 1.49e-09 | 86 |
organ system subdivision | 2.19e-09 | 223 |
cerebral cortex | 3.49e-09 | 25 |
pallium | 3.49e-09 | 25 |
pre-chordal neural plate | 8.14e-09 | 61 |
structure with developmental contribution from neural crest | 8.37e-08 | 132 |
ecto-epithelium | 2.55e-07 | 104 |