FFCP PHASE1:Hg19::chr1:156786634..156786648,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9047 | |EntrezGene=9047 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10821 | |HGNC=10821 | ||
|TSSclassifier=strong | |||
|UniProt=Q5UBZ2,Q5VZS4,Q9NP31 | |UniProt=Q5UBZ2,Q5VZS4,Q9NP31 | ||
|association_with_transcript=0bp_to_ENST00000392306,NM_001161441,NM_001161442,NM_001161444,NM_003975,uc001fqd.2,uc001fqe.2,uc009wsh.2,uc010phs.1_5end | |association_with_transcript=0bp_to_ENST00000392306,NM_001161441,NM_001161442,NM_001161444,NM_003975,uc001fqd.2,uc001fqe.2,uc009wsh.2,uc010phs.1_5end | ||
|cluster_id=chr1:156786634..156786648,- | |||
|coexpression_cluster_id=C69 | |||
|description=CAGE_peak_3_at_SH2D2A_5end | |description=CAGE_peak_3_at_SH2D2A_5end | ||
|id=chr1:156786634..156786648,- | |id=chr1:156786634..156786648,- | ||
|ontology_enrichment_celltype=CL:0000988!3.08e-30!182;CL:0000037!5.41e-30!172;CL:0000566!5.41e-30!172;CL:0002032!4.67e-29!165;CL:0000837!4.67e-29!165;CL:0000738!1.05e-22!140;CL:0000084!2.05e-21!25;CL:0000827!2.05e-21!25;CL:0002087!5.54e-21!119;CL:0002031!1.48e-20!124;CL:0000542!1.17e-17!53;CL:0000051!1.17e-17!53;CL:0000838!4.12e-17!52;CL:0000791!1.07e-15!18;CL:0000789!1.07e-15!18;CL:0002420!1.07e-15!18;CL:0002419!1.07e-15!18;CL:0000790!1.07e-15!18;CL:0000763!1.36e-12!112;CL:0000049!1.36e-12!112;CL:0000625!2.52e-10!11;CL:0002057!1.84e-09!42;CL:0000860!8.24e-09!45;CL:0000839!9.08e-07!70 | |ontology_enrichment_celltype=CL:0000988!3.08e-30!182;CL:0000037!5.41e-30!172;CL:0000566!5.41e-30!172;CL:0002032!4.67e-29!165;CL:0000837!4.67e-29!165;CL:0000738!1.05e-22!140;CL:0000084!2.05e-21!25;CL:0000827!2.05e-21!25;CL:0002087!5.54e-21!119;CL:0002031!1.48e-20!124;CL:0000542!1.17e-17!53;CL:0000051!1.17e-17!53;CL:0000838!4.12e-17!52;CL:0000791!1.07e-15!18;CL:0000789!1.07e-15!18;CL:0002420!1.07e-15!18;CL:0002419!1.07e-15!18;CL:0000790!1.07e-15!18;CL:0000763!1.36e-12!112;CL:0000049!1.36e-12!112;CL:0000625!2.52e-10!11;CL:0002057!1.84e-09!42;CL:0000860!8.24e-09!45;CL:0000839!9.08e-07!70 | ||
|ontology_enrichment_celltype_v019=CL:0000084;3.68e-38;25!CL:0000791;2.70e-29;18!CL:0000789;2.70e-29;18!CL:0002419;2.70e-29;18!CL:0000625;1.09e-18;11!CL:0000542;1.94e-14;53!CL:0000624;2.92e-10;6!CL:0000988;1.05e-07;177!CL:0002087;3.98e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,1.69e-38,25;CL:0000827,1.69e-38,25;CL:0000791,1.69e-29,18;CL:0000789,1.69e-29,18;CL:0002420,1.69e-29,18;CL:0002419,1.69e-29,18;CL:0000790,1.69e-29,18;CL:0000988,4.07e-29,177;CL:0000838,9.64e-29,52;CL:0000542,5.17e-28,53;CL:0000051,5.17e-28,53;CL:0000037,1.79e-27,168;CL:0002032,7.11e-27,161;CL:0000837,7.11e-27,161;CL:0002087,1.19e-19,115;CL:0002031,1.38e-19,120;CL:0000625,7.41e-19,11;CL:0000738,6.82e-18,136;CL:0000624,2.69e-10,6 | |||
|ontology_enrichment_development_v019=CL:0000790;2.70e-29;18!CL:0000051;1.94e-14;53 | |||
|ontology_enrichment_disease=DOID:2531!1.51e-12!51;DOID:0060083!1.51e-12!51;DOID:1240!2.40e-12!39;DOID:1036!4.23e-09!8;DOID:8692!1.29e-07!31 | |ontology_enrichment_disease=DOID:2531!1.51e-12!51;DOID:0060083!1.51e-12!51;DOID:1240!2.40e-12!39;DOID:1036!4.23e-09!8;DOID:8692!1.29e-07!31 | ||
|ontology_enrichment_disease_v019=DOID:1036;1.82e-16;8!DOID:1240;8.49e-13;39!DOID:2531;1.30e-11;51!DOID:0060083;1.30e-11;51!DOID:8692;1.48e-10;31 | |||
|ontology_enrichment_disease_v019_2=DOID:1036,1.94e-16,8;DOID:2531,2.34e-16,51;DOID:0060083,2.34e-16,51;DOID:1240,2.74e-15,39;DOID:8692,1.03e-10,31 | |||
|ontology_enrichment_uberon=UBERON:0007023!2.58e-13!115;UBERON:0002390!3.92e-12!102;UBERON:0003061!3.92e-12!102;UBERON:0002193!8.05e-11!112;UBERON:0000178!9.38e-11!15;UBERON:0000179!9.38e-11!15;UBERON:0000463!9.38e-11!15 | |ontology_enrichment_uberon=UBERON:0007023!2.58e-13!115;UBERON:0002390!3.92e-12!102;UBERON:0003061!3.92e-12!102;UBERON:0002193!8.05e-11!112;UBERON:0000178!9.38e-11!15;UBERON:0000179!9.38e-11!15;UBERON:0000463!9.38e-11!15 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;8.00e-16;15!UBERON:0000179;8.00e-16;15!UBERON:0000463;8.00e-16;15!UBERON:0002390;4.14e-12;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,3.86e-16,15;UBERON:0000179,3.86e-16,15;UBERON:0000463,3.86e-16,15;UBERON:0002390,4.08e-10,98;UBERON:0003061,4.08e-10,98;UBERON:0002193,3.22e-09,108;UBERON:0004177,3.41e-09,7;UBERON:0005057,3.41e-09,7;UBERON:0002370,1.75e-08,4;UBERON:0005058,1.75e-08,4;UBERON:0009113,1.75e-08,4;UBERON:0003295,1.75e-08,4;UBERON:0005562,1.75e-08,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.06316195519468,1.88831355734875,2.04648031415566,0.393364276848904,0.767658796194425,0.309632246632152,0,0.30120591877825,0.369754010166788,0.0774672005803016,0,0,0.553995408531877,0.802177789880567,0.651032612147555,0,0.32389366601898,0,0.145398238779565,0.377875943688809,0.242584061187816,0.464858073811369,1.6446715520873,2.16794459626573,0.575384784644301,0.512321413058201,0.47296445977717,2.41321976515633,1.93645405075148,2.70852973188684,0.941211697713023,1.09162460023138,0.674170453335254,1.22433556948361,0.962787081228281,0.639337125799041,0.659702600373432,0,0,1.16083695451434,1.70215567407342,0.622822248995575,1.00499466102697,0.521482918420201,0,0,1.10483290796269,0.316462387440884,0,0,0,0,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0.954053754535364,0,0,0,0,0.560508562981536,0,1.37696839079683,1.57204305099666,1.43921049299656,5.3499678525017,3.91106719960308,0,0,5.01347055983281,3.53527088969805,2.65840673500345,2.97884250141517,9.35066633997429,6.24284868287415,3.61763390128087,1.93445012450094,4.34704628602579,1.03800594213442,0,0,4.07913633711238,1.53288197440768,1.71813722741315,1.26509846009751,1.59282707162048,1.95325036156926,3.8018081777935,2.40920190524436,2.55973222308837,3.74792179657038,3.55165878066025,3.28451198768419,3.62892137804518,2.67440195783507,1.44824403882799,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0.347140501607594,0,0,0.275118041940067,0.208994966536811,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06748995729705,0.49333509683432,0,0,0,1.36221684880438,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.355009592516614,0,0,0.773043412653187,1.09098448236334,0.573609190778008,0,0,0,0,0,0,1.56449532329816,0,0,0,0,0.118306800039844,0,0,0.110293972732394,0.217879444092406,0,0.134831308160164,0,0,0,0,0,0,0,0,0.590789906681404,7.94633578946371,0,0,0.548751427043128,0,0.100528972411631,0.0925884451585296,0.325808305310325,0,0,0,0,0,0,0,0,0,0,0,0,0.93733833986777,0,0.425325291727159,0,0,0,5.91195885475132,2.20121085033065,0.207328115540772,0.288239906833923,0.12624243342638,0,0,0,0,0,0,0,0.112131084345361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.458983575165,3.94061520403854,2.80315847317372,2.95188983443421,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0.215714200818617,1.81436848265855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0920809889358963,0,0,0,0,0,0,0,0,0,0.170093705276516,0,0,0,0,0,0,0,0.219259876645935,0,0,0,0,0.412164046590889,0,0,7.46545199395024,1.95018073810956,0,0,0,0,0,0,0,0,0,0.165284915360978,0.960950336825531,3.1903178123646,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.769776901804097,0,3.26672954583968,0.188287601553558,0,0,0,0,1.52234282769651,3.82318603571188,2.84823593587081,1.90585420366231,2.46817363851717,1.94541993357815,2.70015718619057,2.37937552888281,0,0,0,0.929015875628594,0.432807638929335,4.41079428760168,1.91311527274587,2.3949524571938,0.383010740264733,2.75175657541048,0,0.561594356226918,0,0.156679895773023,0,0.846458889008016,0,0,0,1.03051603426729,0,0.223676107892416,0,1.36771666781428,18.374807477086,0,1.08182271390393,0,2.81974010175699,0,0.293016358543788,0,5.57216921387392,0,0,0,0,0,0.281338832821026,0,91.136542447398,0,0.19924798825107,0.828851746593443,0,0,0.369254416383208,0,0,0,0,0.295930216910801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.77148277162768,0.361789315876224,0,0.552896299656123,0.295547618953547,0.219385397153973,0,0,0.307801034015188,0,0,0,0,0,0,0,8.17546385565892,18.2097097418229,8.64300745880813,9.02382642468723,6.07793856384993,13.4257269580674,2.65655225813859,4.92703394839174,0,0,0,0,0,0.176915129006678,0,11.5643240185443,12.9742135893828,13.2615875871928,0.269604531922708,0,0,0,0,0,0,0,0,0,0.450970258243478,0,0,0,0.627865836814451,0,0,0,0,0,0.261177619741208,0.17472666824203,0,0,0.0730893170861856,0,0.0969890164884194,0,0.451961481561065,0.685209623233754,4.37172145746577,0.253243183823515,0,0.0801588202515337,0.213452994739353,0,0,0,0,0,0,0.235694034616795,0,0,0.101998217636322,0,0,0.821432273351958,0,0,0.262887354279314,0.279282401272254,0,1.43574604915363,0.199679000498991,0,0,0.268733889946905,0,0,0,0,0,0,0,0,0.136203406111576,0.160753148465019,0,0,0,0,0.0607495566580247,0,0.0788057072991982,0.0524545881349981,0,22.5902047559384,0,0,0,0,0,0,0,0,4.02253351671761,0,0.113312091520126,0.293104467356165,0,0.517131825446202,0.39669780522807,0,0,0.747511887973863,0.471612915298998,0.414239055347196,1.9846640872478,3.75462100606094,0.121792598380896,0,0,0,0,0,0,0,0.244052529803926,0.751145584238999,0.573409195690071,0.665574309221114,0.310482014706917,0,0.124980407962107,0,0,0.941063278792687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231522474323834,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0.194860308839388,0.797189041880179,0.163565394255844,0,0,0,4.99968489637325,0.213383459388282,0,0,0,0,0,0,0,0,0,0.678930119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| ||
|short_description=p3@SH2D2A | |short_description=p3@SH2D2A | ||
}} | }} |
Latest revision as of 18:26, 17 September 2015
Short description: | p3@SH2D2A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SH2D2A_5end |
Coexpression cluster: | C69_anaplastic_CD14_cord_hairy_mycosis_adult_NK |
Association with transcript: | 0bp_to_ENST00000392306, NM_001161441, NM_001161442, NM_001161444, NM_003975, uc001fqd.2, uc001fqe.2, uc009wsh.2, uc010phs.1_5end |
EntrezGene: | SH2D2A |
HGNC: | 10821 |
UniProt: | Q5UBZ2Q5VZS4Q9NP31 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 1.69e-38 | 25 |
pro-T cell | 1.69e-38 | 25 |
mature alpha-beta T cell | 1.69e-29 | 18 |
alpha-beta T cell | 1.69e-29 | 18 |
immature T cell | 1.69e-29 | 18 |
mature T cell | 1.69e-29 | 18 |
immature alpha-beta T cell | 1.69e-29 | 18 |
hematopoietic cell | 4.07e-29 | 177 |
lymphoid lineage restricted progenitor cell | 9.64e-29 | 52 |
lymphocyte | 5.17e-28 | 53 |
common lymphoid progenitor | 5.17e-28 | 53 |
hematopoietic stem cell | 1.79e-27 | 168 |
hematopoietic oligopotent progenitor cell | 7.11e-27 | 161 |
hematopoietic multipotent progenitor cell | 7.11e-27 | 161 |
nongranular leukocyte | 1.19e-19 | 115 |
hematopoietic lineage restricted progenitor cell | 1.38e-19 | 120 |
CD8-positive, alpha-beta T cell | 7.41e-19 | 11 |
leukocyte | 6.82e-18 | 136 |
CD4-positive, alpha-beta T cell | 2.69e-10 | 6 |
Ontology term | p-value | n |
---|---|---|
blood | 3.86e-16 | 15 |
haemolymphatic fluid | 3.86e-16 | 15 |
organism substance | 3.86e-16 | 15 |
hematopoietic system | 4.08e-10 | 98 |
blood island | 4.08e-10 | 98 |
hemolymphoid system | 3.22e-09 | 108 |
hemopoietic organ | 3.41e-09 | 7 |
immune organ | 3.41e-09 | 7 |
thymus | 1.75e-08 | 4 |
hemolymphoid system gland | 1.75e-08 | 4 |
thymic region | 1.75e-08 | 4 |
pharyngeal gland | 1.75e-08 | 4 |
thymus primordium | 1.75e-08 | 4 |
Ontology term | p-value | n |
---|---|---|
chronic leukemia | 1.94e-16 | 8 |
hematologic cancer | 2.34e-16 | 51 |
immune system cancer | 2.34e-16 | 51 |
leukemia | 2.74e-15 | 39 |
myeloid leukemia | 1.03e-10 | 31 |