FFCP PHASE1:Hg19::chr3:27763383..27763413,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr3:27763383..27763413,- to FFCP PHASE1:Hg19::chr3:27763383..27763413,-: NSchange) |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=8320 | |EntrezGene=8320 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3372 | |HGNC=3372 | ||
|TSSclassifier=strong | |||
|UniProt=O95936 | |UniProt=O95936 | ||
|association_with_transcript=371bp_to_AB031038_5end | |||
|cluster_id=chr3:27763383..27763413,- | |||
|description=CAGE_peak_3_at_EOMES_5end | |||
|id=chr3:27763383..27763413,- | |||
|ontology_enrichment_celltype=CL:0000084!3.56e-15!25;CL:0000827!3.56e-15!25;CL:0000625!5.04e-13!11;CL:0000838!9.62e-13!52;CL:0000542!2.24e-12!53;CL:0000051!2.24e-12!53;CL:0000791!7.57e-11!18;CL:0000789!7.57e-11!18;CL:0002420!7.57e-11!18;CL:0002419!7.57e-11!18;CL:0000790!7.57e-11!18;CL:0002087!4.72e-10!119;CL:0000738!4.07e-09!140;CL:0002031!7.46e-08!124 | |||
|ontology_enrichment_celltype_v019=CL:0000625;7.72e-15;11!CL:0000084;6.41e-14;25!CL:0000791;8.99e-14;18!CL:0000789;8.99e-14;18!CL:0002419;8.99e-14;18!CL:0002127;4.01e-11;1!CL:0000911;4.01e-11;1!CL:0000814;4.01e-11;1!CL:0000542;9.10e-08;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000625,6.69e-15,11;CL:0000838,3.40e-14,52;CL:0000084,6.42e-14,25;CL:0000827,6.42e-14,25;CL:0000542,6.63e-14,53;CL:0000051,6.63e-14,53;CL:0000791,8.07e-14,18;CL:0000789,8.07e-14,18;CL:0002420,8.07e-14,18;CL:0002419,8.07e-14,18;CL:0000790,8.07e-14,18;CL:0002127,4.01e-11,1;CL:0000914,4.01e-11,1;CL:0000911,4.01e-11,1;CL:0000814,4.01e-11,1;CL:0002042,4.01e-11,1;CL:0002039,4.01e-11,1;CL:0002040,4.01e-11,1;CL:0002041,4.01e-11,1 | |||
|ontology_enrichment_development_v019=UBERON:0006215;3.80e-31;3!CL:0000790;8.99e-14;18!UBERON:0005425;4.01e-11;1!CL:0000051;9.10e-08;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3371;9.08e-12;1!DOID:4549;9.08e-12;1!DOID:5861;9.08e-12;1!DOID:6496;9.08e-12;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3371,9.57e-12,1;DOID:4549,9.57e-12,1;DOID:5861,9.57e-12,1;DOID:6496,9.57e-12,1 | |||
|ontology_enrichment_uberon=UBERON:0000178!5.64e-07!15;UBERON:0000179!5.64e-07!15;UBERON:0000463!5.64e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0002037;6.59e-16;6!UBERON:0004732;1.15e-12;13!UBERON:0000941;4.01e-11;1!UBERON:0001785;4.01e-11;1!UBERON:0002464;4.01e-11;1!UBERON:0004904;4.01e-11;1!UBERON:0001021;4.01e-11;1!UBERON:0002680;8.58e-11;9!UBERON:0001895;8.58e-11;9!UBERON:0004733;3.21e-08;12!UBERON:0002028;3.21e-08;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002037,6.77e-16,6;UBERON:0006215,6.77e-16,6;UBERON:0004732,1.10e-12,13;UBERON:0000941,3.28e-11,1;UBERON:0001785,3.28e-11,1;UBERON:0002464,3.28e-11,1;UBERON:0004904,3.28e-11,1;UBERON:0001021,3.28e-11,1;UBERON:0003902,3.28e-11,1;UBERON:0005425,3.28e-11,1;UBERON:0002680,8.72e-11,9;UBERON:0001895,8.72e-11,9;UBERON:0010092,8.72e-11,9;UBERON:0004733,3.25e-08,12;UBERON:0002028,3.25e-08,12;UBERON:0007277,3.25e-08,12 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.06316195519468,0.821005894499457,1.18066171970519,0.393364276848904,0.767658796194425,0.154816123316076,0,0,0,0,0,0,0,0.401088894940283,0.217010870715852,0.223915474239924,0.32389366601898,0,0.145398238779565,0,0,0,0.411167888021826,0.309706370895104,0,0,0,0,0,0,0.188242339542605,0,0.224723484445085,0,0,0.639337125799041,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.453237370790265,0.383220493601921,0,0.506039384039006,0.95569624297229,3.90650072313851,0,0.903450714466637,1.4078527226986,0,1.65744076430812,3.28451198768419,0.201606743224732,0.267440195783507,0.289648807765598,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0.116193942869518,0,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0.217879444092406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219500570817251,0,0.301586917234893,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383382679165211,0,0,0,0,0,0.190493682876507,0,2.34434894420094,0,0.308482478109971,0,0.857479297891735,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34502172792233,0.591092280605782,0.862510299438069,1.15508732651774,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0,0.853820462427555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,0.507447609232169,2.29391162142713,1.13929437434833,0.238231775457789,0.822724546172388,0,0,2.37937552888281,0.106824071127473,0,0,0,0,0.0711418433484141,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.659215496907038,0,0,0,0,0,0,0,0,0.179021174675609,0,0,0,0,0,0,0,0,0.262379999988587,0,0,0.508507300585533,0,0,0,0,0,0,6.10326945268333,2.10100593869327,2.36438095162838,0.438770794307945,0,0,0,0.113942055847001,0.23056390438806,0.0897576444097721,0.108647371922008,0,0,0,1.02193298195737,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0,0,0,0,0,0,0,0.782658475728359,0,0,0,0.30607276163049,0,0.300646838828985,0.103688191397247,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821154570532092,0,6.00141661502202,0,0,0.19871461170299,0,0.195551382734803,0.0801588202515337,0.213452994739353,0,1.72908500584927,0,0.171594997861965,0,0,0.471388069233591,0,0,0,0,0,0,0,0,0,0,0.229160424011684,0.717873024576814,0,0,0,0,0,0,0,0,0,0,0,0,0,0.643012593860077,0,0,0,0,0,0,0,0,0,0,0,0.714695326373367,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0.171086837884329,0,0.213574825135389,0,0.414239055347196,0,0,0,0.638341257770182,0,0,0,0,0.157054096250234,0,0,0,0,0.221858103073705,0,0.138348634936231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.537266523244462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19998739585493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252071696221718,0,0,1.42769420259154,0.196295437002051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.546974809018219,0,0,0,0,0,0,0,0,0,0.115233987555779,0,0.0679697329768317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.467878926924211,0,0,0.11294608203896,0,0.150962843566674,0,0,0,0,0,0,0,0,0,0.281951753939561,0.322289439867886,0,0,0.352894871715692,0,0,0,0,0,0,0.436350690340377,0,0,0,0,0,0,2.78736702225161,0,0.26721740526556,0.36757959813938,0,0,0,0,0,0.213233981900981,0,0,0,0,0,0,0,0,0.0673520530145875,0,0,0,0.106727345877715,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.06316195519468,0.821005894499457,1.18066171970519,0.393364276848904,0.767658796194425,0.154816123316076,0,0,0,0,0,0,0,0.401088894940283,0.217010870715852,0.223915474239924,0.32389366601898,0,0.145398238779565,0,0,0,0.411167888021826,0.309706370895104,0,0,0,0,0,0,0.188242339542605,0,0.224723484445085,0,0,0.639337125799041,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.453237370790265,0.383220493601921,0,0.506039384039006,0.95569624297229,3.90650072313851,0,0.903450714466637,1.4078527226986,0,1.65744076430812,3.28451198768419,0.201606743224732,0.267440195783507,0.289648807765598,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0.116193942869518,0,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0.217879444092406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219500570817251,0,0.301586917234893,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383382679165211,0,0,0,0,0,0.190493682876507,0,2.34434894420094,0,0.308482478109971,0,0.857479297891735,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34502172792233,0.591092280605782,0.862510299438069,1.15508732651774,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0,0.853820462427555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,0.507447609232169,2.29391162142713,1.13929437434833,0.238231775457789,0.822724546172388,0,0,2.37937552888281,0.106824071127473,0,0,0,0,0.0711418433484141,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.659215496907038,0,0,0,0,0,0,0,0,0.179021174675609,0,0,0,0,0,0,0,0,0.262379999988587,0,0,0.508507300585533,0,0,0,0,0,0,6.10326945268333,2.10100593869327,2.36438095162838,0.438770794307945,0,0,0,0.113942055847001,0.23056390438806,0.0897576444097721,0.108647371922008,0,0,0,1.02193298195737,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0,0,0,0,0,0,0,0.782658475728359,0,0,0,0.30607276163049,0,0.300646838828985,0.103688191397247,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821154570532092,0,6.00141661502202,0,0,0.19871461170299,0,0.195551382734803,0.0801588202515337,0.213452994739353,0,1.72908500584927,0,0.171594997861965,0,0,0.471388069233591,0,0,0,0,0,0,0,0,0,0,0.229160424011684,0.717873024576814,0,0,0,0,0,0,0,0,0,0,0,0,0,0.643012593860077,0,0,0,0,0,0,0,0,0,0,0,0.714695326373367,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0.171086837884329,0,0.213574825135389,0,0.414239055347196,0,0,0,0.638341257770182,0,0,0,0,0.157054096250234,0,0,0,0,0.221858103073705,0,0.138348634936231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.537266523244462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19998739585493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252071696221718,0,0,1.42769420259154,0.196295437002051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.546974809018219,0,0,0,0,0,0,0,0,0,0.115233987555779,0,0.0679697329768317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.467878926924211,0,0,0.11294608203896,0,0.150962843566674,0,0,0,0,0,0,0,0,0,0.281951753939561,0.322289439867886,0,0,0.352894871715692,0,0,0,0,0,0,0.436350690340377,0,0,0,0,0,0,2.78736702225161,0,0.26721740526556,0.36757959813938,0,0,0,0,0,0.213233981900981,0,0,0,0,0,0,0,0,0.0673520530145875,0,0,0,0.106727345877715,0,0,0,0,0,0,0,0 | ||
|short_description=p3@EOMES | |||
}} | }} |
Latest revision as of 21:15, 17 September 2015
Short description: | p3@EOMES |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_EOMES_5end |
Coexpression cluster: | NA |
Association with transcript: | 371bp_to_AB031038_5end |
EntrezGene: | EOMES |
HGNC: | 3372 |
UniProt: | O95936 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD8-positive, alpha-beta T cell | 6.69e-15 | 11 |
lymphoid lineage restricted progenitor cell | 3.40e-14 | 52 |
T cell | 6.42e-14 | 25 |
pro-T cell | 6.42e-14 | 25 |
lymphocyte | 6.63e-14 | 53 |
common lymphoid progenitor | 6.63e-14 | 53 |
mature alpha-beta T cell | 8.07e-14 | 18 |
alpha-beta T cell | 8.07e-14 | 18 |
immature T cell | 8.07e-14 | 18 |
mature T cell | 8.07e-14 | 18 |
immature alpha-beta T cell | 8.07e-14 | 18 |
innate effector T cell | 4.01e-11 | 1 |
immature NK T cell | 4.01e-11 | 1 |
effector T cell | 4.01e-11 | 1 |
mature NK T cell | 4.01e-11 | 1 |
immature NK T cell stage IV | 4.01e-11 | 1 |
immature NK T cell stage I | 4.01e-11 | 1 |
immature NK T cell stage II | 4.01e-11 | 1 |
immature NK T cell stage III | 4.01e-11 | 1 |
Ontology term | p-value | n |
---|---|---|
cerebellum | 6.77e-16 | 6 |
rhombic lip | 6.77e-16 | 6 |
segmental subdivision of nervous system | 1.10e-12 | 13 |
cranial nerve II | 3.28e-11 | 1 |
cranial nerve | 3.28e-11 | 1 |
nerve trunk | 3.28e-11 | 1 |
nerve connecting eye with brain | 3.28e-11 | 1 |
nerve | 3.28e-11 | 1 |
retinal neural layer | 3.28e-11 | 1 |
presumptive neural retina | 3.28e-11 | 1 |
regional part of metencephalon | 8.72e-11 | 9 |
metencephalon | 8.72e-11 | 9 |
future metencephalon | 8.72e-11 | 9 |
segmental subdivision of hindbrain | 3.25e-08 | 12 |
hindbrain | 3.25e-08 | 12 |
presumptive hindbrain | 3.25e-08 | 12 |
Ontology term | p-value | n |
---|---|---|
chondrosarcoma | 9.57e-12 | 1 |
extraosseous chondrosarcoma | 9.57e-12 | 1 |
myxoid chondrosarcoma | 9.57e-12 | 1 |
extraskeletal myxoid chondrosarcoma | 9.57e-12 | 1 |