FFCP PHASE1:Hg19::chr21:27253554..27253578,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr21:27253554..27253578,- to FFCP PHASE1:Hg19::chr21:27253554..27253578,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=351 | |EntrezGene=351 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=620 | |HGNC=620 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-356bp_to_S41242,S41243_5end | |||
|cluster_id=chr21:27253554..27253578,- | |||
|description=CAGE_peak_15_at_APP_5end | |||
|id=chr21:27253554..27253578,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000477!4.71e-17!286;UBERON:0004111!2.35e-16!241;UBERON:0000468!1.27e-14!659;UBERON:0001049!2.31e-13!57;UBERON:0005068!2.31e-13!57;UBERON:0006241!2.31e-13!57;UBERON:0007135!2.31e-13!57;UBERON:0000025!4.92e-13!194;UBERON:0000467!2.06e-12!625;UBERON:0002020!2.26e-12!34;UBERON:0003528!2.26e-12!34;UBERON:0005743!2.41e-12!86;UBERON:0002616!3.17e-12!59;UBERON:0000480!3.72e-12!626;UBERON:0001017!4.63e-12!82;UBERON:0003080!9.86e-12!42;UBERON:0002780!2.04e-11!41;UBERON:0001890!2.04e-11!41;UBERON:0006240!2.04e-11!41;UBERON:0000483!2.31e-11!309;UBERON:0001893!2.73e-11!34;UBERON:0002791!2.96e-11!33;UBERON:0000073!2.97e-11!94;UBERON:0001016!2.97e-11!94;UBERON:0001869!3.65e-11!32;UBERON:0000119!5.72e-11!312;UBERON:0000955!2.32e-10!69;UBERON:0006238!2.32e-10!69;UBERON:0002619!4.03e-10!22;UBERON:0000475!5.78e-10!365;UBERON:0003075!9.31e-10!86;UBERON:0007284!9.31e-10!86;UBERON:0002346!9.57e-10!90;UBERON:0000956!9.88e-10!25;UBERON:0000203!9.88e-10!25;UBERON:0000922!3.22e-09!612;UBERON:0002050!5.60e-09!605;UBERON:0005423!5.60e-09!605;UBERON:0001950!6.16e-09!20;UBERON:0000923!8.69e-09!604;UBERON:0005291!8.69e-09!604;UBERON:0006598!8.69e-09!604;UBERON:0002532!8.69e-09!604;UBERON:0000481!1.42e-08!347;UBERON:0000924!4.75e-08!173;UBERON:0006601!4.75e-08!173;UBERON:0004121!5.95e-08!169;UBERON:0000062!6.66e-08!511;UBERON:0003056!7.31e-08!61;UBERON:0000064!2.15e-07!219;UBERON:0000033!2.44e-07!123;UBERON:0007023!4.82e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;3.03e-10;22!UBERON:0003528;2.19e-09;34!UBERON:0002020;2.19e-09;34!UBERON:0002791;3.73e-09;32!UBERON:0001950;1.40e-08;20!UBERON:0001869;2.10e-08;32!UBERON:0000956;2.17e-08;25!UBERON:0000203;2.17e-08;25!UBERON:0002780;1.24e-07;41!UBERON:0001890;1.24e-07;41!UBERON:0001893;2.53e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004111,7.21e-14,240;UBERON:0001049,4.01e-12,56;UBERON:0005068,4.01e-12,56;UBERON:0006241,4.01e-12,56;UBERON:0007135,4.01e-12,56;UBERON:0003528,1.00e-11,34;UBERON:0002020,1.00e-11,34;UBERON:0002619,8.35e-11,22;UBERON:0000025,1.46e-10,192;UBERON:0000073,1.74e-10,53;UBERON:0002616,1.74e-10,53;UBERON:0002791,2.84e-10,32;UBERON:0002780,3.84e-10,41;UBERON:0001890,3.84e-10,41;UBERON:0003080,3.84e-10,41;UBERON:0006240,3.84e-10,41;UBERON:0001017,8.57e-10,81;UBERON:0001869,1.92e-09,32;UBERON:0000483,2.77e-09,306;UBERON:0001893,2.90e-09,34;UBERON:0003075,4.07e-09,82;UBERON:0007284,4.07e-09,82;UBERON:0001950,4.35e-09,20;UBERON:0000119,6.27e-09,309;UBERON:0000956,7.29e-09,25;UBERON:0000203,7.29e-09,25;UBERON:0001016,7.81e-09,89;UBERON:0000955,1.31e-08,68;UBERON:0006238,1.31e-08,68;UBERON:0010371,2.39e-08,104;UBERON:0010314,3.28e-08,132;UBERON:0002346,3.76e-08,86 | |||
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| ||
|short_description=p15@APP | |||
}} | }} |
Latest revision as of 22:37, 17 September 2015
Short description: | p15@APP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_15_at_APP_5end |
Coexpression cluster: | NA |
Association with transcript: | -356bp_to_S41242, S41243_5end |
EntrezGene: | APP |
HGNC: | 620 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
anatomical conduit | 7.21e-14 | 240 |
neural tube | 4.01e-12 | 56 |
neural rod | 4.01e-12 | 56 |
future spinal cord | 4.01e-12 | 56 |
neural keel | 4.01e-12 | 56 |
brain grey matter | 1.00e-11 | 34 |
gray matter | 1.00e-11 | 34 |
regional part of cerebral cortex | 8.35e-11 | 22 |
tube | 1.46e-10 | 192 |
regional part of nervous system | 1.74e-10 | 53 |
regional part of brain | 1.74e-10 | 53 |
regional part of telencephalon | 2.84e-10 | 32 |
regional part of forebrain | 3.84e-10 | 41 |
forebrain | 3.84e-10 | 41 |
anterior neural tube | 3.84e-10 | 41 |
future forebrain | 3.84e-10 | 41 |
central nervous system | 8.57e-10 | 81 |
cerebral hemisphere | 1.92e-09 | 32 |
epithelium | 2.77e-09 | 306 |
telencephalon | 2.90e-09 | 34 |
neural plate | 4.07e-09 | 82 |
presumptive neural plate | 4.07e-09 | 82 |
neocortex | 4.35e-09 | 20 |
cell layer | 6.27e-09 | 309 |
cerebral cortex | 7.29e-09 | 25 |
pallium | 7.29e-09 | 25 |
nervous system | 7.81e-09 | 89 |
brain | 1.31e-08 | 68 |
future brain | 1.31e-08 | 68 |
ecto-epithelium | 2.39e-08 | 104 |
structure with developmental contribution from neural crest | 3.28e-08 | 132 |
neurectoderm | 3.76e-08 | 86 |