FFCP PHASE1:Hg19::chr21:27327988..27328059,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=351 | |EntrezGene=351 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=620 | |HGNC=620 | ||
|TSSclassifier=strong | |||
|UniProt=P05067 | |UniProt=P05067 | ||
|association_with_transcript=0bp_to_M18734_5end | |association_with_transcript=0bp_to_M18734_5end | ||
|cluster_id=chr21:27327988..27328059,- | |||
|description=CAGE_peak_12_at_APP_5end | |description=CAGE_peak_12_at_APP_5end | ||
|id=chr21:27327988..27328059,- | |id=chr21:27327988..27328059,- | ||
|ontology_enrichment_celltype=CL:0000066!1.42e-09!254 | |ontology_enrichment_celltype=CL:0000066!1.42e-09!254 | ||
|ontology_enrichment_celltype_v019=CL:0002139;5.90e-08;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,1.48e-08,24;CL:0000213,6.26e-08,58;CL:0000215,6.26e-08,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!5.74e-14!659;UBERON:0000467!9.55e-13!625;UBERON:0000480!1.78e-12!626;UBERON:0004111!3.07e-11!241;UBERON:0004121!6.49e-11!169;UBERON:0000924!8.15e-11!173;UBERON:0006601!8.15e-11!173;UBERON:0001017!9.52e-11!82;UBERON:0005743!1.17e-10!86;UBERON:0000477!1.37e-10!286;UBERON:0001049!1.97e-10!57;UBERON:0005068!1.97e-10!57;UBERON:0006241!1.97e-10!57;UBERON:0007135!1.97e-10!57;UBERON:0002619!5.44e-10!22;UBERON:0007023!6.18e-10!115;UBERON:0000922!1.26e-09!612;UBERON:0002020!1.27e-09!34;UBERON:0003528!1.27e-09!34;UBERON:0002791!1.57e-09!33;UBERON:0000956!1.73e-09!25;UBERON:0000203!1.73e-09!25;UBERON:0000073!1.75e-09!94;UBERON:0001016!1.75e-09!94;UBERON:0001950!1.86e-09!20;UBERON:0002616!2.31e-09!59;UBERON:0002780!2.56e-09!41;UBERON:0001890!2.56e-09!41;UBERON:0006240!2.56e-09!41;UBERON:0001893!2.96e-09!34;UBERON:0001869!3.81e-09!32;UBERON:0000955!4.34e-09!69;UBERON:0006238!4.34e-09!69;UBERON:0000475!5.90e-09!365;UBERON:0002050!6.17e-09!605;UBERON:0005423!6.17e-09!605;UBERON:0000923!7.70e-09!604;UBERON:0005291!7.70e-09!604;UBERON:0006598!7.70e-09!604;UBERON:0002532!7.70e-09!604;UBERON:0003080!1.22e-08!42;UBERON:0000033!1.57e-08!123;UBERON:0003075!2.78e-08!86;UBERON:0007284!2.78e-08!86;UBERON:0002346!4.35e-08!90;UBERON:0000062!5.38e-08!511;UBERON:0000481!1.39e-07!347;UBERON:0000483!1.40e-07!309;UBERON:0000119!1.49e-07!312;UBERON:0000153!2.03e-07!129;UBERON:0007811!2.03e-07!129;UBERON:0000025!5.57e-07!194 | |||
|ontology_enrichment_uberon_v019=UBERON:0001950;3.24e-12;20!UBERON:0002619;4.30e-12;22!UBERON:0000956;6.11e-11;25!UBERON:0000203;6.11e-11;25!UBERON:0002791;2.89e-10;32!UBERON:0001869;2.99e-10;32!UBERON:0003528;1.48e-09;34!UBERON:0002020;1.48e-09;34!UBERON:0001893;8.50e-09;34!UBERON:0002780;1.27e-07;41!UBERON:0001890;1.27e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001950,1.83e-12,20;UBERON:0002619,2.59e-12,22;UBERON:0004111,5.25e-11,240;UBERON:0000956,5.53e-11,25;UBERON:0000203,5.53e-11,25;UBERON:0002791,1.27e-10,32;UBERON:0001869,1.27e-10,32;UBERON:0003528,1.28e-10,34;UBERON:0002020,1.28e-10,34;UBERON:0010371,1.49e-10,104;UBERON:0001049,3.47e-10,56;UBERON:0005068,3.47e-10,56;UBERON:0006241,3.47e-10,56;UBERON:0007135,3.47e-10,56;UBERON:0002780,4.56e-10,41;UBERON:0001890,4.56e-10,41;UBERON:0003080,4.56e-10,41;UBERON:0006240,4.56e-10,41;UBERON:0001893,1.53e-09,34;UBERON:0001017,2.52e-09,81;UBERON:0000073,4.85e-09,53;UBERON:0002616,4.85e-09,53;UBERON:0003075,1.22e-08,82;UBERON:0007284,1.22e-08,82;UBERON:0001016,2.11e-08,89;UBERON:0004121,6.16e-08,171;UBERON:0000924,6.16e-08,171;UBERON:0006601,6.16e-08,171;UBERON:0000955,7.40e-08,68;UBERON:0006238,7.40e-08,68;UBERON:0002346,1.15e-07,86;UBERON:0003056,1.58e-07,61;UBERON:0007023,2.11e-07,114 | |||
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| ||
|short_description=p12@APP | |short_description=p12@APP | ||
}} | }} |
Latest revision as of 22:51, 17 September 2015
Short description: | p12@APP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_APP_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_M18734_5end |
EntrezGene: | APP |
HGNC: | 620 |
UniProt: | P05067 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 1.48e-08 | 24 |
lining cell | 6.26e-08 | 58 |
barrier cell | 6.26e-08 | 58 |
Ontology term | p-value | n |
---|---|---|
neocortex | 1.83e-12 | 20 |
regional part of cerebral cortex | 2.59e-12 | 22 |
anatomical conduit | 5.25e-11 | 240 |
cerebral cortex | 5.53e-11 | 25 |
pallium | 5.53e-11 | 25 |
regional part of telencephalon | 1.27e-10 | 32 |
cerebral hemisphere | 1.27e-10 | 32 |
brain grey matter | 1.28e-10 | 34 |
gray matter | 1.28e-10 | 34 |
ecto-epithelium | 1.49e-10 | 104 |
neural tube | 3.47e-10 | 56 |
neural rod | 3.47e-10 | 56 |
future spinal cord | 3.47e-10 | 56 |
neural keel | 3.47e-10 | 56 |
regional part of forebrain | 4.56e-10 | 41 |
forebrain | 4.56e-10 | 41 |
anterior neural tube | 4.56e-10 | 41 |
future forebrain | 4.56e-10 | 41 |
telencephalon | 1.53e-09 | 34 |
central nervous system | 2.52e-09 | 81 |
regional part of nervous system | 4.85e-09 | 53 |
regional part of brain | 4.85e-09 | 53 |
neural plate | 1.22e-08 | 82 |
presumptive neural plate | 1.22e-08 | 82 |
nervous system | 2.11e-08 | 89 |
ectoderm-derived structure | 6.16e-08 | 171 |
ectoderm | 6.16e-08 | 171 |
presumptive ectoderm | 6.16e-08 | 171 |
brain | 7.40e-08 | 68 |
future brain | 7.40e-08 | 68 |
neurectoderm | 1.15e-07 | 86 |
pre-chordal neural plate | 1.58e-07 | 61 |
adult organism | 2.11e-07 | 114 |