FFCP PHASE1:Hg19::chr21:27423339..27423352,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=351 | |EntrezGene=351 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=620 | |HGNC=620 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000415997_5end | |association_with_transcript=0bp_to_ENST00000415997_5end | ||
|cluster_id=chr21:27423339..27423352,- | |||
|coexpression_cluster_id=C1073 | |coexpression_cluster_id=C1073 | ||
|description=CAGE_peak_10_at_APP_5end | |description=CAGE_peak_10_at_APP_5end | ||
|id=chr21:27423339..27423352,- | |id=chr21:27423339..27423352,- | ||
|ontology_enrichment_celltype=CL:0000066!1.56e-07!254 | |ontology_enrichment_celltype=CL:0000066!1.56e-07!254 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,7.59e-07,253;CL:0000213,8.70e-07,58;CL:0000215,8.70e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:2394;8.32e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,7.48e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0001049!6.20e-14!57;UBERON:0005068!6.20e-14!57;UBERON:0006241!6.20e-14!57;UBERON:0007135!6.20e-14!57;UBERON:0003080!1.05e-13!42;UBERON:0000468!1.35e-13!659;UBERON:0002780!1.73e-13!41;UBERON:0001890!1.73e-13!41;UBERON:0006240!1.73e-13!41;UBERON:0002616!8.57e-12!59;UBERON:0002020!9.03e-12!34;UBERON:0003528!9.03e-12!34;UBERON:0000467!3.04e-11!625;UBERON:0002791!3.36e-11!33;UBERON:0001017!3.38e-11!82;UBERON:0001893!3.50e-11!34;UBERON:0004111!4.91e-11!241;UBERON:0001869!5.28e-11!32;UBERON:0000480!5.49e-11!626;UBERON:0005743!2.66e-10!86;UBERON:0000955!2.78e-10!69;UBERON:0006238!2.78e-10!69;UBERON:0000073!2.90e-10!94;UBERON:0001016!2.90e-10!94;UBERON:0000477!8.39e-10!286;UBERON:0002619!1.21e-09!22;UBERON:0000922!1.40e-09!612;UBERON:0002346!2.09e-09!90;UBERON:0003075!2.19e-09!86;UBERON:0007284!2.19e-09!86;UBERON:0000956!4.15e-09!25;UBERON:0000203!4.15e-09!25;UBERON:0000924!9.99e-09!173;UBERON:0006601!9.99e-09!173;UBERON:0000062!1.09e-08!511;UBERON:0004121!1.30e-08!169;UBERON:0001950!1.57e-08!20;UBERON:0000025!2.10e-08!194;UBERON:0000923!3.06e-08!604;UBERON:0005291!3.06e-08!604;UBERON:0006598!3.06e-08!604;UBERON:0002532!3.06e-08!604;UBERON:0002050!3.34e-08!605;UBERON:0005423!3.34e-08!605;UBERON:0003056!4.70e-08!61;UBERON:0007023!7.76e-08!115;UBERON:0000475!2.58e-07!365;UBERON:0000033!5.54e-07!123 | |ontology_enrichment_uberon=UBERON:0001049!6.20e-14!57;UBERON:0005068!6.20e-14!57;UBERON:0006241!6.20e-14!57;UBERON:0007135!6.20e-14!57;UBERON:0003080!1.05e-13!42;UBERON:0000468!1.35e-13!659;UBERON:0002780!1.73e-13!41;UBERON:0001890!1.73e-13!41;UBERON:0006240!1.73e-13!41;UBERON:0002616!8.57e-12!59;UBERON:0002020!9.03e-12!34;UBERON:0003528!9.03e-12!34;UBERON:0000467!3.04e-11!625;UBERON:0002791!3.36e-11!33;UBERON:0001017!3.38e-11!82;UBERON:0001893!3.50e-11!34;UBERON:0004111!4.91e-11!241;UBERON:0001869!5.28e-11!32;UBERON:0000480!5.49e-11!626;UBERON:0005743!2.66e-10!86;UBERON:0000955!2.78e-10!69;UBERON:0006238!2.78e-10!69;UBERON:0000073!2.90e-10!94;UBERON:0001016!2.90e-10!94;UBERON:0000477!8.39e-10!286;UBERON:0002619!1.21e-09!22;UBERON:0000922!1.40e-09!612;UBERON:0002346!2.09e-09!90;UBERON:0003075!2.19e-09!86;UBERON:0007284!2.19e-09!86;UBERON:0000956!4.15e-09!25;UBERON:0000203!4.15e-09!25;UBERON:0000924!9.99e-09!173;UBERON:0006601!9.99e-09!173;UBERON:0000062!1.09e-08!511;UBERON:0004121!1.30e-08!169;UBERON:0001950!1.57e-08!20;UBERON:0000025!2.10e-08!194;UBERON:0000923!3.06e-08!604;UBERON:0005291!3.06e-08!604;UBERON:0006598!3.06e-08!604;UBERON:0002532!3.06e-08!604;UBERON:0002050!3.34e-08!605;UBERON:0005423!3.34e-08!605;UBERON:0003056!4.70e-08!61;UBERON:0007023!7.76e-08!115;UBERON:0000475!2.58e-07!365;UBERON:0000033!5.54e-07!123 | ||
|ontology_enrichment_uberon_v019=UBERON:0002791;4.20e-11;32!UBERON:0003528;5.42e-11;34!UBERON:0002020;5.42e-11;34!UBERON:0002619;1.00e-10;22!UBERON:0001869;2.15e-10;32!UBERON:0002780;9.42e-10;41!UBERON:0001890;9.42e-10;41!UBERON:0000956;1.68e-09;25!UBERON:0000203;1.68e-09;25!UBERON:0001950;2.73e-09;20!UBERON:0001893;2.81e-09;34 | |||
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| ||
|short_description=p10@APP | |short_description=p10@APP | ||
}} | }} |
Latest revision as of 22:59, 17 September 2015
Short description: | p10@APP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_APP_5end |
Coexpression cluster: | C1073_olfactory_Prostate_Cardiac_medial_occipital_seminal_diencephalon |
Association with transcript: | 0bp_to_ENST00000415997_5end |
EntrezGene: | APP |
HGNC: | 620 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 7.59e-07 | 253 |
lining cell | 8.70e-07 | 58 |
barrier cell | 8.70e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
regional part of forebrain | 2.36e-13 | 41 |
forebrain | 2.36e-13 | 41 |
anterior neural tube | 2.36e-13 | 41 |
future forebrain | 2.36e-13 | 41 |
brain grey matter | 1.52e-12 | 34 |
gray matter | 1.52e-12 | 34 |
regional part of telencephalon | 4.28e-12 | 32 |
neural tube | 2.53e-11 | 56 |
neural rod | 2.53e-11 | 56 |
future spinal cord | 2.53e-11 | 56 |
neural keel | 2.53e-11 | 56 |
cerebral hemisphere | 6.87e-11 | 32 |
telencephalon | 8.06e-11 | 34 |
regional part of cerebral cortex | 1.17e-10 | 22 |
regional part of nervous system | 1.35e-10 | 53 |
regional part of brain | 1.35e-10 | 53 |
ecto-epithelium | 2.30e-10 | 104 |
cerebral cortex | 1.76e-09 | 25 |
pallium | 1.76e-09 | 25 |
neocortex | 3.24e-09 | 20 |
pre-chordal neural plate | 1.35e-08 | 61 |
anatomical conduit | 2.07e-08 | 240 |
neural plate | 2.32e-08 | 82 |
presumptive neural plate | 2.32e-08 | 82 |
neurectoderm | 7.44e-08 | 86 |
brain | 9.08e-08 | 68 |
future brain | 9.08e-08 | 68 |
central nervous system | 9.10e-08 | 81 |
nervous system | 1.11e-07 | 89 |
ectoderm-derived structure | 5.20e-07 | 171 |
ectoderm | 5.20e-07 | 171 |
presumptive ectoderm | 5.20e-07 | 171 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 7.48e-07 | 14 |