FFCP PHASE1:Hg19::chr7:26241181..26241215,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr7:26241181..26241215,- to FFCP PHASE1:Hg19::chr7:26241181..26241215,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3181 | |EntrezGene=3181 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5033 | |HGNC=5033 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-32bp_to_ENST00000490912_5end | |||
|cluster_id=chr7:26241181..26241215,- | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_17_at_HNRNPA2B1_5end | |||
|id=chr7:26241181..26241215,- | |||
|ontology_enrichment_celltype=CL:0000860!5.60e-15!45;CL:0002057!8.38e-15!42;CL:0000766!1.53e-12!76;CL:0000738!3.54e-12!140;CL:0002031!2.08e-11!124;CL:0000839!2.68e-11!70;CL:0002087!7.10e-11!119;CL:0002194!5.24e-10!63;CL:0000576!5.24e-10!63;CL:0000040!5.24e-10!63;CL:0000559!5.24e-10!63;CL:0002009!1.80e-09!65;CL:0000557!1.81e-09!71;CL:0000037!1.82e-09!172;CL:0000566!1.82e-09!172;CL:0002032!2.18e-09!165;CL:0000837!2.18e-09!165;CL:0000988!1.07e-08!182;CL:0000763!1.20e-07!112;CL:0000049!1.20e-07!112 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.92e-10;33!CL:0002057;2.92e-10;33!CL:0000766;4.81e-10;69!CL:0000576;2.51e-09;48!CL:0000775;7.61e-08;3!CL:0000094;8.73e-08;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,4.99e-17,42;CL:0002057,4.99e-17,42;CL:0000766,4.16e-16,72;CL:0000473,3.15e-14,48;CL:0000234,3.15e-14,48;CL:0000839,3.56e-12,66;CL:0000738,1.14e-10,136;CL:0000557,1.29e-10,67;CL:0002194,2.37e-10,59;CL:0000576,2.37e-10,59;CL:0000040,2.37e-10,59;CL:0000559,2.37e-10,59;CL:0000763,2.81e-10,108;CL:0000049,2.81e-10,108;CL:0002009,7.39e-10,61;CL:0002393,2.90e-09,9;CL:0002397,2.90e-09,9;CL:0002031,1.64e-08,120;CL:0002032,1.72e-08,161;CL:0000837,1.72e-08,161;CL:0000037,1.92e-08,168;CL:0000775,5.78e-08,3;CL:0000094,7.44e-08,8;CL:0000988,1.36e-07,177;CL:0002087,6.99e-07,115 | |||
|ontology_enrichment_development_v019=CL:0002057;1.40e-12;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.62e-14!115;UBERON:0003080!1.25e-09!42;UBERON:0001049!1.32e-09!57;UBERON:0005068!1.32e-09!57;UBERON:0006241!1.32e-09!57;UBERON:0007135!1.32e-09!57;UBERON:0002780!2.67e-09!41;UBERON:0001890!2.67e-09!41;UBERON:0006240!2.67e-09!41;UBERON:0002390!8.93e-09!102;UBERON:0003061!8.93e-09!102;UBERON:0002616!7.04e-08!59;UBERON:0002193!2.93e-07!112;UBERON:0000955!3.47e-07!69;UBERON:0006238!3.47e-07!69;UBERON:0002371!3.66e-07!80 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,4.68e-09,98;UBERON:0003061,4.68e-09,98;UBERON:0002371,9.59e-09,76;UBERON:0000073,3.55e-08,53;UBERON:0002616,3.55e-08,53;UBERON:0001474,9.77e-08,82;UBERON:0002193,1.18e-07,108;UBERON:0001049,1.54e-07,56;UBERON:0005068,1.54e-07,56;UBERON:0006241,1.54e-07,56;UBERON:0007135,1.54e-07,56;UBERON:0002780,1.61e-07,41;UBERON:0001890,1.61e-07,41;UBERON:0003080,1.61e-07,41;UBERON:0006240,1.61e-07,41;UBERON:0007023,1.92e-07,114;UBERON:0003075,6.64e-07,82;UBERON:0007284,6.64e-07,82;UBERON:0003528,7.20e-07,34;UBERON:0002020,7.20e-07,34 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0.261185628199839,0.245733936501509,0,0.436882744260345,0.527533956456907,0,0,0.672325146451775,0,0,0,0,0.204000691244253,0.313454721478088,0,0.410623275218653,0.502170558379211,0.534893840235659,0.492603536699674,0.629686250509434,0.786728553697808,0,0.154816123316076,0,0,0,0.232401601740905,0.284338464974843,0,3.87796785972314,1.40381113229099,1.30206522429511,0,0,0.257575567634187,1.59938062657521,1.13362783106643,0.485168122375632,0.464858073811369,0.411167888021826,0.309706370895104,1.43846196161075,1.0246428261164,1.6553756092201,0.344745680736619,0,2.70852973188684,1.31769637679823,0.545812300115692,0.449446968890169,0.918251677112708,0.320929027076094,1.27867425159808,0.329851300186716,0.797854630486527,1.70489900213078,0.870627715885752,1.13477044938228,1.24564449799115,0.75374599577023,0.521482918420201,1.08594422352558,1.81619850790011,0,1.58231193720442,1.05627643155971,0.637812899895131,0.628975936525128,0.898629049171961,0.300353785683013,0.48217676009124,0.855038231223746,2.18808344918999,2.19196984517561,1.75996244461323,1.63841583378639,0.889509253863555,0,1.20118796110804,0,1.98313461835459,2.86216126360609,0,0,0,1.32171328579026,0.560508562981536,0,0.590129310341499,0.786021525498329,0.411202997999018,0.334372990781356,0.651844533267181,0.473447805734733,0,0.111410456885174,0.589211814949674,0.221533894583621,0,0.640456598628376,0.130059347559878,0.328875809207352,0,0.289803085735052,0.593146252648242,0.535081656179426,1.04535523804977,0.226618685395132,0.766440987203842,0,0.506039384039006,0.318565414324097,0.651083453856419,0.950452044448374,0.451725357233318,0.639933055772092,0,0,0.821127996921047,0,0.802320587350522,0.579297615531196,0,0,0,0.361439152384566,0,0,0,0,0,0.221729397462564,0.087834785693126,6.61444331263449,0,0,0.324547393654683,0.522389211897802,0.26591592103773,0.715471872916026,1.14398982156026,0.371457501329565,0.198762407366705,0.860234595106124,0.347140501607594,0.56530794192401,0.419499436209906,0.550236083880135,0,0.258416759169329,0,0,0,0,0,0,0,0.535798369704479,0.22452937262617,0,0,0,0.183201743930407,7.9068250461638,3.87780264148325,0,0.496971951695318,0.12663051166458,0.397227542439656,0.286836620748814,0,0,0,0.24666754841716,0,0.269421344139376,0.163461903113459,0.151357427644931,0,0,0.312160076830321,0,0.149448680551801,0,0.161872944368132,0.140450806702248,0,0,0.103325781175765,0,0.494533858557114,0.910161361938026,0,0.168336113954066,0.125118519871964,0,0,0,0.300476117813194,0.226864366320042,0.179389635688862,0.640672166455702,0.211931901159562,0,0,0.257640540045629,0.18611685633159,0.168776332241266,0.0974370051611986,0.252433774244115,0.184099797284599,0.484938170456436,0,0.10075209822764,0,0,0.545492241181669,0,0,0,0,0.207322110030741,0,0,0,0,0,0,0.721879481669586,0,0,0.241011029883482,0.220587945464788,0,0,0.269662616320329,0,0,0,0,0,0,0,0,0,0,0.245976877086227,0,0.109750285408626,0,0,0.0925884451585296,0,0,1.44331342025273,0.231860809950154,0.117408694235822,0.144366447761074,0,0.190254152234598,0.790204397959275,0,0.246217006087397,0.234004265139238,0.148631162288728,0.93733833986777,0.16798212819886,0.141775097242386,0.0895585227028483,0,0.383382679165211,0,0.264145302039678,0.414656231081544,1.15295962733569,1.00993946741104,0,0,0,0,0.205654985406647,0,0,0.112131084345361,0,0,0.258543431515556,0,0,0.26593811658487,0,0,0,0.532844358032199,0.142977993658148,0.542621605391443,0,0,0.710783897485092,0,0,0,0.199945982364114,0,0,0,0.479249710983165,0,0,0.289562613335158,0.205476322550383,0,0.224170287987055,0,0.215627574859517,0.128343036279748,0.254094624222463,0,0,0.670065061337395,0,1.49801404789436,2.99161459204025,1.24324654030811,0,0,0.271265023699736,0.207970861530807,0.356857977594324,0.157702415033935,0.35142424497814,0.300946099727719,0,0,0,0,0.347534457872331,0.195801157462741,0.343143423810856,0,0.862856803274467,0.640365346820666,0.303127571446259,0,0,0.248107807818777,0,0,0.128139149255701,0,0,0,0,0,0,0,0.348631135379878,0.725156697549733,0.200506470303285,0.276242966807689,0.114814448164607,0.182091168006717,0.262248829918848,0,0,0.784349769176855,0,0.105551628892876,0,0,0,0,0.270946437543853,0,0,0.831076008928724,0.223874754722178,0.877039506583738,2.0914836081992,0,0.656029291399411,0,0.824328093181778,0,0.082509499920588,0,0,0,0,0,0,0.137836572484531,0.322260734604821,0,0,0.267096106940212,0.165284915360978,0,0,0.30347334256665,0,0.31481234683064,1.3940745403212,0,0,0,0.18532421910392,0.143124886741991,0,0,0,0,1.28381696410176,0,0.78494864019923,0,0,0,0.202182481573316,0,0,0,0.487426979262569,0,0.409499734223957,0,0,1.10273068709225,0,0,0,0,0,0.30982349809975,0,0,0,0.35667105148125,0,0,0.658589785919804,0.379473173765715,0.699869440489966,0,0,1.08890984861323,2.91845782408015,0,0,0,0,1.52234282769651,0,2.27858874869665,0.952927101831156,2.05681136543097,0,2.16012574895246,0.79312517629427,0.213648142254946,0,0.490080431962063,0.371606350251437,0,0.284567373393656,0.159426272728822,0,0,0.423347165447766,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| ||
|short_description=p17@HNRNPA2B1 | |||
}} | }} |
Latest revision as of 23:24, 17 September 2015
Short description: | p17@HNRNPA2B1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_17_at_HNRNPA2B1_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | -32bp_to_ENST00000490912_5end |
EntrezGene: | HNRNPA2B1 |
HGNC: | 5033 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 4.99e-17 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.99e-17 | 42 |
myeloid leukocyte | 4.16e-16 | 72 |
defensive cell | 3.15e-14 | 48 |
phagocyte | 3.15e-14 | 48 |
myeloid lineage restricted progenitor cell | 3.56e-12 | 66 |
leukocyte | 1.14e-10 | 136 |
granulocyte monocyte progenitor cell | 1.29e-10 | 67 |
monopoietic cell | 2.37e-10 | 59 |
monocyte | 2.37e-10 | 59 |
monoblast | 2.37e-10 | 59 |
promonocyte | 2.37e-10 | 59 |
myeloid cell | 2.81e-10 | 108 |
common myeloid progenitor | 2.81e-10 | 108 |
macrophage dendritic cell progenitor | 7.39e-10 | 61 |
intermediate monocyte | 2.90e-09 | 9 |
CD14-positive, CD16-positive monocyte | 2.90e-09 | 9 |
hematopoietic lineage restricted progenitor cell | 1.64e-08 | 120 |
hematopoietic oligopotent progenitor cell | 1.72e-08 | 161 |
hematopoietic multipotent progenitor cell | 1.72e-08 | 161 |
hematopoietic stem cell | 1.92e-08 | 168 |
neutrophil | 5.78e-08 | 3 |
granulocyte | 7.44e-08 | 8 |
hematopoietic cell | 1.36e-07 | 177 |
nongranular leukocyte | 6.99e-07 | 115 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 4.68e-09 | 98 |
blood island | 4.68e-09 | 98 |
bone marrow | 9.59e-09 | 76 |
regional part of nervous system | 3.55e-08 | 53 |
regional part of brain | 3.55e-08 | 53 |
bone element | 9.77e-08 | 82 |
hemolymphoid system | 1.18e-07 | 108 |
neural tube | 1.54e-07 | 56 |
neural rod | 1.54e-07 | 56 |
future spinal cord | 1.54e-07 | 56 |
neural keel | 1.54e-07 | 56 |
regional part of forebrain | 1.61e-07 | 41 |
forebrain | 1.61e-07 | 41 |
anterior neural tube | 1.61e-07 | 41 |
future forebrain | 1.61e-07 | 41 |
adult organism | 1.92e-07 | 114 |
neural plate | 6.64e-07 | 82 |
presumptive neural plate | 6.64e-07 | 82 |
brain grey matter | 7.20e-07 | 34 |
gray matter | 7.20e-07 | 34 |