FFCP PHASE1:Hg19::chr5:58295564..58295588,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5144 | |EntrezGene=5144 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8783 | |HGNC=8783 | ||
|TSSclassifier=strong | |||
|UniProt=Q08499 | |UniProt=Q08499 | ||
|association_with_transcript=170bp_to_ENST00000317118,NM_001197223,uc003jrs.2_5end | |association_with_transcript=170bp_to_ENST00000317118,NM_001197223,uc003jrs.2_5end | ||
|cluster_id=chr5:58295564..58295588,- | |||
|coexpression_cluster_id=C214 | |||
|description=CAGE_peak_59_at_PDE4D_5end | |description=CAGE_peak_59_at_PDE4D_5end | ||
|id=chr5:58295564..58295588,- | |id=chr5:58295564..58295588,- | ||
|ontology_enrichment_celltype=CL:0000047!2.11e-19!8;CL:0002605!3.67e-19!3;CL:0002319!5.71e-17!25;CL:0000128!4.45e-14!7;CL:0000126!4.45e-14!7;CL:0000127!4.45e-14!7;CL:0002453!4.45e-14!7;CL:0000540!5.15e-10!6;CL:0000031!5.15e-10!6;CL:0000404!5.15e-10!6 | |ontology_enrichment_celltype=CL:0000047!2.11e-19!8;CL:0002605!3.67e-19!3;CL:0002319!5.71e-17!25;CL:0000128!4.45e-14!7;CL:0000126!4.45e-14!7;CL:0000127!4.45e-14!7;CL:0002453!4.45e-14!7;CL:0000540!5.15e-10!6;CL:0000031!5.15e-10!6;CL:0000404!5.15e-10!6 | ||
|ontology_enrichment_celltype_v019=CL:0002605;1.41e-49;3!CL:0002319;1.08e-29;25!CL:0000540;1.05e-25;6!CL:0000404;1.05e-25;6!CL:0000128;1.01e-21;7!CL:0000126;1.01e-21;7!CL:0000127;1.01e-21;7!CL:0000047;8.69e-10;2!CL:0000243;2.50e-09;15!CL:0000125;2.50e-09;15!CL:0000095;2.09e-08;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0002605,1.67e-49,3;CL:0000047,9.58e-34,8;CL:0002319,1.15e-29,25;CL:0000540,1.10e-25,6;CL:0000031,1.10e-25,6;CL:0000404,1.10e-25,6;CL:0000128,1.08e-21,7;CL:0000126,1.08e-21,7;CL:0000127,1.08e-21,7;CL:0002453,1.08e-21,7;CL:0000133,5.81e-13,59;CL:0000221,1.29e-10,72;CL:0000243,2.57e-09,15;CL:0000125,2.57e-09,15;CL:0000030,2.57e-09,15;CL:0000339,2.57e-09,15;CL:0000095,2.14e-08,17;CL:0000123,2.14e-08,17 | |||
|ontology_enrichment_development_v019=CL:0000031;1.05e-25;6!CL:0000133;9.58e-10;59!CL:0000339;2.50e-09;15 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|short_description=p59@PDE4D | |short_description=p59@PDE4D | ||
}} | }} |
Latest revision as of 06:54, 18 September 2015
Short description: | p59@PDE4D |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_59_at_PDE4D_5end |
Coexpression cluster: | C214_Neurons_Neural_duodenum_temporal_occipital_parietal_brain |
Association with transcript: | 170bp_to_ENST00000317118, NM_001197223, uc003jrs.2_5end |
EntrezGene: | PDE4D |
HGNC: | 8783 |
UniProt: | Q08499 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
astrocyte of the cerebral cortex | 1.67e-49 | 3 |
neuronal stem cell | 9.58e-34 | 8 |
neural cell | 1.15e-29 | 25 |
neuron | 1.10e-25 | 6 |
neuroblast | 1.10e-25 | 6 |
electrically signaling cell | 1.10e-25 | 6 |
oligodendrocyte | 1.08e-21 | 7 |
macroglial cell | 1.08e-21 | 7 |
astrocyte | 1.08e-21 | 7 |
oligodendrocyte precursor cell | 1.08e-21 | 7 |
neurectodermal cell | 5.81e-13 | 59 |
ectodermal cell | 1.29e-10 | 72 |
glial cell (sensu Vertebrata) | 2.57e-09 | 15 |
glial cell | 2.57e-09 | 15 |
glioblast | 2.57e-09 | 15 |
glioblast (sensu Vertebrata) | 2.57e-09 | 15 |
neuron associated cell | 2.14e-08 | 17 |
neuron associated cell (sensu Vertebrata) | 2.14e-08 | 17 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 3.28e-19 | 81 |
nervous system | 2.93e-17 | 89 |
cerebral cortex | 6.89e-16 | 25 |
pallium | 6.89e-16 | 25 |
regional part of telencephalon | 1.55e-12 | 32 |
cerebral hemisphere | 1.55e-12 | 32 |
brain grey matter | 7.98e-12 | 34 |
gray matter | 7.98e-12 | 34 |
telencephalon | 7.98e-12 | 34 |
regional part of forebrain | 7.34e-10 | 41 |
forebrain | 7.34e-10 | 41 |
anterior neural tube | 7.34e-10 | 41 |
future forebrain | 7.34e-10 | 41 |
organ system subdivision | 1.33e-09 | 223 |
ectoderm-derived structure | 9.89e-09 | 171 |
ectoderm | 9.89e-09 | 171 |
presumptive ectoderm | 9.89e-09 | 171 |
brain | 2.65e-08 | 68 |
future brain | 2.65e-08 | 68 |
regional part of nervous system | 1.14e-07 | 53 |
regional part of brain | 1.14e-07 | 53 |
neural tube | 2.90e-07 | 56 |
neural rod | 2.90e-07 | 56 |
future spinal cord | 2.90e-07 | 56 |
neural keel | 2.90e-07 | 56 |
duodenum | 9.64e-07 | 2 |