FFCP PHASE1:Hg19::chr21:37432602..37432646,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54093 | |EntrezGene=54093 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1258 | |HGNC=1258 | ||
|TSSclassifier=strong | |||
|UniProt=A8MTS1,C9JIU9,Q9NVD3 | |UniProt=A8MTS1,C9JIU9,Q9NVD3 | ||
|association_with_transcript=0bp_to_ENST00000399205,ENST00000429161,NM_001007259,NR_040088,uc002yuy.2,uc002yuz.2_5end | |association_with_transcript=0bp_to_ENST00000399205,ENST00000429161,NM_001007259,NR_040088,uc002yuy.2,uc002yuz.2_5end | ||
|cluster_id=chr21:37432602..37432646,- | |||
|description=CAGE_peak_2_at_SETD4_5end | |description=CAGE_peak_2_at_SETD4_5end | ||
|id=chr21:37432602..37432646,- | |id=chr21:37432602..37432646,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:14566!7.74e-10!239;DOID:162!1.81e-09!235;DOID:0050687!9.09e-07!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!6.49e-15!94;UBERON:0001016!6.49e-15!94;UBERON:0005743!3.44e-14!86;UBERON:0001017!1.75e-13!82;UBERON:0001869!1.37e-12!32;UBERON:0000955!3.01e-12!69;UBERON:0006238!3.01e-12!69;UBERON:0001893!3.35e-12!34;UBERON:0002020!7.21e-12!34;UBERON:0003528!7.21e-12!34;UBERON:0002791!1.33e-11!33;UBERON:0001049!1.59e-11!57;UBERON:0005068!1.59e-11!57;UBERON:0006241!1.59e-11!57;UBERON:0007135!1.59e-11!57;UBERON:0000924!2.23e-11!173;UBERON:0006601!2.23e-11!173;UBERON:0002619!6.90e-11!22;UBERON:0004121!8.45e-11!169;UBERON:0002780!1.79e-10!41;UBERON:0001890!1.79e-10!41;UBERON:0006240!1.79e-10!41;UBERON:0000956!1.97e-10!25;UBERON:0000203!1.97e-10!25;UBERON:0002346!2.38e-10!90;UBERON:0002616!2.71e-10!59;UBERON:0000033!3.19e-10!123;UBERON:0001950!9.06e-10!20;UBERON:0003075!9.32e-10!86;UBERON:0007284!9.32e-10!86;UBERON:0003080!1.12e-09!42;UBERON:0003056!4.40e-09!61;UBERON:0000153!5.69e-09!129;UBERON:0007811!5.69e-09!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;7.80e-17;22!UBERON:0001869;1.12e-16;32!UBERON:0001893;6.46e-16;34!UBERON:0003528;1.12e-15;34!UBERON:0002020;1.12e-15;34!UBERON:0000956;1.80e-15;25!UBERON:0000203;1.80e-15;25!UBERON:0002791;3.27e-15;32!UBERON:0001950;4.10e-15;20!UBERON:0002780;9.62e-12;41!UBERON:0001890;9.62e-12;41!UBERON:0000073;1.87e-10;53!UBERON:0002616;1.87e-10;53!UBERON:0000955;9.55e-09;68!UBERON:0001017;3.94e-08;75!UBERON:0000200;7.40e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001869,1.73e-18,32;UBERON:0000073,6.09e-18,53;UBERON:0002616,6.09e-18,53;UBERON:0001016,6.15e-18,89;UBERON:0001893,6.75e-18,34;UBERON:0003528,2.11e-17,34;UBERON:0002020,2.11e-17,34;UBERON:0000955,2.40e-17,68;UBERON:0006238,2.40e-17,68;UBERON:0001049,2.89e-17,56;UBERON:0005068,2.89e-17,56;UBERON:0006241,2.89e-17,56;UBERON:0007135,2.89e-17,56;UBERON:0001017,9.78e-17,81;UBERON:0002791,1.07e-16,32;UBERON:0002619,1.62e-16,22;UBERON:0002780,4.20e-16,41;UBERON:0001890,4.20e-16,41;UBERON:0003080,4.20e-16,41;UBERON:0006240,4.20e-16,41;UBERON:0000956,4.09e-15,25;UBERON:0000203,4.09e-15,25;UBERON:0001950,6.96e-15,20;UBERON:0002346,7.08e-13,86;UBERON:0003056,1.71e-12,61;UBERON:0003075,4.97e-12,82;UBERON:0007284,4.97e-12,82;UBERON:0004121,7.59e-12,171;UBERON:0000924,7.59e-12,171;UBERON:0006601,7.59e-12,171;UBERON:0010371,1.00e-11,104;UBERON:0010314,5.62e-09,132;UBERON:0011216,2.12e-08,223;UBERON:0000200,9.73e-07,6 | |||
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| ||
|short_description=p2@SETD4 | |short_description=p2@SETD4 | ||
}} | }} |
Latest revision as of 07:20, 18 September 2015
Short description: | p2@SETD4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SETD4_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000399205, ENST00000429161, NM_001007259, NR_040088, uc002yuy.2, uc002yuz.2_5end |
EntrezGene: | SETD4 |
HGNC: | 1258 |
UniProt: | A8MTS1C9JIU9Q9NVD3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cerebral hemisphere | 1.73e-18 | 32 |
regional part of nervous system | 6.09e-18 | 53 |
regional part of brain | 6.09e-18 | 53 |
nervous system | 6.15e-18 | 89 |
telencephalon | 6.75e-18 | 34 |
brain grey matter | 2.11e-17 | 34 |
gray matter | 2.11e-17 | 34 |
brain | 2.40e-17 | 68 |
future brain | 2.40e-17 | 68 |
neural tube | 2.89e-17 | 56 |
neural rod | 2.89e-17 | 56 |
future spinal cord | 2.89e-17 | 56 |
neural keel | 2.89e-17 | 56 |
central nervous system | 9.78e-17 | 81 |
regional part of telencephalon | 1.07e-16 | 32 |
regional part of cerebral cortex | 1.62e-16 | 22 |
regional part of forebrain | 4.20e-16 | 41 |
forebrain | 4.20e-16 | 41 |
anterior neural tube | 4.20e-16 | 41 |
future forebrain | 4.20e-16 | 41 |
cerebral cortex | 4.09e-15 | 25 |
pallium | 4.09e-15 | 25 |
neocortex | 6.96e-15 | 20 |
neurectoderm | 7.08e-13 | 86 |
pre-chordal neural plate | 1.71e-12 | 61 |
neural plate | 4.97e-12 | 82 |
presumptive neural plate | 4.97e-12 | 82 |
ectoderm-derived structure | 7.59e-12 | 171 |
ectoderm | 7.59e-12 | 171 |
presumptive ectoderm | 7.59e-12 | 171 |
ecto-epithelium | 1.00e-11 | 104 |
structure with developmental contribution from neural crest | 5.62e-09 | 132 |
organ system subdivision | 2.12e-08 | 223 |
gyrus | 9.73e-07 | 6 |