FFCP PHASE1:Hg19::chr6:34524093..34524135,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr6:34524093..34524135,- to FFCP PHASE1:Hg19::chr6:34524093..34524135,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=25803 | |EntrezGene=25803 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17257 | |HGNC=17257 | ||
|TSSclassifier=strong | |||
|UniProt=F5H778,O95238 | |UniProt=F5H778,O95238 | ||
|association_with_transcript=0bp_to_ENST00000544425,NM_001252294,NM_012391_5end | |||
|cluster_id=chr6:34524093..34524135,- | |||
|coexpression_cluster_id=C108 | |||
|description=CAGE_peak_1_at_SPDEF_5end | |||
|id=chr6:34524093..34524135,- | |||
|ontology_enrichment_celltype=CL:0002076!3.71e-19!43;CL:0002368!6.80e-17!13;CL:0000223!8.44e-14!59;CL:0002202!2.96e-11!9;CL:0002632!2.96e-11!9;CL:0000066!3.75e-11!254;CL:0000244!3.24e-07!4;CL:0000731!3.24e-07!4 | |||
|ontology_enrichment_celltype_v019=CL:0002368;4.25e-17;13!CL:0002076;2.43e-10;42!CL:0002202;1.22e-09;9!CL:0002632;1.22e-09;9!CL:0000244;1.40e-09;4!CL:0000731;1.40e-09;4!CL:0000307;2.48e-08;3!CL:0002328;2.76e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002368,4.07e-17,13;CL:0002076,2.23e-13,42;CL:0002202,1.21e-09,9;CL:0002632,1.21e-09,9;CL:0000244,1.43e-09,4;CL:0000731,1.43e-09,4;CL:0000223,2.13e-08,58;CL:0000068,2.45e-08,3;CL:0000069,2.45e-08,3;CL:0000307,2.45e-08,3;CL:0000377,2.45e-08,3;CL:0002328,2.76e-08,3;CL:0000066,9.51e-08,253 | |||
|ontology_enrichment_development_v019=CL:0000377;2.48e-08;3!UBERON:0009847;7.55e-08;3!UBERON:0003353;7.55e-08;3 | |||
|ontology_enrichment_disease=DOID:5093!3.04e-08!4;DOID:1612!3.04e-08!4 | |||
|ontology_enrichment_disease_v019=DOID:5093;5.01e-11;4!DOID:1612;5.01e-11;4!DOID:299;4.54e-07;25 | |||
|ontology_enrichment_disease_v019_2=DOID:5093,5.08e-11,4;DOID:1612,5.08e-11,4;DOID:299,4.35e-07,25 | |||
|ontology_enrichment_uberon=UBERON:0004119!5.84e-28!169;UBERON:0000925!5.84e-28!169;UBERON:0006595!5.84e-28!169;UBERON:0001007!8.15e-22!155;UBERON:0001555!8.15e-22!155;UBERON:0007026!8.15e-22!155;UBERON:0004921!7.48e-21!129;UBERON:0004185!7.48e-21!129;UBERON:0000077!4.42e-17!130;UBERON:0001004!9.25e-15!72;UBERON:0005911!1.31e-12!82;UBERON:0000065!3.61e-12!53;UBERON:0001041!2.99e-11!98;UBERON:0000161!5.18e-11!35;UBERON:0005178!5.75e-11!34;UBERON:0002224!5.75e-11!34;UBERON:0000915!8.21e-11!52;UBERON:0007196!1.05e-10!14;UBERON:0001558!1.05e-10!14;UBERON:0005181!1.66e-10!35;UBERON:0005153!2.76e-09!37;UBERON:0000464!2.66e-08!104;UBERON:0000466!3.53e-08!126;UBERON:0000365!5.74e-08!5;UBERON:0002294!8.83e-08!7;UBERON:0001173!8.83e-08!7;UBERON:0004912!8.83e-08!7;UBERON:0001046!3.03e-07!19;UBERON:0000481!4.23e-07!347;UBERON:0008947!4.71e-07!38;UBERON:0003258!4.71e-07!38;UBERON:0000166!6.97e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0004921;1.83e-15;33!UBERON:0005178;1.73e-10;34!UBERON:0002224;1.73e-10;34!UBERON:0005181;6.98e-10;35!UBERON:0005409;7.34e-10;22!UBERON:0007196;1.42e-09;15!UBERON:0001558;1.42e-09;15!UBERON:0000915;2.03e-09;52!UBERON:0003126;4.83e-09;7!UBERON:0001005;4.83e-09;7!UBERON:0000160;6.94e-09;17!UBERON:0001555;1.67e-08;54!UBERON:0004815;2.76e-08;3!UBERON:0002031;2.76e-08;3!UBERON:0000065;5.94e-08;44!UBERON:0002108;8.41e-08;4!UBERON:0002294;9.12e-08;7!UBERON:0001173;9.12e-08;7!UBERON:0000365;1.20e-07;5!UBERON:0001041;2.29e-07;14 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,5.75e-25,160;UBERON:0000925,5.75e-25,160;UBERON:0006595,5.75e-25,160;UBERON:0004921,3.41e-20,118;UBERON:0001007,1.47e-18,145;UBERON:0001555,1.47e-18,145;UBERON:0007026,1.47e-18,145;UBERON:0000915,4.51e-13,52;UBERON:0000065,4.49e-12,54;UBERON:0001004,7.06e-12,74;UBERON:0005178,9.77e-12,34;UBERON:0002224,9.77e-12,34;UBERON:0005181,2.73e-11,35;UBERON:0001041,5.74e-11,87;UBERON:0007196,1.41e-09,15;UBERON:0001558,1.41e-09,15;UBERON:0003126,4.79e-09,7;UBERON:0001005,4.79e-09,7;UBERON:0000160,7.49e-09,17;UBERON:0005153,7.91e-09,37;UBERON:0005409,2.04e-08,25;UBERON:0005911,2.20e-08,82;UBERON:0004815,2.76e-08,3;UBERON:0002031,2.76e-08,3;UBERON:0011216,6.36e-08,223;UBERON:0002108,9.19e-08,4;UBERON:0000365,1.22e-07,5;UBERON:0008947,1.78e-07,38;UBERON:0003258,1.78e-07,38;UBERON:0005157,2.83e-07,47;UBERON:0000161,8.67e-07,36 | |||
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| ||
|short_description=p1@SPDEF | |||
}} | }} |
Latest revision as of 09:35, 18 September 2015
Short description: | p1@SPDEF |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SPDEF_5end |
Coexpression cluster: | C108_breast_hepatoblastoma_MCF7_parotid_salivary_submaxillary_prostate |
Association with transcript: | 0bp_to_ENST00000544425, NM_001252294, NM_012391_5end |
EntrezGene: | SPDEF |
HGNC: | 17257 |
UniProt: | F5H778O95238 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
respiratory epithelial cell | 4.07e-17 | 13 |
endo-epithelial cell | 2.23e-13 | 42 |
epithelial cell of tracheobronchial tree | 1.21e-09 | 9 |
epithelial cell of lower respiratory tract | 1.21e-09 | 9 |
transitional epithelial cell | 1.43e-09 | 4 |
urothelial cell | 1.43e-09 | 4 |
endodermal cell | 2.13e-08 | 58 |
duct epithelial cell | 2.45e-08 | 3 |
branched duct epithelial cell | 2.45e-08 | 3 |
tracheal epithelial cell | 2.45e-08 | 3 |
tracheoblast | 2.45e-08 | 3 |
bronchial epithelial cell | 2.76e-08 | 3 |
epithelial cell | 9.51e-08 | 253 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 5.75e-25 | 160 |
endoderm | 5.75e-25 | 160 |
presumptive endoderm | 5.75e-25 | 160 |
subdivision of digestive tract | 3.41e-20 | 118 |
digestive system | 1.47e-18 | 145 |
digestive tract | 1.47e-18 | 145 |
primitive gut | 1.47e-18 | 145 |
thoracic segment of trunk | 4.51e-13 | 52 |
respiratory tract | 4.49e-12 | 54 |
respiratory system | 7.06e-12 | 74 |
thoracic cavity element | 9.77e-12 | 34 |
thoracic cavity | 9.77e-12 | 34 |
thoracic segment organ | 2.73e-11 | 35 |
foregut | 5.74e-11 | 87 |
tracheobronchial tree | 1.41e-09 | 15 |
lower respiratory tract | 1.41e-09 | 15 |
trachea | 4.79e-09 | 7 |
respiratory airway | 4.79e-09 | 7 |
intestine | 7.49e-09 | 17 |
epithelial bud | 7.91e-09 | 37 |
gastrointestinal system | 2.04e-08 | 25 |
endo-epithelium | 2.20e-08 | 82 |
lower respiratory tract epithelium | 2.76e-08 | 3 |
epithelium of bronchus | 2.76e-08 | 3 |
organ system subdivision | 6.36e-08 | 223 |
small intestine | 9.19e-08 | 4 |
urothelium | 1.22e-07 | 5 |
respiratory primordium | 1.78e-07 | 38 |
endoderm of foregut | 1.78e-07 | 38 |
epithelial fold | 2.83e-07 | 47 |
orifice | 8.67e-07 | 36 |
Ontology term | p-value | n |
---|---|---|
thoracic cancer | 5.08e-11 | 4 |
breast cancer | 5.08e-11 | 4 |
adenocarcinoma | 4.35e-07 | 25 |