FFCP PHASE1:Hg19::chr7:42192092..42192108,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2737 | |EntrezGene=2737 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4319 | |HGNC=4319 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-40bp_to_ENST00000479210,uc011kbg.1_5end | |association_with_transcript=-40bp_to_ENST00000479210,uc011kbg.1_5end | ||
|cluster_id=chr7:42192092..42192108,- | |||
|coexpression_cluster_id=C545 | |||
|description=CAGE_peak_13_at_GLI3_5end | |description=CAGE_peak_13_at_GLI3_5end | ||
|id=chr7:42192092..42192108,- | |id=chr7:42192092..42192108,- | ||
|ontology_enrichment_celltype=CL:0002605!7.26e-18!3;CL:0000047!2.16e-17!8;CL:0002319!3.73e-12!25;CL:0000540!6.11e-09!6;CL:0000031!6.11e-09!6;CL:0000404!6.11e-09!6;CL:0000128!6.56e-08!7;CL:0000126!6.56e-08!7;CL:0000127!6.56e-08!7;CL:0002453!6.56e-08!7 | |ontology_enrichment_celltype=CL:0002605!7.26e-18!3;CL:0000047!2.16e-17!8;CL:0002319!3.73e-12!25;CL:0000540!6.11e-09!6;CL:0000031!6.11e-09!6;CL:0000404!6.11e-09!6;CL:0000128!6.56e-08!7;CL:0000126!6.56e-08!7;CL:0000127!6.56e-08!7;CL:0002453!6.56e-08!7 | ||
|ontology_enrichment_celltype_v019=CL:0002605;4.26e-118;3!CL:0000128;2.50e-51;7!CL:0000126;2.50e-51;7!CL:0000127;2.50e-51;7!CL:0002319;4.28e-24;25!CL:0000243;9.29e-22;15!CL:0000125;9.29e-22;15!CL:0000047;4.66e-21;2!CL:0000095;1.44e-19;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0002605,3.48e-118,3;CL:0000128,2.30e-51,7;CL:0000126,2.30e-51,7;CL:0000127,2.30e-51,7;CL:0002453,2.30e-51,7;CL:0002319,4.16e-24,25;CL:0000243,8.97e-22,15;CL:0000125,8.97e-22,15;CL:0000030,8.97e-22,15;CL:0000339,8.97e-22,15;CL:0000095,1.39e-19,17;CL:0000123,1.39e-19,17;CL:0000133,4.30e-11,59;CL:0000221,2.94e-09,72;CL:0000333,3.98e-09,41 | |||
|ontology_enrichment_development_v019=CL:0000339;9.29e-22;15!CL:0000133;8.80e-11;59 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001869!1.01e-54!32;UBERON:0002780!1.44e-51!41;UBERON:0001890!1.44e-51!41;UBERON:0006240!1.44e-51!41;UBERON:0001893!2.37e-51!34;UBERON:0003080!2.92e-50!42;UBERON:0000956!7.52e-50!25;UBERON:0000203!7.52e-50!25;UBERON:0005743!7.40e-49!86;UBERON:0001017!7.44e-48!82;UBERON:0002791!2.12e-47!33;UBERON:0002020!6.25e-46!34;UBERON:0003528!6.25e-46!34;UBERON:0000073!9.34e-44!94;UBERON:0001016!9.34e-44!94;UBERON:0001049!1.53e-43!57;UBERON:0005068!1.53e-43!57;UBERON:0006241!1.53e-43!57;UBERON:0007135!1.53e-43!57;UBERON:0002616!6.39e-42!59;UBERON:0003056!1.63e-40!61;UBERON:0001950!2.17e-40!20;UBERON:0002619!1.22e-36!22;UBERON:0003075!9.20e-36!86;UBERON:0007284!9.20e-36!86;UBERON:0000955!1.22e-34!69;UBERON:0006238!1.22e-34!69;UBERON:0002346!6.05e-34!90;UBERON:0004121!9.57e-24!169;UBERON:0000033!3.18e-23!123;UBERON:0000924!4.62e-23!173;UBERON:0006601!4.62e-23!173;UBERON:0000153!6.65e-22!129;UBERON:0007811!6.65e-22!129;UBERON:0002021!2.54e-17!5;UBERON:0007023!7.53e-14!115;UBERON:0001871!4.07e-11!7;UBERON:0000025!1.81e-10!194;UBERON:0001872!2.70e-10!5;UBERON:0000064!9.94e-09!219;UBERON:0000200!1.31e-08!6;UBERON:0000483!1.61e-07!309;UBERON:0004111!1.88e-07!241;UBERON:0000119!2.16e-07!312;UBERON:0000477!5.77e-07!286;UBERON:0003112!6.80e-07!1;UBERON:0000032!6.80e-07!1;UBERON:0005253!6.80e-07!1;UBERON:0003128!6.80e-07!1;UBERON:0002241!6.80e-07!1;UBERON:0001703!6.80e-07!1;UBERON:0004761!6.80e-07!1;UBERON:0009617!6.80e-07!1;UBERON:0002902!7.60e-07!1;UBERON:0009899!7.60e-07!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0000956;6.01e-25;25!UBERON:0000203;6.01e-25;25!UBERON:0002791;7.91e-21;32!UBERON:0001869;7.91e-21;32!UBERON:0001893;6.30e-20;34!UBERON:0003528;4.00e-18;34!UBERON:0002020;4.00e-18;34!UBERON:0002780;1.76e-13;41!UBERON:0001890;1.76e-13;41!UBERON:0000073;4.15e-09;53!UBERON:0002616;4.15e-09;53!UBERON:0000955;2.48e-08;68!UBERON:0001871;6.21e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000956,6.01e-25,25;UBERON:0000203,6.01e-25,25;UBERON:0002791,7.79e-20,32;UBERON:0001869,7.79e-20,32;UBERON:0003528,9.52e-19,34;UBERON:0002020,9.52e-19,34;UBERON:0001893,9.52e-19,34;UBERON:0002780,9.39e-16,41;UBERON:0001890,9.39e-16,41;UBERON:0003080,9.39e-16,41;UBERON:0006240,9.39e-16,41;UBERON:0001017,1.45e-12,81;UBERON:0000073,2.04e-12,53;UBERON:0002616,2.04e-12,53;UBERON:0001049,8.46e-12,56;UBERON:0005068,8.46e-12,56;UBERON:0006241,8.46e-12,56;UBERON:0007135,8.46e-12,56;UBERON:0001016,2.13e-11,89;UBERON:0003056,6.67e-11,61;UBERON:0000955,9.88e-10,68;UBERON:0006238,9.88e-10,68;UBERON:0003075,2.64e-08,82;UBERON:0007284,2.64e-08,82;UBERON:0002346,5.98e-08,86;UBERON:0001871,6.39e-07,6 | |||
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|short_description=p13@GLI3 | |short_description=p13@GLI3 | ||
}} | }} |
Latest revision as of 14:53, 18 September 2015
Short description: | p13@GLI3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_13_at_GLI3_5end |
Coexpression cluster: | C545_Astrocyte_Neural_Neurons_parietal_neuroectodermal_occipital_temporal |
Association with transcript: | -40bp_to_ENST00000479210, uc011kbg.1_5end |
EntrezGene: | GLI3 |
HGNC: | 4319 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
astrocyte of the cerebral cortex | 3.48e-118 | 3 |
oligodendrocyte | 2.30e-51 | 7 |
macroglial cell | 2.30e-51 | 7 |
astrocyte | 2.30e-51 | 7 |
oligodendrocyte precursor cell | 2.30e-51 | 7 |
neural cell | 4.16e-24 | 25 |
glial cell (sensu Vertebrata) | 8.97e-22 | 15 |
glial cell | 8.97e-22 | 15 |
glioblast | 8.97e-22 | 15 |
glioblast (sensu Vertebrata) | 8.97e-22 | 15 |
neuron associated cell | 1.39e-19 | 17 |
neuron associated cell (sensu Vertebrata) | 1.39e-19 | 17 |
neurectodermal cell | 4.30e-11 | 59 |
ectodermal cell | 2.94e-09 | 72 |
migratory neural crest cell | 3.98e-09 | 41 |
Ontology term | p-value | n |
---|---|---|
cerebral cortex | 6.01e-25 | 25 |
pallium | 6.01e-25 | 25 |
regional part of telencephalon | 7.79e-20 | 32 |
cerebral hemisphere | 7.79e-20 | 32 |
brain grey matter | 9.52e-19 | 34 |
gray matter | 9.52e-19 | 34 |
telencephalon | 9.52e-19 | 34 |
regional part of forebrain | 9.39e-16 | 41 |
forebrain | 9.39e-16 | 41 |
anterior neural tube | 9.39e-16 | 41 |
future forebrain | 9.39e-16 | 41 |
central nervous system | 1.45e-12 | 81 |
regional part of nervous system | 2.04e-12 | 53 |
regional part of brain | 2.04e-12 | 53 |
neural tube | 8.46e-12 | 56 |
neural rod | 8.46e-12 | 56 |
future spinal cord | 8.46e-12 | 56 |
neural keel | 8.46e-12 | 56 |
nervous system | 2.13e-11 | 89 |
pre-chordal neural plate | 6.67e-11 | 61 |
brain | 9.88e-10 | 68 |
future brain | 9.88e-10 | 68 |
neural plate | 2.64e-08 | 82 |
presumptive neural plate | 2.64e-08 | 82 |
neurectoderm | 5.98e-08 | 86 |
temporal lobe | 6.39e-07 | 6 |