FFCP PHASE1:Hg19::chr2:86947406..86947434,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr2:86947406..86947434,+ to FFCP PHASE1:Hg19::chr2:86947406..86947434,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=64795 | |EntrezGene=64795 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25850 | |HGNC=25850 | ||
|TSSclassifier=strong | |||
|UniProt=Q9H871 | |UniProt=Q9H871 | ||
|association_with_transcript=0bp_to_NM_022780,uc002srr.2,uc002srs.3,uc010ytm.1_5end | |||
|cluster_id=chr2:86947406..86947434,+ | |||
|description=CAGE_peak_1_at_RMND5A_5end | |||
|id=chr2:86947406..86947434,+ | |||
|ontology_enrichment_celltype=CL:0000037!2.47e-13!172;CL:0000566!2.47e-13!172;CL:0002032!1.21e-12!165;CL:0000837!1.21e-12!165;CL:0000988!1.03e-11!182;CL:0000763!1.41e-10!112;CL:0000049!1.41e-10!112;CL:0000738!5.48e-07!140 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,7.40e-14,168;CL:0002032,3.65e-13,161;CL:0000837,3.65e-13,161;CL:0000988,2.97e-12,177;CL:0000763,3.60e-11,108;CL:0000049,3.60e-11,108;CL:0000738,2.37e-07,136 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1240!8.92e-10!39;DOID:162!2.63e-09!235;DOID:2531!3.09e-09!51;DOID:0060083!3.09e-09!51;DOID:14566!2.97e-08!239;DOID:8692!5.47e-08!31;DOID:0050686!7.27e-07!137 | |||
|ontology_enrichment_disease_v019=DOID:8692;1.40e-07;31!DOID:1240;2.03e-07;39 | |||
|ontology_enrichment_disease_v019_2=DOID:1240,8.90e-10,39;DOID:162,2.85e-09,235;DOID:2531,3.08e-09,51;DOID:0060083,3.08e-09,51;DOID:14566,3.15e-08,239;DOID:8692,5.46e-08,31;DOID:0050686,7.85e-07,137 | |||
|ontology_enrichment_uberon=UBERON:0007023!5.26e-17!115;UBERON:0000073!3.07e-09!94;UBERON:0001016!3.07e-09!94;UBERON:0001017!1.18e-08!82;UBERON:0001049!3.53e-08!57;UBERON:0005068!3.53e-08!57;UBERON:0006241!3.53e-08!57;UBERON:0007135!3.53e-08!57;UBERON:0003080!3.56e-08!42;UBERON:0002780!4.65e-08!41;UBERON:0001890!4.65e-08!41;UBERON:0006240!4.65e-08!41;UBERON:0005743!5.80e-08!86;UBERON:0000955!1.87e-07!69;UBERON:0006238!1.87e-07!69;UBERON:0002346!5.28e-07!90;UBERON:0002616!7.57e-07!59 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,4.16e-17,114;UBERON:0001016,7.70e-10,89;UBERON:0001017,1.56e-08,81;UBERON:0000073,4.07e-08,53;UBERON:0002616,4.07e-08,53;UBERON:0002780,4.64e-08,41;UBERON:0001890,4.64e-08,41;UBERON:0003080,4.64e-08,41;UBERON:0006240,4.64e-08,41;UBERON:0001049,4.65e-08,56;UBERON:0005068,4.65e-08,56;UBERON:0006241,4.65e-08,56;UBERON:0007135,4.65e-08,56;UBERON:0000955,2.46e-07,68;UBERON:0006238,2.46e-07,68 | |||
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| ||
|short_description=p1@RMND5A | |||
}} | }} |
Latest revision as of 19:25, 18 September 2015
Short description: | p1@RMND5A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RMND5A_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_NM_022780, uc002srr.2, uc002srs.3, uc010ytm.1_5end |
EntrezGene: | RMND5A |
HGNC: | 25850 |
UniProt: | Q9H871 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 7.40e-14 | 168 |
hematopoietic oligopotent progenitor cell | 3.65e-13 | 161 |
hematopoietic multipotent progenitor cell | 3.65e-13 | 161 |
hematopoietic cell | 2.97e-12 | 177 |
myeloid cell | 3.60e-11 | 108 |
common myeloid progenitor | 3.60e-11 | 108 |
leukocyte | 2.37e-07 | 136 |
Ontology term | p-value | n |
---|---|---|
adult organism | 4.16e-17 | 114 |
nervous system | 7.70e-10 | 89 |
central nervous system | 1.56e-08 | 81 |
regional part of nervous system | 4.07e-08 | 53 |
regional part of brain | 4.07e-08 | 53 |
regional part of forebrain | 4.64e-08 | 41 |
forebrain | 4.64e-08 | 41 |
anterior neural tube | 4.64e-08 | 41 |
future forebrain | 4.64e-08 | 41 |
neural tube | 4.65e-08 | 56 |
neural rod | 4.65e-08 | 56 |
future spinal cord | 4.65e-08 | 56 |
neural keel | 4.65e-08 | 56 |
brain | 2.46e-07 | 68 |
future brain | 2.46e-07 | 68 |
Ontology term | p-value | n |
---|---|---|
leukemia | 8.90e-10 | 39 |
cancer | 2.85e-09 | 235 |
hematologic cancer | 3.08e-09 | 51 |
immune system cancer | 3.08e-09 | 51 |
disease of cellular proliferation | 3.15e-08 | 239 |
myeloid leukemia | 5.46e-08 | 31 |
organ system cancer | 7.85e-07 | 137 |