FFCP PHASE1:Hg19::chr4:7941518..7941593,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr4:7941518..7941593,-
|short_description=p1@AFAP1
|description=CAGE_peak_1_at_AFAP1_5end
|association_with_transcript=59bp_to_ENST00000358461,ENST00000420658,...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=60312 | |EntrezGene=60312 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24017 | |HGNC=24017 | ||
|TSSclassifier=strong | |||
|UniProt=Q8N556,E9PDT7,B4DMU2,Q6ZRV0 | |UniProt=Q8N556,E9PDT7,B4DMU2,Q6ZRV0 | ||
|association_with_transcript=59bp_to_ENST00000358461,ENST00000420658,NM_001134647,NM_198595,uc003gkg.1,uc011bwk.1_5end | |||
|cluster_id=chr4:7941518..7941593,- | |||
|description=CAGE_peak_1_at_AFAP1_5end | |||
|id=chr4:7941518..7941593,- | |||
|ontology_enrichment_celltype=CL:0000055!7.60e-28!180;CL:0000222!8.01e-25!119;CL:0000220!9.22e-18!246;CL:0002321!2.86e-17!248;CL:0000183!1.19e-16!59;CL:0000359!7.09e-16!32;CL:0000192!8.29e-16!42;CL:0000514!8.29e-16!42;CL:0000187!2.69e-15!54;CL:0000057!6.69e-15!75;CL:0000680!1.99e-14!57;CL:0000056!1.99e-14!57;CL:0000355!1.99e-14!57;CL:0000393!3.24e-14!60;CL:0000211!3.24e-14!60;CL:0000213!2.26e-10!57;CL:0000215!2.26e-10!57;CL:0002494!5.30e-08!16;CL:0002078!7.03e-07!44 | |||
|ontology_enrichment_celltype_v019=CL:0000359;5.48e-15;32!CL:0000192;3.96e-12;43!CL:0000187;1.20e-08;55!CL:0002494;5.13e-08;16!CL:0000393;1.59e-07;61!CL:0000211;1.59e-07;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,1.39e-25,121;CL:0002321,6.41e-18,250;CL:0000192,3.96e-16,43;CL:0000514,3.96e-16,43;CL:0000359,6.67e-16,32;CL:0000187,1.27e-15,55;CL:0000057,1.76e-15,76;CL:0000680,9.51e-15,58;CL:0000056,9.51e-15,58;CL:0000355,9.51e-15,58;CL:0000393,1.55e-14,61;CL:0000211,1.55e-14,61;CL:0000213,1.00e-10,58;CL:0000215,1.00e-10,58;CL:0002494,5.16e-08,16;CL:0002078,3.57e-07,45 | |||
|ontology_enrichment_development_v019=CL:0000514;3.96e-12;43!CL:0000355;5.16e-08;58!CL:0000222;2.12e-07;121 | |||
|ontology_enrichment_disease=DOID:2394!5.51e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;5.53e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,5.38e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0002049!6.23e-27!79;UBERON:0007798!6.23e-27!79;UBERON:0004872!6.44e-25!84;UBERON:0000055!1.58e-23!69;UBERON:0004535!2.97e-23!110;UBERON:0003914!5.51e-23!118;UBERON:0001981!2.16e-22!60;UBERON:0007500!2.16e-22!60;UBERON:0004537!2.16e-22!60;UBERON:0006965!2.16e-22!60;UBERON:0001009!3.37e-22!113;UBERON:0001637!5.88e-20!42;UBERON:0003509!5.88e-20!42;UBERON:0004572!5.88e-20!42;UBERON:0000477!4.55e-17!286;UBERON:0004573!3.68e-16!33;UBERON:0004571!3.68e-16!33;UBERON:0000119!1.58e-15!312;UBERON:0000483!7.61e-15!309;UBERON:0000490!1.16e-14!138;UBERON:0004111!1.85e-14!241;UBERON:0005256!5.62e-14!143;UBERON:0000481!6.98e-14!347;UBERON:0001134!1.32e-13!61;UBERON:0002036!1.32e-13!61;UBERON:0003082!1.32e-13!61;UBERON:0002385!1.49e-13!63;UBERON:0001015!1.49e-13!63;UBERON:0000383!1.49e-13!63;UBERON:0000025!4.03e-13!194;UBERON:0000468!4.24e-13!659;UBERON:0000475!1.20e-12!365;UBERON:0004290!2.02e-12!70;UBERON:0000914!2.42e-12!83;UBERON:0002329!2.42e-12!83;UBERON:0003077!2.42e-12!83;UBERON:0003059!2.42e-12!83;UBERON:0007282!2.42e-12!83;UBERON:0009618!2.42e-12!83;UBERON:0007285!2.42e-12!83;UBERON:0002100!7.12e-12!216;UBERON:0000486!7.23e-12!82;UBERON:0000467!6.60e-11!625;UBERON:0000480!1.15e-10!626;UBERON:0003104!5.37e-10!238;UBERON:0009142!5.37e-10!238;UBERON:0000947!1.48e-09!21;UBERON:0010191!1.48e-09!21;UBERON:0000948!8.20e-08!24;UBERON:0005498!8.20e-08!24;UBERON:0004140!8.20e-08!24;UBERON:0009881!8.20e-08!24;UBERON:0004141!8.20e-08!24;UBERON:0003084!8.20e-08!24;UBERON:0007005!8.20e-08!24;UBERON:0004139!8.20e-08!24;UBERON:0004291!8.20e-08!24;UBERON:0002050!1.68e-07!605;UBERON:0005423!1.68e-07!605;UBERON:0000923!2.27e-07!604;UBERON:0005291!2.27e-07!604;UBERON:0006598!2.27e-07!604;UBERON:0002532!2.27e-07!604;UBERON:0000922!3.69e-07!612;UBERON:0003886!8.02e-07!63;UBERON:0001048!8.66e-07!168 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;1.32e-14;33!UBERON:0004571;1.32e-14;33!UBERON:0001637;1.96e-14;42!UBERON:0003509;1.96e-14;42!UBERON:0004572;1.96e-14;42!UBERON:0007500;3.98e-12;56!UBERON:0001981;3.98e-12;56!UBERON:0004537;3.98e-12;56!UBERON:0000055;1.10e-10;65!UBERON:0002049;1.63e-10;75!UBERON:0007798;1.63e-10;75!UBERON:0003914;1.43e-09;74!UBERON:0000947;1.47e-09;21!UBERON:0010191;1.47e-09;21!UBERON:0000948;5.61e-07;22!UBERON:0004535;6.92e-07;109 | |||
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| ||
|short_description=p1@AFAP1 | |||
}} | }} |
Latest revision as of 20:24, 18 September 2015
Short description: | p1@AFAP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_AFAP1_5end |
Coexpression cluster: | NA |
Association with transcript: | 59bp_to_ENST00000358461, ENST00000420658, NM_001134647, NM_198595, uc003gkg.1, uc011bwk.1_5end |
EntrezGene: | AFAP1 |
HGNC: | 24017 |
UniProt: | Q8N556E9PDT7B4DMU2Q6ZRV0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 1.39e-25 | 121 |
embryonic cell | 6.41e-18 | 250 |
smooth muscle cell | 3.96e-16 | 43 |
smooth muscle myoblast | 3.96e-16 | 43 |
vascular associated smooth muscle cell | 6.67e-16 | 32 |
muscle cell | 1.27e-15 | 55 |
fibroblast | 1.76e-15 | 76 |
muscle precursor cell | 9.51e-15 | 58 |
myoblast | 9.51e-15 | 58 |
multi-potent skeletal muscle stem cell | 9.51e-15 | 58 |
electrically responsive cell | 1.55e-14 | 61 |
electrically active cell | 1.55e-14 | 61 |
lining cell | 1.00e-10 | 58 |
barrier cell | 1.00e-10 | 58 |
cardiocyte | 5.16e-08 | 16 |
meso-epithelial cell | 3.57e-07 | 45 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 5.38e-07 | 14 |