FFCP PHASE1:Hg19::chr21:47545812..47545838,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1292 | |EntrezGene=1292 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=2212 | |HGNC=2212 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-58bp_to_AL360197_5end | |association_with_transcript=-58bp_to_AL360197_5end | ||
|cluster_id=chr21:47545812..47545838,+ | |||
|coexpression_cluster_id=C198 | |||
|description=CAGE_peak_22_at_COL6A2_5end | |description=CAGE_peak_22_at_COL6A2_5end | ||
|id=chr21:47545812..47545838,+ | |id=chr21:47545812..47545838,+ | ||
|ontology_enrichment_celltype=CL:0000055!2.18e-43!180;CL:0000057!3.11e-25!75;CL:0000680!4.22e-21!57;CL:0000056!4.22e-21!57;CL:0000355!4.22e-21!57;CL:0000187!2.41e-20!54;CL:0000183!3.38e-19!59;CL:0000393!4.81e-18!60;CL:0000211!4.81e-18!60;CL:0000192!1.43e-15!42;CL:0000514!1.43e-15!42;CL:0000048!2.36e-15!430;CL:0000723!2.62e-14!436;CL:0000034!6.59e-14!444;CL:0000359!1.65e-12!32;CL:0002620!2.98e-10!23;CL:0000499!7.31e-08!27;CL:0002334!2.95e-07!12;CL:0002371!3.92e-07!591;CL:0002570!8.78e-07!8 | |ontology_enrichment_celltype=CL:0000055!2.18e-43!180;CL:0000057!3.11e-25!75;CL:0000680!4.22e-21!57;CL:0000056!4.22e-21!57;CL:0000355!4.22e-21!57;CL:0000187!2.41e-20!54;CL:0000183!3.38e-19!59;CL:0000393!4.81e-18!60;CL:0000211!4.81e-18!60;CL:0000192!1.43e-15!42;CL:0000514!1.43e-15!42;CL:0000048!2.36e-15!430;CL:0000723!2.62e-14!436;CL:0000034!6.59e-14!444;CL:0000359!1.65e-12!32;CL:0002620!2.98e-10!23;CL:0000499!7.31e-08!27;CL:0002334!2.95e-07!12;CL:0002371!3.92e-07!591;CL:0002570!8.78e-07!8 | ||
|ontology_enrichment_celltype_v019=CL:0000057;2.28e-09;73!CL:0000187;7.98e-09;55!CL:0000359;1.02e-08;32!CL:0000723;1.21e-08;61!CL:0000393;1.23e-08;61!CL:0000211;1.23e-08;61!CL:0002570;1.47e-08;8!CL:0000134;1.68e-08;55!CL:0000192;2.03e-08;43!CL:0000048;5.88e-08;58!CL:0000188;1.12e-07;9!CL:0002620;1.20e-07;23!CL:0002320;1.39e-07;188!CL:0000499;1.99e-07;28!CL:0002552;5.08e-07;5!CL:0000034;5.17e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,3.55e-22,76;CL:0000048,9.22e-18,427;CL:0000723,4.80e-17,433;CL:0000187,1.27e-16,55;CL:0000034,4.00e-16,441;CL:0000680,3.09e-15,58;CL:0000056,3.09e-15,58;CL:0000355,3.09e-15,58;CL:0000393,5.35e-14,61;CL:0000211,5.35e-14,61;CL:0000192,3.26e-11,43;CL:0000514,3.26e-11,43;CL:0002320,4.70e-10,361;CL:0000359,3.34e-09,32;CL:0002570,2.52e-08,8;CL:0000188,6.26e-08,9;CL:0000134,8.63e-08,354;CL:0002620,1.33e-07,23;CL:0000499,2.03e-07,28;CL:0002552,6.59e-07,5 | |||
|ontology_enrichment_development_v019=CL:0000514;2.03e-08;43!CL:0000355;3.07e-08;58 | |||
|ontology_enrichment_disease=DOID:2394!1.59e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;9.96e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.93e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0004290!2.97e-24!70;UBERON:0000914!6.16e-24!83;UBERON:0002329!6.16e-24!83;UBERON:0003077!6.16e-24!83;UBERON:0003059!6.16e-24!83;UBERON:0007282!6.16e-24!83;UBERON:0009618!6.16e-24!83;UBERON:0007285!6.16e-24!83;UBERON:0002385!8.98e-20!63;UBERON:0001015!8.98e-20!63;UBERON:0000383!8.98e-20!63;UBERON:0000486!2.13e-19!82;UBERON:0001134!2.42e-19!61;UBERON:0002036!2.42e-19!61;UBERON:0003082!2.42e-19!61;UBERON:0005256!2.07e-15!143;UBERON:0002199!8.20e-10!45;UBERON:0002416!8.20e-10!45;UBERON:0003102!9.97e-10!95;UBERON:0002100!1.28e-09!216;UBERON:0004872!1.84e-09!84;UBERON:0001013!2.88e-08!14;UBERON:0001637!3.33e-08!42;UBERON:0003509!3.33e-08!42;UBERON:0004572!3.33e-08!42;UBERON:0004573!2.39e-07!33;UBERON:0004571!2.39e-07!33;UBERON:0000490!3.15e-07!138;UBERON:0002097!3.65e-07!40;UBERON:0000475!3.85e-07!365;UBERON:0002049!5.40e-07!79;UBERON:0007798!5.40e-07!79;UBERON:0001009!6.79e-07!113;UBERON:0004535!7.89e-07!110 | |||
|ontology_enrichment_uberon_v019=UBERON:0001013;2.47e-10;14!UBERON:0004905;8.42e-09;8!UBERON:0000982;8.42e-09;8!UBERON:0004770;8.42e-09;8!UBERON:0002199;1.23e-08;46!UBERON:0002416;1.23e-08;46!UBERON:0002384;5.14e-08;198!UBERON:0011135;7.80e-08;5!UBERON:0002216;7.80e-08;5!UBERON:0011134;7.80e-08;5!UBERON:0002209;7.80e-08;5!UBERON:0002213;7.80e-08;5!UBERON:0007844;7.80e-08;5!UBERON:0011138;7.80e-08;5!UBERON:0001130;7.80e-08;5!UBERON:0001066;7.80e-08;5!UBERON:0001468;7.80e-08;5!UBERON:0002072;1.10e-07;5!UBERON:0003102;3.90e-07;50 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,1.62e-18,73;UBERON:0002329,3.34e-18,71;UBERON:0003059,3.34e-18,71;UBERON:0007282,3.34e-18,71;UBERON:0004290,3.34e-18,71;UBERON:0009618,3.34e-18,71;UBERON:0003077,8.90e-18,72;UBERON:0007285,8.90e-18,72;UBERON:0000486,5.10e-16,83;UBERON:0007503,1.80e-15,78;UBERON:0003104,1.76e-14,160;UBERON:0009142,1.76e-14,160;UBERON:0005256,5.65e-14,122;UBERON:0002385,8.27e-14,64;UBERON:0001015,8.27e-14,64;UBERON:0000383,8.27e-14,64;UBERON:0001134,1.30e-13,62;UBERON:0002036,1.30e-13,62;UBERON:0003082,1.30e-13,62;UBERON:0002199,4.79e-12,46;UBERON:0002416,4.79e-12,46;UBERON:0003102,7.51e-12,99;UBERON:0001013,4.62e-10,14;UBERON:0002384,5.02e-10,371;UBERON:0004905,9.12e-09,8;UBERON:0000982,9.12e-09,8;UBERON:0004770,9.12e-09,8;UBERON:0000926,1.30e-08,315;UBERON:0004120,1.30e-08,315;UBERON:0006603,1.30e-08,315;UBERON:0002097,3.87e-08,41;UBERON:0000490,5.12e-08,148;UBERON:0011135,8.49e-08,5;UBERON:0002216,8.49e-08,5;UBERON:0011134,8.49e-08,5;UBERON:0002209,8.49e-08,5;UBERON:0002213,8.49e-08,5;UBERON:0005856,8.49e-08,5;UBERON:0005866,8.49e-08,5;UBERON:0005863,8.49e-08,5;UBERON:0007844,8.49e-08,5;UBERON:0011138,8.49e-08,5;UBERON:0001130,8.49e-08,5;UBERON:0001066,8.49e-08,5;UBERON:0001468,8.49e-08,5;UBERON:0001637,1.25e-07,42;UBERON:0003509,1.25e-07,42;UBERON:0004572,1.25e-07,42;UBERON:0002072,1.63e-07,5 | |||
|phase1_expression=0.726713517082227,3.63970890614671,0.563817616383885,2.00146596706261,1.78784437770915,0,5.06599756336621,1.26343974685366,2.08948502559871,0,0,0,0,2.22779435328084,4.97096063591874,4.03395087871065,3.61616716814386,2.92124036154949,3.90346239032406,0.123121058076788,0.816002764977012,1.56727360739044,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306083892370903,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255973222308837,0,0,0,0,0.267440195783507,0.144824403882799,2.43806866313962,0.670700859703636,0.255725123687061,1.44575660953827,3.00802746381534,3.0417768981773,0.795285947051099,0.486634870302636,0.0945348171640679,0.221729397462564,0,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.805658634218294,0,0,0,0,0,0,0,0,0,0,0,0,0,2.48485975847659,1.13967460498122,0.926864265692532,4.30254931123221,0.354668382198357,0.560677600142307,1.06748995729705,2.22000793575444,0,1.0776853765575,0.326923806226917,0.605429710579726,1.72852777344,0.70296429550139,2.80944069147288,0.570471821544449,3.88566569434683,1.17434498643765,1.29498355494505,0.842704840213491,1.02077085627447,2.94802361548243,1.34323515528495,4.75201142912821,6.18167323196392,1.82032272387605,1.43723628363248,0.168336113954066,1.00094815897571,0,0,3.37136575378922,1.80285670687916,0.340296549480063,2.15267562826634,1.70845911054854,1.48352330811693,4.20127534518163,1.33968288009971,2.31876486041066,0.558350568994769,1.68776332241266,0.584622030967192,0.757301322732344,1.19664868234989,3.55621325001386,1.06502877754984,0.403008392910561,0.67824236924195,0,0,0,0.121973706129595,0,0.464775771478074,0.10366105501537,0,0,1.56449532329816,17.3675053312079,2.76269842704961,1.39310378409594,1.44375896333917,0,0,0,0,0,0,0,0,0,0,0,2.057870056657,5.88034845542168,0,0,0,0,0,0.171567810298526,0,0,0,0,0.651616610620649,1.03993478527958,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414656231081544,0.144119953416961,0,0.063497894292169,0,0,0,0.719792448923265,0,0.285826432630578,0.224262168690721,0.43596006883328,0.5867062865676,1.29271715757778,21.4593867511129,3.381211010224,0.531876233169741,0,0.514414748524284,0,0.532844358032199,1.28680194292333,4.34097284313154,0.823240336780769,0.977208552881205,1.06617584622764,1.58390374586686,0.602878754119172,0,0.099972991182057,0,0,0,0.718874566474748,1.14861935834114,0,0.579125226670317,0.61642896765115,0.537182889719687,0,0,0.215627574859517,0,0,0,0.773288812777695,0,0,0,0,0,3.18997878469764,2.50085260529839,4.06897535549603,1.87173775377726,2.85486382075459,1.26161932027148,0.468565659970853,1.50473049863859,2.27407504055985,0,0,0.921845842708516,2.69339204851057,0.979005787313703,2.05886054286514,0,0,0.106727557803444,0,0,0.30239029332968,1.24053903909388,0.61384789315225,1.40330047216537,0.384417447767103,0.511707249066704,0.321707842287215,1.48418066444991,5.85996836450091,5.50441348470694,1.39616165223476,6.23105315020345,6.15915005837784,0,0,0,0.803701137152247,5.09855270418808,5.24497659837697,0,0.15403067420883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325378394664303,0.206082023295445,0.27470839445503,0,0,0,1.6068392984416,2.70678011217942,2.46477787383431,2.45605879561807,1.65403886981437,1.28904293841928,1.0151168573996,1.96021243057032,1.51354460599453,0,0,0,0,0.464845549297286,3.46293581513704,0.6970372701606,0.308033580176089,0.532306030317022,0,2.59453906745488,0,0.744316738719335,0.316379424718726,1.33441135746677,0,2.1396949401696,3.5002357271853,2.35484592059769,0.539617372749944,1.92175920815238,0.824686816419805,0.808729926293264,0,0.842516912477962,0.975267478179181,1.94970791705028,4.22600587027022,1.36499911407986,2.2624869112594,2.26016233240486,0.551365343546124,2.65375590096488,1.75380354101505,1.73632660280006,0.655894752046633,1.01455188481352,1.54911749049875,1.12678241012897,0.286822704408103,0.687743287091848,1.426684205925,1.06428319221179,2.32218398827431,4.61012850143863,0.379473173765715,0.699869440489966,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0.191505370132367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.586032717087576,0,0,0,0.47748896947538,0,0,0,0,0.111308705022906,0,0,1.39473591775749,0,0,0,0,1.24415835064723,0.179736702294654,0,0,1.57829449019094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30815439456455,0.341826167541004,0,0,0.108647371922008,0,0.641183153813036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.353830258013357,0,0,0,0,0,0.802577647298789,0,0,0,0,0.394584402849391,2.41981432097328,0,0.379119477770928,0,0,0,0.661983911750998,0,0,0,0.277349346026277,0,0.0979923974143777,0,1.39781334593624,0,0,0,0,0.678923115418936,0,0.90392296312213,0,0,0,0,0,1.28071796843612,0.39961921916426,0,0,0,0,0.124252535565433,0,0,0.104602846312333,0,0.288950589901519,0,0,0,0.429765441419957,0,1.11712960508902,0.458320848023367,0,0,0.429226048136571,0.223171457441873,0.0671834724867263,2.52209918479682,0,0,0,0,0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| ||
|short_description=p22@COL6A2 | |short_description=p22@COL6A2 | ||
}} | }} |
Latest revision as of 23:04, 18 September 2015
Short description: | p22@COL6A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_22_at_COL6A2_5end |
Coexpression cluster: | C198_Mesenchymal_Hair_Hepatic_Fibroblast_Smooth_tenocyte_Pericytes |
Association with transcript: | -58bp_to_AL360197_5end |
EntrezGene: | COL6A2 |
HGNC: | 2212 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 3.55e-22 | 76 |
multi fate stem cell | 9.22e-18 | 427 |
somatic stem cell | 4.80e-17 | 433 |
muscle cell | 1.27e-16 | 55 |
stem cell | 4.00e-16 | 441 |
muscle precursor cell | 3.09e-15 | 58 |
myoblast | 3.09e-15 | 58 |
multi-potent skeletal muscle stem cell | 3.09e-15 | 58 |
electrically responsive cell | 5.35e-14 | 61 |
electrically active cell | 5.35e-14 | 61 |
smooth muscle cell | 3.26e-11 | 43 |
smooth muscle myoblast | 3.26e-11 | 43 |
connective tissue cell | 4.70e-10 | 361 |
vascular associated smooth muscle cell | 3.34e-09 | 32 |
mesenchymal stem cell of adipose | 2.52e-08 | 8 |
cell of skeletal muscle | 6.26e-08 | 9 |
mesenchymal cell | 8.63e-08 | 354 |
skin fibroblast | 1.33e-07 | 23 |
stromal cell | 2.03e-07 | 28 |
fibroblast of gingiva | 6.59e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.93e-07 | 14 |