FFCP PHASE1:Hg19::chr2:187454515..187454520,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3685 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6150 | |||
|TSSclassifier=strong | |||
|UniProt=B4DYQ7,B7ZLX0,P06756 | |||
|association_with_transcript=-269bp_to_ENST00000544640,NM_001145000,NM_002210,uc002upq.2,uc010frs.2_5end | |||
|cluster_id=chr2:187454515..187454520,+ | |||
|description=CAGE_peak_6_at_ITGAV_5end | |||
|id=chr2:187454515..187454520,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006215;6.31e-08;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.97e-20!115;UBERON:0001017!1.18e-16!82;UBERON:0005743!1.68e-15!86;UBERON:0000073!1.02e-14!94;UBERON:0001016!1.02e-14!94;UBERON:0001049!7.45e-14!57;UBERON:0005068!7.45e-14!57;UBERON:0006241!7.45e-14!57;UBERON:0007135!7.45e-14!57;UBERON:0000955!2.55e-13!69;UBERON:0006238!2.55e-13!69;UBERON:0000475!4.30e-13!365;UBERON:0002346!4.69e-13!90;UBERON:0000924!6.80e-13!173;UBERON:0006601!6.80e-13!173;UBERON:0003075!2.96e-12!86;UBERON:0007284!2.96e-12!86;UBERON:0004121!3.76e-12!169;UBERON:0002616!4.66e-12!59;UBERON:0000468!8.65e-12!659;UBERON:0003080!2.24e-10!42;UBERON:0000062!4.21e-10!511;UBERON:0002780!4.72e-10!41;UBERON:0001890!4.72e-10!41;UBERON:0006240!4.72e-10!41;UBERON:0000922!8.52e-10!612;UBERON:0000467!1.34e-09!625;UBERON:0000480!2.05e-09!626;UBERON:0002050!2.67e-09!605;UBERON:0005423!2.67e-09!605;UBERON:0000923!3.53e-09!604;UBERON:0005291!3.53e-09!604;UBERON:0006598!3.53e-09!604;UBERON:0002532!3.53e-09!604;UBERON:0000033!4.22e-09!123;UBERON:0000481!5.89e-09!347;UBERON:0000153!6.42e-09!129;UBERON:0007811!6.42e-09!129;UBERON:0003056!7.58e-08!61;UBERON:0002020!1.26e-07!34;UBERON:0003528!1.26e-07!34;UBERON:0000483!2.39e-07!309;UBERON:0000477!2.52e-07!286;UBERON:0000025!3.74e-07!194;UBERON:0002791!4.83e-07!33;UBERON:0001893!5.35e-07!34;UBERON:0000119!5.92e-07!312 | |||
|ontology_enrichment_uberon_v019=UBERON:0003296;5.66e-09;4!UBERON:0010133;5.66e-09;4!UBERON:0004732;1.55e-07;13!UBERON:0001894;2.15e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,3.43e-19,114;UBERON:0002346,2.95e-14,86;UBERON:0003075,3.62e-14,82;UBERON:0007284,3.62e-14,82;UBERON:0010314,6.95e-13,132;UBERON:0001049,7.84e-12,56;UBERON:0005068,7.84e-12,56;UBERON:0006241,7.84e-12,56;UBERON:0007135,7.84e-12,56;UBERON:0010371,2.11e-10,104;UBERON:0000073,3.35e-10,53;UBERON:0002616,3.35e-10,53;UBERON:0001017,9.14e-10,81;UBERON:0000955,1.68e-09,68;UBERON:0006238,1.68e-09,68;UBERON:0004121,2.63e-09,171;UBERON:0000924,2.63e-09,171;UBERON:0006601,2.63e-09,171;UBERON:0003296,4.27e-09,4;UBERON:0010133,4.27e-09,4;UBERON:0001016,4.31e-09,89;UBERON:0003076,4.85e-08,15;UBERON:0003057,4.85e-08,15;UBERON:0003056,6.56e-08,61;UBERON:0001894,1.14e-07,7;UBERON:0006222,1.14e-07,7;UBERON:0004732,1.78e-07,13 | |||
|phase1_expression=0.726713517082227,0.214100523890983,1.40954404095971,1.0007329835313,0.893922188854576,0,2.53299878168311,0,0.261185628199839,0,0,0,1.31883489114227,0.123766352960047,0.331397375727916,0,0.602694528023977,0.730310090387373,0,0,0,0,0.286235987131057,0.136874425072884,0.627713197974014,0.382067028739756,0,0.0787107813136792,0,0,0.154816123316076,0,0,0.369754010166788,0,0,0,0,0,0,0,0.32389366601898,0.257575567634187,0,0,0,0.232429036905685,0.411167888021826,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0.320929027076094,0,0,0,0,0,0,0,0.251248665256743,0,0.217188844705117,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400395987036012,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.260118695119756,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0,0.361439152384566,0.50133791063589,0.144846518960824,0,0.973269740605272,1.13441780596881,1.10864698731282,0.614843499851882,0.785874452986276,0,0,0,0.174129737299267,0,0,0,0,0.198762407366705,0,0.347140501607594,0.56530794192401,0,0,0.417989933073621,1.03366703667732,0.35576626268671,0,0,0,0.24406205754817,0.367663080345869,0,0,0,0,0,0,0,0,0,0,2.48485975847659,0.25326102332916,0.397227542439656,3.15520282823695,0.709336764396714,1.68203280042692,0,0,0.311211035399766,0.269421344139376,0.653847612453835,0.605429710579726,0,0,0.312160076830321,0,0,0.352303495931295,0.323745888736263,0.421352420106746,0,0.368502951935304,0.516628905878827,0,1.23633464639278,0,0,0.168336113954066,0.500474079487857,0,0,0,1.20190447125277,0.340296549480063,0.538168907066586,0.213557388818567,0,0.600182192168805,0.103052529238439,0.257640540045629,0.37223371266318,0.675105328965065,0.487185025805993,0,0.276149695926898,0.161646056818812,0.355009592516614,0,0.169560592310488,0,0,0,0.243947412259191,0.132529768321485,0.348581828608555,0.207322110030741,0,0,1.56449532329816,0,0,0,0,0,0,0.241011029883482,0.110293972732394,0.653638332277218,0,0.539325232640658,0.392442930250692,0.38474715694639,0.738155454624648,0,0.4115740113314,0,0,0,0.590789906681404,0,0.122988438543114,0.343135620597051,0.219500570817251,0,0.100528972411631,0.370353780634118,0,1.03993478527958,0,0.811512834825538,2.11335649624479,0,0,0.190254152234598,0,0,0.246217006087397,0.468008530278475,0,0,0.839910640994298,0.141775097242386,0.358234090811393,0.871901815541886,0.383382679165211,0,0,0.207328115540772,0.144119953416961,0,0.190493682876507,0,0,0,0.102827492703324,0,0.285826432630578,0,0,0.07333828582095,1.16344544182,0,0,0.26593811658487,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0.599837947092342,0,0.502257091432126,0,0.718874566474748,1.14861935834114,1.42636905040718,0.723906533337896,0.205476322550383,0.179060963239896,0,0,0,0,0.508189248444927,1.30139853857622,0.773288812777695,0.167516265334349,0.637938751653163,0,0,0,0.12269149171914,0.500170521059677,0,0,0.356857977594324,0,1.7571212248907,0,0,0,1.99267679560631,0.553107505625109,0.260650843404249,0,0,0,0,0,0,0,0,1.24053903909388,1.38115775959256,1.12264037773229,0.512556597022804,1.02341449813341,0.965123526861645,1.48418066444991,0.616838775210622,0.532685175939381,0.0821271560138091,1.55776328755086,0.348631135379878,0,1.00253235151642,0.276242966807689,0.229628896329213,0.728364672026868,0.131124414959424,0,0.308061348417659,0,0,0.527758144464379,0,0,1.0795795805107,0,0.270946437543853,0,0,0,0.223874754722178,0,0,0,0,0,0.515205058238611,0.183138929636687,0.082509499920588,0,0.650060246036521,0,0.193341436584244,0.154048617114644,0.15350367472613,0.689182862422653,0.107420244868274,0.145016693914229,0,0.445160178233687,0.495854746082934,0,0.127612712494584,0.50578890427775,0,1.88887408098384,0,0,0.532306030317022,0,0.74129687641568,0.572499546967965,0,0.632758849437452,0.762520775695299,0,0,0.318203247925937,0,0.179872457583315,0,0.353437207037059,0,0,0.421258456238981,0.48763373908959,0.487426979262569,0,0.136499911407986,0.848432591722276,0,0.551365343546124,0.66343897524122,0.438450885253763,0,0.655894752046633,0,0,0,0.573645408816206,0.589494246078727,0.35667105148125,0,0.633322905892992,0.658589785919804,0,0,0,0,1.08890984861323,0.0941438007767792,0.43050537267123,0,0.443430153536676,0.689170200620878,0,0,0,0,0,0,0,0,0.320472213382419,1.92495971052672,0.245040215981032,0,0,0,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223676107892416,0,0,0.278406173895242,0,0,0.33307196799782,0,0.37428108081644,0.146508179271894,0.970884173996107,0,0.284136146806413,0.95497793895076,0.593929361665277,1.84296421259539,2.98244294329889,0.422008249231538,0.556543525114529,0,0.63337622438398,1.9924798825107,0.276283915531148,0,0.511343412510774,0,0.933118762985422,0.539210106883961,0,0,0.591860433821602,0,1.11136990144637,2.90799823828566,1.29875337426592,0,0.260427761085233,0.0874599999961957,0.724999575434793,1.0241410345695,0,1.41832609060762,0.344743373241465,0,0.347249989866585,0,0.241192877250816,4.5774520895125,2.43274371848694,3.25102380848902,0.658156191461918,0.10893846351899,0.139423744278603,0.923403102045565,0.227884111694002,0,0,0.3259421157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| |||
|short_description=p6@ITGAV | |||
}} |
Latest revision as of 23:30, 18 September 2015
Short description: | p6@ITGAV |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_ITGAV_5end |
Coexpression cluster: | NA |
Association with transcript: | -269bp_to_ENST00000544640, NM_001145000, NM_002210, uc002upq.2, uc010frs.2_5end |
EntrezGene: | ITGAV |
HGNC: | 6150 |
UniProt: | B4DYQ7B7ZLX0P06756 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 3.43e-19 | 114 |
neurectoderm | 2.95e-14 | 86 |
neural plate | 3.62e-14 | 82 |
presumptive neural plate | 3.62e-14 | 82 |
structure with developmental contribution from neural crest | 6.95e-13 | 132 |
neural tube | 7.84e-12 | 56 |
neural rod | 7.84e-12 | 56 |
future spinal cord | 7.84e-12 | 56 |
neural keel | 7.84e-12 | 56 |
ecto-epithelium | 2.11e-10 | 104 |
regional part of nervous system | 3.35e-10 | 53 |
regional part of brain | 3.35e-10 | 53 |
central nervous system | 9.14e-10 | 81 |
brain | 1.68e-09 | 68 |
future brain | 1.68e-09 | 68 |
ectoderm-derived structure | 2.63e-09 | 171 |
ectoderm | 2.63e-09 | 171 |
presumptive ectoderm | 2.63e-09 | 171 |
gland of diencephalon | 4.27e-09 | 4 |
neuroendocrine gland | 4.27e-09 | 4 |
nervous system | 4.31e-09 | 89 |
posterior neural tube | 4.85e-08 | 15 |
chordal neural plate | 4.85e-08 | 15 |
pre-chordal neural plate | 6.56e-08 | 61 |
diencephalon | 1.14e-07 | 7 |
future diencephalon | 1.14e-07 | 7 |
segmental subdivision of nervous system | 1.78e-07 | 13 |