FFCP PHASE1:Hg19::chr2:189839090..189839105,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1281 | |EntrezGene=1281 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2201 | |HGNC=2201 | ||
|TSSclassifier=strong | |||
|UniProt=E7ENY8,P02461 | |UniProt=E7ENY8,P02461 | ||
|association_with_transcript=0bp_to_ENST00000317840,NM_000090,uc002uqj.1_5end | |association_with_transcript=0bp_to_ENST00000317840,NM_000090,uc002uqj.1_5end | ||
|cluster_id=chr2:189839090..189839105,+ | |||
|coexpression_cluster_id=C292 | |||
|description=CAGE_peak_1_at_COL3A1_5end | |description=CAGE_peak_1_at_COL3A1_5end | ||
|id=chr2:189839090..189839105,+ | |id=chr2:189839090..189839105,+ | ||
|ontology_enrichment_celltype=CL:0000055!3.86e-33!180;CL:0000057!3.63e-19!75;CL:0000680!2.50e-17!57;CL:0000056!2.50e-17!57;CL:0000355!2.50e-17!57;CL:0000183!3.14e-17!59;CL:0000187!3.48e-17!54;CL:0000393!1.32e-14!60;CL:0000211!1.32e-14!60;CL:0000192!2.73e-13!42;CL:0000514!2.73e-13!42;CL:0000359!2.38e-09!32;CL:0000222!4.63e-08!119;CL:0000136!2.05e-07!15;CL:0002494!8.69e-07!16 | |ontology_enrichment_celltype=CL:0000055!3.86e-33!180;CL:0000057!3.63e-19!75;CL:0000680!2.50e-17!57;CL:0000056!2.50e-17!57;CL:0000355!2.50e-17!57;CL:0000183!3.14e-17!59;CL:0000187!3.48e-17!54;CL:0000393!1.32e-14!60;CL:0000211!1.32e-14!60;CL:0000192!2.73e-13!42;CL:0000514!2.73e-13!42;CL:0000359!2.38e-09!32;CL:0000222!4.63e-08!119;CL:0000136!2.05e-07!15;CL:0002494!8.69e-07!16 | ||
|ontology_enrichment_celltype_v019=CL:0000134;4.63e-11;55!CL:0000187;2.68e-10;55!CL:0000723;3.10e-10;61!CL:0000192;4.06e-10;43!CL:0000048;4.31e-10;58!CL:0000359;4.05e-09;32!CL:0000349;1.22e-08;19!CL:0000393;1.40e-08;61!CL:0000211;1.40e-08;61!CL:0000057;5.93e-08;73!CL:0002320;1.38e-07;188!CL:0000034;2.26e-07;69!CL:0002494;5.19e-07;16!CL:0002620;6.44e-07;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,3.37e-20,76;CL:0000680,2.52e-18,58;CL:0000056,2.52e-18,58;CL:0000355,2.52e-18,58;CL:0000187,3.56e-18,55;CL:0000393,2.24e-15,61;CL:0000211,2.24e-15,61;CL:0000192,4.16e-14,43;CL:0000514,4.16e-14,43;CL:0000359,1.11e-09,32;CL:0000349,1.23e-08,19;CL:0000222,7.92e-08,121;CL:0000136,1.16e-07,15;CL:0002494,5.21e-07,16;CL:0002620,6.33e-07,23 | |||
|ontology_enrichment_development_v019=CL:0000514;4.06e-10;43!CL:0000355;4.61e-10;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!3.42e-20!83;UBERON:0002329!3.42e-20!83;UBERON:0003077!3.42e-20!83;UBERON:0003059!3.42e-20!83;UBERON:0007282!3.42e-20!83;UBERON:0009618!3.42e-20!83;UBERON:0007285!3.42e-20!83;UBERON:0004290!3.33e-19!70;UBERON:0002385!1.97e-18!63;UBERON:0001015!1.97e-18!63;UBERON:0000383!1.97e-18!63;UBERON:0001134!2.41e-18!61;UBERON:0002036!2.41e-18!61;UBERON:0003082!2.41e-18!61;UBERON:0005256!1.88e-16!143;UBERON:0000486!2.11e-14!82;UBERON:0000481!5.18e-13!347;UBERON:0000475!6.50e-12!365;UBERON:0002100!1.47e-11!216;UBERON:0003104!1.88e-11!238;UBERON:0009142!1.88e-11!238;UBERON:0004872!9.20e-11!84;UBERON:0000468!1.22e-10!659;UBERON:0000490!2.46e-08!138;UBERON:0000948!5.05e-08!24;UBERON:0005498!5.05e-08!24;UBERON:0004140!5.05e-08!24;UBERON:0009881!5.05e-08!24;UBERON:0004141!5.05e-08!24;UBERON:0003084!5.05e-08!24;UBERON:0007005!5.05e-08!24;UBERON:0004139!5.05e-08!24;UBERON:0004291!5.05e-08!24;UBERON:0007100!5.50e-08!27;UBERON:0001013!2.31e-07!14;UBERON:0004923!5.00e-07!57;UBERON:0000478!5.09e-07!24;UBERON:0003914!9.13e-07!118 | |||
|ontology_enrichment_uberon_v019=UBERON:0002385;1.00e-08;31!UBERON:0001015;1.00e-08;31!UBERON:0000383;1.00e-08;31!UBERON:0002384;6.42e-08;198!UBERON:0001013;1.31e-07;14!UBERON:0000948;1.68e-07;22!UBERON:0007100;1.77e-07;25!UBERON:0000478;4.21e-07;24 | |||
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| ||
|short_description=p1@COL3A1 | |short_description=p1@COL3A1 | ||
}} | }} |
Latest revision as of 01:01, 19 September 2015
Short description: | p1@COL3A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_COL3A1_5end |
Coexpression cluster: | C292_Mesenchymal_skin_umbilical_Adipocyte_mesenchymal_Chondrocyte_skeletal |
Association with transcript: | 0bp_to_ENST00000317840, NM_000090, uc002uqj.1_5end |
EntrezGene: | COL3A1 |
HGNC: | 2201 |
UniProt: | E7ENY8P02461 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 3.37e-20 | 76 |
muscle precursor cell | 2.52e-18 | 58 |
myoblast | 2.52e-18 | 58 |
multi-potent skeletal muscle stem cell | 2.52e-18 | 58 |
muscle cell | 3.56e-18 | 55 |
electrically responsive cell | 2.24e-15 | 61 |
electrically active cell | 2.24e-15 | 61 |
smooth muscle cell | 4.16e-14 | 43 |
smooth muscle myoblast | 4.16e-14 | 43 |
vascular associated smooth muscle cell | 1.11e-09 | 32 |
extraembryonic cell | 1.23e-08 | 19 |
mesodermal cell | 7.92e-08 | 121 |
fat cell | 1.16e-07 | 15 |
cardiocyte | 5.21e-07 | 16 |
skin fibroblast | 6.33e-07 | 23 |