FFCP PHASE1:Hg19::chr4:87515454..87515486,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr4:87515454..87515486,+
|short_description=p1@PTPN13
|description=CAGE_peak_1_at_PTPN13_5end
|association_with_transcript=0bp_to_ENST00000427191,ENST000004369...") |
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(11 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5783 | |EntrezGene=5783 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9646 | |HGNC=9646 | ||
|TSSclassifier=strong | |||
|UniProt=Q12923,D6R9M4 | |UniProt=Q12923,D6R9M4 | ||
|association_with_transcript=0bp_to_ENST00000427191,ENST00000436978,ENST00000502971,NM_006264,NM_080683,NM_080684,NM_080685,uc003hpy.2,uc003hpz.2,uc003hqa.2,uc003hqb.2_5end | |||
|cluster_id=chr4:87515454..87515486,+ | |||
|coexpression_cluster_id=C2797 | |||
|description=CAGE_peak_1_at_PTPN13_5end | |||
|id=chr4:87515454..87515486,+ | |||
|ontology_enrichment_celltype=CL:0002620!6.78e-09!23;CL:0000057!2.19e-08!75;CL:0000055!1.00e-07!180 | |||
|ontology_enrichment_celltype_v019=CL:0002620;7.14e-09;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0002620,6.15e-09,23;CL:0000057,2.35e-08,76 | |||
|ontology_enrichment_development_v019=UBERON:0006601;2.31e-07;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000924!2.01e-24!173;UBERON:0006601!2.01e-24!173;UBERON:0004121!2.73e-22!169;UBERON:0000475!2.26e-20!365;UBERON:0000033!1.18e-19!123;UBERON:0000153!3.43e-19!129;UBERON:0007811!3.43e-19!129;UBERON:0000073!3.02e-16!94;UBERON:0001016!3.02e-16!94;UBERON:0003102!5.01e-16!95;UBERON:0005743!2.37e-14!86;UBERON:0001017!4.86e-14!82;UBERON:0002346!4.68e-13!90;UBERON:0001049!6.87e-12!57;UBERON:0005068!6.87e-12!57;UBERON:0006241!6.87e-12!57;UBERON:0007135!6.87e-12!57;UBERON:0000955!1.13e-11!69;UBERON:0006238!1.13e-11!69;UBERON:0002616!2.32e-11!59;UBERON:0003075!3.71e-11!86;UBERON:0007284!3.71e-11!86;UBERON:0003056!4.37e-11!61;UBERON:0002780!6.44e-11!41;UBERON:0001890!6.44e-11!41;UBERON:0006240!6.44e-11!41;UBERON:0003080!1.62e-10!42;UBERON:0007023!2.10e-09!115;UBERON:0000481!2.28e-09!347;UBERON:0000468!3.73e-09!659;UBERON:0001444!7.24e-09!48;UBERON:0002097!8.66e-09!40;UBERON:0002199!2.09e-08!45;UBERON:0002416!2.09e-08!45;UBERON:0002020!6.15e-08!34;UBERON:0003528!6.15e-08!34;UBERON:0000165!6.40e-08!28;UBERON:0000930!6.40e-08!28;UBERON:0001893!7.30e-08!34;UBERON:0002791!9.88e-08!33;UBERON:0000064!1.71e-07!219;UBERON:0000062!2.03e-07!511;UBERON:0000161!3.42e-07!35;UBERON:0001869!4.76e-07!32 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;2.46e-08;41!UBERON:0001890;2.46e-08;41!UBERON:0000165;5.91e-08;28!UBERON:0000073;1.32e-07;53!UBERON:0002616;1.32e-07;53!UBERON:0003528;6.10e-07;34!UBERON:0002020;6.10e-07;34!UBERON:0001893;7.37e-07;34!UBERON:0002097;8.80e-07;41!UBERON:0002791;8.93e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,3.34e-27,171;UBERON:0000924,3.34e-27,171;UBERON:0006601,3.34e-27,171;UBERON:0003102,4.44e-17,99;UBERON:0001016,2.96e-16,89;UBERON:0010371,4.71e-16,104;UBERON:0002346,2.84e-15,86;UBERON:0001017,2.37e-14,81;UBERON:0010314,3.81e-14,132;UBERON:0003075,3.32e-13,82;UBERON:0007284,3.32e-13,82;UBERON:0001049,2.64e-12,56;UBERON:0005068,2.64e-12,56;UBERON:0006241,2.64e-12,56;UBERON:0007135,2.64e-12,56;UBERON:0000955,5.75e-12,68;UBERON:0006238,5.75e-12,68;UBERON:0003056,8.31e-12,61;UBERON:0011216,1.98e-11,223;UBERON:0000073,2.06e-11,53;UBERON:0002616,2.06e-11,53;UBERON:0002780,5.68e-11,41;UBERON:0001890,5.68e-11,41;UBERON:0003080,5.68e-11,41;UBERON:0006240,5.68e-11,41;UBERON:0000033,2.76e-09,56;UBERON:0001444,3.02e-09,49;UBERON:0007023,3.16e-09,114;UBERON:0002097,5.87e-09,41;UBERON:0000153,7.68e-09,62;UBERON:0007811,7.68e-09,62;UBERON:0002199,1.41e-08,46;UBERON:0002416,1.41e-08,46;UBERON:0000165,1.72e-08,29;UBERON:0000930,1.72e-08,29;UBERON:0003528,5.64e-08,34;UBERON:0002020,5.64e-08,34;UBERON:0001893,6.71e-08,34;UBERON:0000161,1.04e-07,36;UBERON:0002791,2.14e-07,32;UBERON:0001869,4.42e-07,32 | |||
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| ||
|short_description=p1@PTPN13 | |||
}} | }} |
Latest revision as of 04:14, 19 September 2015
Short description: | p1@PTPN13 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PTPN13_5end |
Coexpression cluster: | C2797_medulloblastoma_neuroectodermal_peripheral_pineal_carcinoid_neuroepithelioma_small |
Association with transcript: | 0bp_to_ENST00000427191, ENST00000436978, ENST00000502971, NM_006264, NM_080683, NM_080684, NM_080685, uc003hpy.2, uc003hpz.2, uc003hqa.2, uc003hqb.2_5end |
EntrezGene: | PTPN13 |
HGNC: | 9646 |
UniProt: | Q12923D6R9M4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
skin fibroblast | 6.15e-09 | 23 |
fibroblast | 2.35e-08 | 76 |