FFCP PHASE1:Hg19::chr19:49658641..49658676,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr19:49658641..49658676,- to FFCP PHASE1:Hg19::chr19:49658641..49658676,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3270 | |EntrezGene=3270 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5178 | |HGNC=5178 | ||
|TSSclassifier=strong | |||
|UniProt=P23327 | |UniProt=P23327 | ||
|association_with_transcript=4bp_to_ENST00000252825,NM_002152,uc002pmv.2_5end | |||
|cluster_id=chr19:49658641..49658676,- | |||
|coexpression_cluster_id=C20 | |||
|description=CAGE_peak_1_at_HRC_5end | |||
|id=chr19:49658641..49658676,- | |||
|ontology_enrichment_celltype=CL:0000188!8.53e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0002322;8.40e-08;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,8.15e-08,5 | |||
|ontology_enrichment_development_v019=UBERON:0003104;8.00e-13;31!UBERON:0006601;2.29e-08;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!5.08e-57!115;UBERON:0001049!2.45e-21!57;UBERON:0005068!2.45e-21!57;UBERON:0006241!2.45e-21!57;UBERON:0007135!2.45e-21!57;UBERON:0001017!2.08e-19!82;UBERON:0002616!2.21e-19!59;UBERON:0005743!7.24e-19!86;UBERON:0002780!8.82e-18!41;UBERON:0001890!8.82e-18!41;UBERON:0006240!8.82e-18!41;UBERON:0000073!2.86e-17!94;UBERON:0001016!2.86e-17!94;UBERON:0003080!4.16e-17!42;UBERON:0000955!4.72e-17!69;UBERON:0006238!4.72e-17!69;UBERON:0003075!1.16e-16!86;UBERON:0007284!1.16e-16!86;UBERON:0002346!1.27e-16!90;UBERON:0001893!5.74e-16!34;UBERON:0002020!8.25e-16!34;UBERON:0003528!8.25e-16!34;UBERON:0002791!2.60e-15!33;UBERON:0001869!1.23e-14!32;UBERON:0002619!7.69e-13!22;UBERON:0000481!1.68e-12!347;UBERON:0001950!8.57e-12!20;UBERON:0000153!8.62e-11!129;UBERON:0007811!8.62e-11!129;UBERON:0000956!1.23e-10!25;UBERON:0000203!1.23e-10!25;UBERON:0003056!2.58e-10!61;UBERON:0000483!9.13e-10!309;UBERON:0000033!1.48e-09!123;UBERON:0000922!1.55e-09!612;UBERON:0000119!2.03e-09!312;UBERON:0000924!4.52e-09!173;UBERON:0006601!4.52e-09!173;UBERON:0004121!6.68e-09!169;UBERON:0000468!7.50e-09!659;UBERON:0000025!3.63e-08!194;UBERON:0000475!4.51e-08!365;UBERON:0004111!6.14e-08!241;UBERON:0000477!1.04e-07!286;UBERON:0002050!5.54e-07!605;UBERON:0005423!5.54e-07!605;UBERON:0002308!7.20e-07!9;UBERON:0000125!7.20e-07!9;UBERON:0002420!7.78e-07!9;UBERON:0007245!7.78e-07!9;UBERON:0010009!7.78e-07!9;UBERON:0010011!7.78e-07!9;UBERON:0000454!7.78e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0007023;2.47e-14;114!UBERON:0001134;1.01e-12;16!UBERON:0002036;1.01e-12;16!UBERON:0000922;5.64e-09;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.85e-51,114;UBERON:0001049,2.22e-10,56;UBERON:0005068,2.22e-10,56;UBERON:0006241,2.22e-10,56;UBERON:0007135,2.22e-10,56;UBERON:0011216,1.14e-09,223;UBERON:0003075,4.46e-09,82;UBERON:0007284,4.46e-09,82;UBERON:0000073,2.25e-08,53;UBERON:0002616,2.25e-08,53;UBERON:0002346,2.65e-08,86;UBERON:0010314,7.52e-08,132;UBERON:0001017,1.03e-07,81;UBERON:0002780,3.62e-07,41;UBERON:0001890,3.62e-07,41;UBERON:0003080,3.62e-07,41;UBERON:0006240,3.62e-07,41;UBERON:0001016,5.79e-07,89 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.23779651843358,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.83370705696798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286836620748814,0,0,0,0,0,0,0,0.151357427644931,0,0,0,0.570471821544449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.17131635936948,1.85541675650079,3.02104251460748,4.14644220061482,2.01856680700503,1.45990943630332,0,0,0,0,0,0,0,0,0,0,0,0.134831308160164,0,0,0,0,0,0,1.26755034821831,0,1.18157981336281,0,1.22988438543114,0,0,0,0,0,0,0,0,0.231860809950154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0.355391948742546,0,0,0,0,0,0,0,0,0,0,2.75084482668401,0.205476322550383,1.07436577943937,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.271265023699736,0,0,0,0,0,0,0,0,0,0,0.195801157462741,36.0300595001399,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.846016147141356,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.501689773854853,0,0,0,0,0,0,0,0,4.12164046590889,0.183138929636687,0,0,0,0,4.15684088656124,0.770243085573222,2.76306614507033,1.65403886981437,0.322260734604821,2.75531718437034,3.92042486114064,67.4862830202269,0,0,0,0,0,0.31481234683064,0,0,0,0,0,0,0.372158369359667,0.316379424718726,0,0,0,0,0,0.359744915166629,0,0,0.202182481573316,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202910376962704,0,0,0.143411352204052,0,0.7133421029625,0.709522128141196,0,0,0,0,0,0,0,3.76575203107117,0,0,0,0,0,0,0,0,0,0,0,0,3.31154620495167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201799707191048,0,0,0.614481528616916,0.894704431569664,0.834245708559542,0,0,3.69262196843137,0,0,0,0,9.669539831945,0.606802608747567,0,0,0,0,0,0.994147647766298,0.844016498463076,0,0,0,8.36841550654493,0.828851746593443,0,0,0,0,0,0,0,1.97286811273867,0,0,0,1.48428957058962,1.99613798001194,0,0,0,0,0,0,0,0,0,1.77148277162768,0.241192877250816,0,0.110579259931225,0.295547618953547,0.87754158861589,0,0,6.92552326534174,0,0.23056390438806,0.179515288819544,0,0,0,0,0,0,0,14.8893136007339,14.5086275395127,15.7752291757292,5.88236571444974,0,0,0,0,2.59666367690509,0,1.23840590304675,3.66618086960175,0,0,0,1.34802265961354,129.215001215105,0,0,0,0,1.18375320854817,4.83962864194656,0.30607276163049,2.0851571277401,0,0,0.664653872707185,0,0,0,0,0.138674673013139,0,0,0,17.8221201606871,0,0.0967563312890851,0,0,5.62536295632833,0.176512253383001,14.6887481507346,0,0,1.58276989889697,0,0,2.13452994739353,0,0,0,9.09453488668412,0,0,0,0,0,0,0,0.600420288709789,0.410716136675979,0,0,0,206.668976941468,551.818301020134,117.731176030597,323.479980808366,998.8090140138,700.75837636748,358.625376134145,0,4.65983798109815,2.59984501613838,2.22522817629149,2.6961417541674,0,0,0.795229689809303,0.681017030557878,0.803765742325096,0.275078873194468,1.24632101408756,0,0,1.88323625639876,0,1.65491985328316,15.6314672642294,0,0,0,435.964149087754,664.740338246893,0,0,0,0,0,0,0,0,1.31897010310274,5.30027555648885,1.29282956361551,0.66116300871345,0,0,1.28144895081234,8.96064539068096,1.24271716604159,1.48849806543585,0,0,0,1.08803560673895,0.7520696820681,0.612691153526923,1.96723578425883,0.157054096250234,1.77213635993397,0.854183854313742,0.751145584238999,1.72022758707021,1.22021956690538,2.42175971471395,0.138348634936231,0,0,0,0,0,0,0,0,0,0.189403005275089,0.251567901752575,0.889811221596536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.314531883711793,0,0,0,0.123935764259002,0,0,0,0,0,0,1.86264752779733,0,1.59633859057151,1.23069818544453,0.504143392443436,2.48966108871184,1.29180516505481,4.28308260777463,0,0,0,0,0,0,0.994581110581374,2.85799247727178,0,0,0,0,0,1.2832141077495,0,1.03343398250592,1.39514782426595,0.546974809018219,4.93431990171464,53.0945960876545,0.175871244359621,0,2.14280734351315,1.68141861109412,1.21393120847326,0.91064876540519,0.177404740325278,0,0,1.01954599465248,1.24968269769413,0,0,5.96547505663907,0.942693539496011,0,1.82631744101899,0,0,5.50369390160254,0,0,18.602835136376,0,0,0,0,1.29068207646083,0,0,1.27016115057279,0,0,0,0,0,0,266.740680921413,232.941908756824,117.141257565158,58.2853191670967,0,0.795803100645473,0,0,0.879524133963433,0,1.00326405540328,1.74847648403166,0,0.735444965261716,0,1.17785080268967,1.48523200163543,5.0718687310008,0,0.0939839179798536,1.93373663920732,0,0,0,0,0.730336388246517,5.96348068425903,1.29005624836306,0.157771562193185,1.69978725477287,0.436350690340377,3.7031878836078,0,0,0,1.89249637252618,0,1.90047751517155,0,0,0,0,4.24360710022141,1.07185652062471,0,0.827463966895162,73.7789577377394,39.5186956229809,0.0645889098360061,0.682821857254437,0,6.74659877748548,13.7439688491589,100.149704032602,209.789013565277,7.34137377859004,4.01644350198988,56.2196002562763,0,0.106727345877715,0,0,17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| ||
|short_description=p1@HRC | |||
}} | }} |
Latest revision as of 06:27, 19 September 2015
Short description: | p1@HRC |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HRC_5end |
Coexpression cluster: | C20_heart_left_skeletal_diaphragm_tongue_umbilical_throat |
Association with transcript: | 4bp_to_ENST00000252825, NM_002152, uc002pmv.2_5end |
EntrezGene: | HRC |
HGNC: | 5178 |
UniProt: | P23327 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 8.15e-08 | 5 |
Ontology term | p-value | n |
---|---|---|
adult organism | 2.85e-51 | 114 |
neural tube | 2.22e-10 | 56 |
neural rod | 2.22e-10 | 56 |
future spinal cord | 2.22e-10 | 56 |
neural keel | 2.22e-10 | 56 |
organ system subdivision | 1.14e-09 | 223 |
neural plate | 4.46e-09 | 82 |
presumptive neural plate | 4.46e-09 | 82 |
regional part of nervous system | 2.25e-08 | 53 |
regional part of brain | 2.25e-08 | 53 |
neurectoderm | 2.65e-08 | 86 |
structure with developmental contribution from neural crest | 7.52e-08 | 132 |
central nervous system | 1.03e-07 | 81 |
regional part of forebrain | 3.62e-07 | 41 |
forebrain | 3.62e-07 | 41 |
anterior neural tube | 3.62e-07 | 41 |
future forebrain | 3.62e-07 | 41 |
nervous system | 5.79e-07 | 89 |