FFCP PHASE1:Hg19::chrX:123094389..123094407,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10735 | |EntrezGene=10735 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11355 | |HGNC=11355 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-2bp_to_ENST00000483575_5end | |association_with_transcript=-2bp_to_ENST00000483575_5end | ||
|cluster_id=chrX:123094389..123094407,+ | |||
|description=CAGE_peak_4_at_STAG2_5end | |description=CAGE_peak_4_at_STAG2_5end | ||
|id=chrX:123094389..123094407,+ | |id=chrX:123094389..123094407,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!2.11e-20!143;DOID:162!2.59e-18!235;DOID:305!2.59e-18!106;DOID:14566!1.45e-17!239 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,2.00e-20,143;DOID:305,2.65e-18,106;DOID:162,3.35e-18,235;DOID:14566,1.63e-17,239 | |||
|ontology_enrichment_uberon=UBERON:0007023!4.18e-23!115;UBERON:0000073!1.29e-14!94;UBERON:0001016!1.29e-14!94;UBERON:0001049!8.88e-14!57;UBERON:0005068!8.88e-14!57;UBERON:0006241!8.88e-14!57;UBERON:0007135!8.88e-14!57;UBERON:0001017!1.24e-13!82;UBERON:0005743!2.23e-13!86;UBERON:0003080!1.57e-11!42;UBERON:0000955!2.03e-11!69;UBERON:0006238!2.03e-11!69;UBERON:0002780!5.15e-11!41;UBERON:0001890!5.15e-11!41;UBERON:0006240!5.15e-11!41;UBERON:0003075!9.24e-10!86;UBERON:0007284!9.24e-10!86;UBERON:0002020!1.01e-09!34;UBERON:0003528!1.01e-09!34;UBERON:0002346!1.14e-09!90;UBERON:0002616!1.66e-09!59;UBERON:0000924!5.33e-09!173;UBERON:0006601!5.33e-09!173;UBERON:0004121!5.81e-09!169;UBERON:0002791!1.06e-08!33;UBERON:0001893!2.67e-08!34;UBERON:0001869!4.66e-08!32;UBERON:0003056!2.40e-07!61;UBERON:0000153!2.75e-07!129;UBERON:0007811!2.75e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0000922;2.35e-08;49!UBERON:0003528;2.51e-08;34!UBERON:0002020;2.51e-08;34!UBERON:0002780;3.20e-08;41!UBERON:0001890;3.20e-08;41!UBERON:0002791;5.00e-08;32!UBERON:0001869;1.85e-07;32!UBERON:0000073;2.03e-07;53!UBERON:0002616;2.03e-07;53!UBERON:0001893;3.91e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.01e-22,114;UBERON:0011216,2.57e-14,223;UBERON:0001016,2.73e-14,89;UBERON:0001049,2.37e-13,56;UBERON:0005068,2.37e-13,56;UBERON:0006241,2.37e-13,56;UBERON:0007135,2.37e-13,56;UBERON:0001017,4.68e-13,81;UBERON:0000073,4.84e-12,53;UBERON:0002616,4.84e-12,53;UBERON:0002780,4.50e-11,41;UBERON:0001890,4.50e-11,41;UBERON:0003080,4.50e-11,41;UBERON:0006240,4.50e-11,41;UBERON:0000955,7.61e-11,68;UBERON:0006238,7.61e-11,68;UBERON:0003528,9.01e-10,34;UBERON:0002020,9.01e-10,34;UBERON:0003075,3.63e-09,82;UBERON:0007284,3.63e-09,82;UBERON:0002346,4.46e-09,86;UBERON:0002791,7.65e-09,32;UBERON:0001893,2.43e-08,34;UBERON:0001869,4.24e-08,32;UBERON:0004121,1.05e-07,171;UBERON:0000924,1.05e-07,171;UBERON:0006601,1.05e-07,171;UBERON:0003056,2.48e-07,61 | |||
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| ||
|short_description=p4@STAG2 | |short_description=p4@STAG2 | ||
}} | }} |
Latest revision as of 07:47, 19 September 2015
Short description: | p4@STAG2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_STAG2_5end |
Coexpression cluster: | NA |
Association with transcript: | -2bp_to_ENST00000483575_5end |
EntrezGene: | STAG2 |
HGNC: | 11355 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 1.01e-22 | 114 |
organ system subdivision | 2.57e-14 | 223 |
nervous system | 2.73e-14 | 89 |
neural tube | 2.37e-13 | 56 |
neural rod | 2.37e-13 | 56 |
future spinal cord | 2.37e-13 | 56 |
neural keel | 2.37e-13 | 56 |
central nervous system | 4.68e-13 | 81 |
regional part of nervous system | 4.84e-12 | 53 |
regional part of brain | 4.84e-12 | 53 |
regional part of forebrain | 4.50e-11 | 41 |
forebrain | 4.50e-11 | 41 |
anterior neural tube | 4.50e-11 | 41 |
future forebrain | 4.50e-11 | 41 |
brain | 7.61e-11 | 68 |
future brain | 7.61e-11 | 68 |
brain grey matter | 9.01e-10 | 34 |
gray matter | 9.01e-10 | 34 |
neural plate | 3.63e-09 | 82 |
presumptive neural plate | 3.63e-09 | 82 |
neurectoderm | 4.46e-09 | 86 |
regional part of telencephalon | 7.65e-09 | 32 |
telencephalon | 2.43e-08 | 34 |
cerebral hemisphere | 4.24e-08 | 32 |
ectoderm-derived structure | 1.05e-07 | 171 |
ectoderm | 1.05e-07 | 171 |
presumptive ectoderm | 1.05e-07 | 171 |
pre-chordal neural plate | 2.48e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 2.00e-20 | 143 |
carcinoma | 2.65e-18 | 106 |
cancer | 3.35e-18 | 235 |
disease of cellular proliferation | 1.63e-17 | 239 |