FFCP PHASE1:Hg19::chr5:98105080..98105096,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=285704 | |EntrezGene=285704 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26896 | |HGNC=26896 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-43bp_to_ENST00000507054_5end | |association_with_transcript=-43bp_to_ENST00000507054_5end | ||
|cluster_id=chr5:98105080..98105096,+ | |||
|coexpression_cluster_id=C952 | |||
|description=CAGE_peak_9_at_RGMB_5end | |description=CAGE_peak_9_at_RGMB_5end | ||
|id=chr5:98105080..98105096,+ | |id=chr5:98105080..98105096,+ | ||
|ontology_enrichment_celltype=CL:0000055!2.45e-25!180;CL:0000057!3.55e-19!75;CL:0002620!2.49e-15!23;CL:0000222!4.27e-10!119;CL:0000680!4.66e-10!57;CL:0000056!4.66e-10!57;CL:0000355!4.66e-10!57;CL:0000187!8.26e-09!54;CL:0000183!1.60e-08!59;CL:0000393!1.78e-08!60;CL:0000211!1.78e-08!60;CL:0000359!1.78e-07!32;CL:0002321!1.94e-07!248;CL:0000220!3.18e-07!246;CL:0000192!9.52e-07!42;CL:0000514!9.52e-07!42 | |ontology_enrichment_celltype=CL:0000055!2.45e-25!180;CL:0000057!3.55e-19!75;CL:0002620!2.49e-15!23;CL:0000222!4.27e-10!119;CL:0000680!4.66e-10!57;CL:0000056!4.66e-10!57;CL:0000355!4.66e-10!57;CL:0000187!8.26e-09!54;CL:0000183!1.60e-08!59;CL:0000393!1.78e-08!60;CL:0000211!1.78e-08!60;CL:0000359!1.78e-07!32;CL:0002321!1.94e-07!248;CL:0000220!3.18e-07!246;CL:0000192!9.52e-07!42;CL:0000514!9.52e-07!42 | ||
|ontology_enrichment_celltype_v019=CL:0002620;1.78e-24;23!CL:0000359;1.86e-10;32!CL:0000057;5.94e-09;73!CL:0002551;2.02e-08;6!CL:0002556;8.49e-08;6!CL:0002559;1.08e-07;5!CL:0000192;2.84e-07;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0002620,1.66e-24,23;CL:0000057,4.59e-23,76;CL:0000680,3.56e-12,58;CL:0000056,3.56e-12,58;CL:0000355,3.56e-12,58;CL:0000359,4.76e-11,32;CL:0000187,5.84e-11,55;CL:0000723,2.08e-10,433;CL:0000048,2.13e-10,427;CL:0000034,9.64e-10,441;CL:0000222,2.10e-09,121;CL:0000393,3.70e-09,61;CL:0000211,3.70e-09,61;CL:0000192,1.13e-08,43;CL:0000514,1.13e-08,43;CL:0002551,3.32e-08,6;CL:0002556,3.60e-08,6;CL:0002559,9.59e-08,5 | |||
|ontology_enrichment_development_v019=CL:0000355;1.10e-07;58!CL:0000514;2.84e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;4.21e-08;5!DOID:450;4.21e-08;5!DOID:66;4.21e-08;5!DOID:423;4.21e-08;5!DOID:0080000;4.21e-08;5!DOID:11722;4.21e-08;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,2.60e-08,5;DOID:450,2.60e-08,5;DOID:66,2.60e-08,5;DOID:423,2.60e-08,5;DOID:0080000,2.60e-08,5;DOID:11722,2.60e-08,5 | |||
|ontology_enrichment_uberon=UBERON:0002199!8.13e-17!45;UBERON:0002416!8.13e-17!45;UBERON:0002097!2.74e-16!40;UBERON:0000914!7.10e-16!83;UBERON:0002329!7.10e-16!83;UBERON:0003077!7.10e-16!83;UBERON:0003059!7.10e-16!83;UBERON:0007282!7.10e-16!83;UBERON:0009618!7.10e-16!83;UBERON:0007285!7.10e-16!83;UBERON:0004290!1.97e-13!70;UBERON:0000486!2.69e-13!82;UBERON:0001637!9.38e-13!42;UBERON:0003509!9.38e-13!42;UBERON:0004572!9.38e-13!42;UBERON:0003102!1.21e-12!95;UBERON:0001981!3.56e-12!60;UBERON:0007500!3.56e-12!60;UBERON:0004537!3.56e-12!60;UBERON:0006965!3.56e-12!60;UBERON:0000055!6.22e-12!69;UBERON:0000475!1.57e-10!365;UBERON:0002049!1.60e-10!79;UBERON:0007798!1.60e-10!79;UBERON:0004573!3.50e-10!33;UBERON:0004571!3.50e-10!33;UBERON:0002385!1.79e-09!63;UBERON:0001015!1.79e-09!63;UBERON:0000383!1.79e-09!63;UBERON:0001134!4.64e-09!61;UBERON:0002036!4.64e-09!61;UBERON:0003082!4.64e-09!61;UBERON:0000483!9.54e-09!309;UBERON:0000119!1.46e-08!312;UBERON:0004872!6.24e-08!84;UBERON:0002067!2.56e-07!9;UBERON:0004016!2.56e-07!9;UBERON:0010083!2.56e-07!9;UBERON:0000490!9.52e-07!138 | |ontology_enrichment_uberon=UBERON:0002199!8.13e-17!45;UBERON:0002416!8.13e-17!45;UBERON:0002097!2.74e-16!40;UBERON:0000914!7.10e-16!83;UBERON:0002329!7.10e-16!83;UBERON:0003077!7.10e-16!83;UBERON:0003059!7.10e-16!83;UBERON:0007282!7.10e-16!83;UBERON:0009618!7.10e-16!83;UBERON:0007285!7.10e-16!83;UBERON:0004290!1.97e-13!70;UBERON:0000486!2.69e-13!82;UBERON:0001637!9.38e-13!42;UBERON:0003509!9.38e-13!42;UBERON:0004572!9.38e-13!42;UBERON:0003102!1.21e-12!95;UBERON:0001981!3.56e-12!60;UBERON:0007500!3.56e-12!60;UBERON:0004537!3.56e-12!60;UBERON:0006965!3.56e-12!60;UBERON:0000055!6.22e-12!69;UBERON:0000475!1.57e-10!365;UBERON:0002049!1.60e-10!79;UBERON:0007798!1.60e-10!79;UBERON:0004573!3.50e-10!33;UBERON:0004571!3.50e-10!33;UBERON:0002385!1.79e-09!63;UBERON:0001015!1.79e-09!63;UBERON:0000383!1.79e-09!63;UBERON:0001134!4.64e-09!61;UBERON:0002036!4.64e-09!61;UBERON:0003082!4.64e-09!61;UBERON:0000483!9.54e-09!309;UBERON:0000119!1.46e-08!312;UBERON:0004872!6.24e-08!84;UBERON:0002067!2.56e-07!9;UBERON:0004016!2.56e-07!9;UBERON:0010083!2.56e-07!9;UBERON:0000490!9.52e-07!138 | ||
|ontology_enrichment_uberon_v019=UBERON:0002097;6.62e-18;41!UBERON:0002199;3.61e-15;46!UBERON:0002416;3.61e-15;46!UBERON:0003102;4.88e-14;50!UBERON:0002067;9.11e-13;9!UBERON:0004573;8.60e-11;33!UBERON:0004571;8.60e-11;33!UBERON:0001637;6.35e-10;42!UBERON:0003509;6.35e-10;42!UBERON:0004572;6.35e-10;42!UBERON:0001758;8.49e-08;6!UBERON:0003672;8.49e-08;6!UBERON:0002073;1.08e-07;5!UBERON:0007500;2.28e-07;56!UBERON:0001981;2.28e-07;56!UBERON:0004537;2.28e-07;56!UBERON:0002385;9.06e-07;31!UBERON:0001015;9.06e-07;31!UBERON:0000383;9.06e-07;31 | |||
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| ||
|short_description=p9@RGMB | |short_description=p9@RGMB | ||
}} | }} |
Latest revision as of 10:21, 19 September 2015
Short description: | p9@RGMB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_RGMB_5end |
Coexpression cluster: | C952_basal_Fibroblast_tenocyte_Hair_Smooth_Preadipocyte_Myoblast |
Association with transcript: | -43bp_to_ENST00000507054_5end |
EntrezGene: | RGMB |
HGNC: | 26896 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
skin fibroblast | 1.66e-24 | 23 |
fibroblast | 4.59e-23 | 76 |
muscle precursor cell | 3.56e-12 | 58 |
myoblast | 3.56e-12 | 58 |
multi-potent skeletal muscle stem cell | 3.56e-12 | 58 |
vascular associated smooth muscle cell | 4.76e-11 | 32 |
muscle cell | 5.84e-11 | 55 |
somatic stem cell | 2.08e-10 | 433 |
multi fate stem cell | 2.13e-10 | 427 |
stem cell | 9.64e-10 | 441 |
mesodermal cell | 2.10e-09 | 121 |
electrically responsive cell | 3.70e-09 | 61 |
electrically active cell | 3.70e-09 | 61 |
smooth muscle cell | 1.13e-08 | 43 |
smooth muscle myoblast | 1.13e-08 | 43 |
fibroblast of dermis | 3.32e-08 | 6 |
fibroblast of periodontium | 3.60e-08 | 6 |
hair follicle cell | 9.59e-08 | 5 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 2.60e-08 | 5 |
myotonic disease | 2.60e-08 | 5 |
muscle tissue disease | 2.60e-08 | 5 |
myopathy | 2.60e-08 | 5 |
muscular disease | 2.60e-08 | 5 |
myotonic dystrophy | 2.60e-08 | 5 |