FFCP PHASE1:Hg19::chr5:102143830..102143844,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5066 | |EntrezGene=5066 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8596 | |HGNC=8596 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=63bp_to_ENST00000509523_5end | |association_with_transcript=63bp_to_ENST00000509523_5end | ||
|cluster_id=chr5:102143830..102143844,+ | |||
|coexpression_cluster_id=C94 | |||
|description=CAGE_peak_18_at_PAM_5end | |description=CAGE_peak_18_at_PAM_5end | ||
|id=chr5:102143830..102143844,+ | |id=chr5:102143830..102143844,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002553;8.63e-16;1!CL:0000167;1.44e-15;1!CL:0000164;1.44e-15;1!CL:0000502;1.44e-15;1!CL:0000172;1.44e-15;1!CL:0000173;1.44e-15;1!CL:0002535;1.39e-08;2!CL:0002253;2.57e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002553,8.63e-16,1;CL:0000167,1.54e-15,1;CL:0000164,1.54e-15,1;CL:0000502,1.54e-15,1;CL:0000172,1.54e-15,1;CL:0000173,1.54e-15,1;CL:0002351,1.54e-15,1;CL:0002535,1.39e-08,2;CL:0002253,2.48e-08,2 | |||
|ontology_enrichment_development_v019=CL:0002351;1.44e-15;1 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:4430;1.44e-15;1!DOID:3119;8.07e-10;14 | |||
|ontology_enrichment_disease_v019_2=DOID:4430,1.54e-15,1;DOID:3119,7.95e-10,14 | |||
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|ontology_enrichment_uberon_v019=UBERON:0001876;3.67e-29;2!UBERON:0000007;8.06e-29;2!UBERON:0001871;8.04e-19;6!UBERON:0002022;2.56e-15;1!UBERON:0003296;6.04e-15;4!UBERON:0010133;6.04e-15;4!UBERON:0000349;2.74e-12;5!UBERON:0001950;4.68e-11;20!UBERON:0002619;4.06e-10;22!UBERON:0002780;7.55e-10;41!UBERON:0001890;7.55e-10;41!UBERON:0000956;5.58e-09;25!UBERON:0000203;5.58e-09;25!UBERON:0001894;6.06e-09;7!UBERON:0006955;1.39e-08;2!UBERON:0004801;1.39e-08;2!UBERON:0000073;1.17e-07;53!UBERON:0002616;1.17e-07;53!UBERON:0002420;3.19e-07;9!UBERON:0007245;3.19e-07;9!UBERON:0010009;3.19e-07;9!UBERON:0010011;3.19e-07;9!UBERON:0000454;3.19e-07;9!UBERON:0002791;6.65e-07;32!UBERON:0001869;6.65e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001876,4.55e-29,2;UBERON:0000007,4.55e-29,2;UBERON:0001871,8.55e-19,6;UBERON:0002022,2.75e-15,1;UBERON:0003296,4.55e-15,4;UBERON:0010133,4.55e-15,4;UBERON:0000349,2.99e-12,5;UBERON:0002780,7.98e-12,41;UBERON:0001890,7.98e-12,41;UBERON:0003080,7.98e-12,41;UBERON:0006240,7.98e-12,41;UBERON:0001950,4.87e-11,20;UBERON:0002619,4.21e-10,22;UBERON:0000073,3.90e-09,53;UBERON:0002616,3.90e-09,53;UBERON:0001894,5.16e-09,7;UBERON:0006222,5.16e-09,7;UBERON:0000956,5.77e-09,25;UBERON:0000203,5.77e-09,25;UBERON:0001049,1.22e-08,56;UBERON:0005068,1.22e-08,56;UBERON:0006241,1.22e-08,56;UBERON:0007135,1.22e-08,56;UBERON:0006955,1.39e-08,2;UBERON:0004801,1.39e-08,2;UBERON:0003056,6.45e-08,61;UBERON:0002420,3.34e-07,9;UBERON:0007245,3.34e-07,9;UBERON:0010009,3.34e-07,9;UBERON:0010011,3.34e-07,9;UBERON:0000454,3.34e-07,9;UBERON:0002791,4.13e-07,32;UBERON:0001869,4.13e-07,32;UBERON:0000955,5.65e-07,68;UBERON:0006238,5.65e-07,68 | |||
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|short_description=p18@PAM | |short_description=p18@PAM | ||
}} | }} |
Latest revision as of 12:52, 19 September 2015
Short description: | p18@PAM |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_18_at_PAM_5end |
Coexpression cluster: | C94_smallcell_adrenal_lung_nonsmall_small_somatostatinoma_teratocarcinoma |
Association with transcript: | 63bp_to_ENST00000509523_5end |
EntrezGene: | PAM |
HGNC: | 8596 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lung fibroblast | 8.63e-16 | 1 |
peptide hormone secreting cell | 1.54e-15 | 1 |
enteroendocrine cell | 1.54e-15 | 1 |
type D enteroendocrine cell | 1.54e-15 | 1 |
somatostatin secreting cell | 1.54e-15 | 1 |
pancreatic D cell | 1.54e-15 | 1 |
progenitor cell of endocrine pancreas | 1.54e-15 | 1 |
epithelial cell of cervix | 1.39e-08 | 2 |
epithelial cell of large intestine | 2.48e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
amygdala | 4.55e-29 | 2 |
pituitary gland | 4.55e-29 | 2 |
temporal lobe | 8.55e-19 | 6 |
insula | 2.75e-15 | 1 |
gland of diencephalon | 4.55e-15 | 4 |
neuroendocrine gland | 4.55e-15 | 4 |
limbic system | 2.99e-12 | 5 |
regional part of forebrain | 7.98e-12 | 41 |
forebrain | 7.98e-12 | 41 |
anterior neural tube | 7.98e-12 | 41 |
future forebrain | 7.98e-12 | 41 |
neocortex | 4.87e-11 | 20 |
regional part of cerebral cortex | 4.21e-10 | 22 |
regional part of nervous system | 3.90e-09 | 53 |
regional part of brain | 3.90e-09 | 53 |
diencephalon | 5.16e-09 | 7 |
future diencephalon | 5.16e-09 | 7 |
cerebral cortex | 5.77e-09 | 25 |
pallium | 5.77e-09 | 25 |
neural tube | 1.22e-08 | 56 |
neural rod | 1.22e-08 | 56 |
future spinal cord | 1.22e-08 | 56 |
neural keel | 1.22e-08 | 56 |
uterine epithelium | 1.39e-08 | 2 |
cervix epithelium | 1.39e-08 | 2 |
pre-chordal neural plate | 6.45e-08 | 61 |
basal ganglion | 3.34e-07 | 9 |
nuclear complex of neuraxis | 3.34e-07 | 9 |
aggregate regional part of brain | 3.34e-07 | 9 |
collection of basal ganglia | 3.34e-07 | 9 |
cerebral subcortex | 3.34e-07 | 9 |
regional part of telencephalon | 4.13e-07 | 32 |
cerebral hemisphere | 4.13e-07 | 32 |
brain | 5.65e-07 | 68 |
future brain | 5.65e-07 | 68 |
Ontology term | p-value | n |
---|---|---|
somatostatinoma | 1.54e-15 | 1 |
gastrointestinal system cancer | 7.95e-10 | 14 |