FFCP PHASE1:Hg19::chr10:88516341..88516391,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr10:88516341..88516391,+
|short_description=p1@BMPR1A
|description=CAGE_peak_1_at_BMPR1A_5end
|association_with_transcript=-4bp_to_ENST00000224764,NM_004329,u...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=657 | |EntrezGene=657 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1076 | |HGNC=1076 | ||
|TSSclassifier=strong | |||
|UniProt=P36894 | |UniProt=P36894 | ||
|association_with_transcript=-4bp_to_ENST00000224764,NM_004329,uc001kdy.2_5end | |||
|cluster_id=chr10:88516341..88516391,+ | |||
|description=CAGE_peak_1_at_BMPR1A_5end | |||
|id=chr10:88516341..88516391,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!1.40e-08!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,1.61e-08,143 | |||
|ontology_enrichment_uberon=UBERON:0000073!7.36e-17!94;UBERON:0001016!7.36e-17!94;UBERON:0005743!7.94e-17!86;UBERON:0001017!1.06e-16!82;UBERON:0000924!2.71e-16!173;UBERON:0006601!2.71e-16!173;UBERON:0004121!2.24e-15!169;UBERON:0007023!8.11e-14!115;UBERON:0000033!9.37e-14!123;UBERON:0001049!1.63e-13!57;UBERON:0005068!1.63e-13!57;UBERON:0006241!1.63e-13!57;UBERON:0007135!1.63e-13!57;UBERON:0000955!3.95e-13!69;UBERON:0006238!3.95e-13!69;UBERON:0000475!4.25e-13!365;UBERON:0002346!6.34e-13!90;UBERON:0002616!9.15e-13!59;UBERON:0000153!1.04e-12!129;UBERON:0007811!1.04e-12!129;UBERON:0003075!5.23e-12!86;UBERON:0007284!5.23e-12!86;UBERON:0000481!1.24e-11!347;UBERON:0002780!6.82e-11!41;UBERON:0001890!6.82e-11!41;UBERON:0006240!6.82e-11!41;UBERON:0003080!8.67e-11!42;UBERON:0001893!1.40e-09!34;UBERON:0002020!1.79e-09!34;UBERON:0003528!1.79e-09!34;UBERON:0002791!2.93e-09!33;UBERON:0001869!6.14e-09!32;UBERON:0003056!1.66e-08!61;UBERON:0004458!1.43e-07!49;UBERON:0002323!2.45e-07!46;UBERON:0000062!3.87e-07!511;UBERON:0004176!8.73e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;2.09e-08;41!UBERON:0001890;2.09e-08;41!UBERON:0001893;3.55e-08;34!UBERON:0002791;4.55e-08;32!UBERON:0003528;4.90e-08;34!UBERON:0002020;4.90e-08;34!UBERON:0000922;5.30e-08;49!UBERON:0001869;6.28e-08;32!UBERON:0000073;7.86e-08;53!UBERON:0002616;7.86e-08;53!UBERON:0001017;4.42e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,8.43e-17,81;UBERON:0001016,8.72e-17,89;UBERON:0011216,2.42e-16,223;UBERON:0004121,2.99e-15,171;UBERON:0000924,2.99e-15,171;UBERON:0006601,2.99e-15,171;UBERON:0001049,1.25e-13,56;UBERON:0005068,1.25e-13,56;UBERON:0006241,1.25e-13,56;UBERON:0007135,1.25e-13,56;UBERON:0007023,1.83e-13,114;UBERON:0000955,3.26e-13,68;UBERON:0006238,3.26e-13,68;UBERON:0000073,2.46e-12,53;UBERON:0002616,2.46e-12,53;UBERON:0002346,2.33e-11,86;UBERON:0002780,6.54e-11,41;UBERON:0001890,6.54e-11,41;UBERON:0003080,6.54e-11,41;UBERON:0006240,6.54e-11,41;UBERON:0003075,1.80e-10,82;UBERON:0007284,1.80e-10,82;UBERON:0001893,1.35e-09,34;UBERON:0003528,1.73e-09,34;UBERON:0002020,1.73e-09,34;UBERON:0010314,2.61e-09,132;UBERON:0001869,5.94e-09,32;UBERON:0002791,7.92e-09,32;UBERON:0003056,2.66e-08,61;UBERON:0004458,1.39e-07,49;UBERON:0002323,2.38e-07,46;UBERON:0010371,2.54e-07,104;UBERON:0004176,8.52e-07,22 | |||
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| ||
|short_description=p1@BMPR1A | |||
}} | }} |
Latest revision as of 18:03, 19 September 2015
Short description: | p1@BMPR1A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_BMPR1A_5end |
Coexpression cluster: | NA |
Association with transcript: | -4bp_to_ENST00000224764, NM_004329, uc001kdy.2_5end |
EntrezGene: | BMPR1A |
HGNC: | 1076 |
UniProt: | P36894 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
central nervous system | 8.43e-17 | 81 |
nervous system | 8.72e-17 | 89 |
organ system subdivision | 2.42e-16 | 223 |
ectoderm-derived structure | 2.99e-15 | 171 |
ectoderm | 2.99e-15 | 171 |
presumptive ectoderm | 2.99e-15 | 171 |
neural tube | 1.25e-13 | 56 |
neural rod | 1.25e-13 | 56 |
future spinal cord | 1.25e-13 | 56 |
neural keel | 1.25e-13 | 56 |
adult organism | 1.83e-13 | 114 |
brain | 3.26e-13 | 68 |
future brain | 3.26e-13 | 68 |
regional part of nervous system | 2.46e-12 | 53 |
regional part of brain | 2.46e-12 | 53 |
neurectoderm | 2.33e-11 | 86 |
regional part of forebrain | 6.54e-11 | 41 |
forebrain | 6.54e-11 | 41 |
anterior neural tube | 6.54e-11 | 41 |
future forebrain | 6.54e-11 | 41 |
neural plate | 1.80e-10 | 82 |
presumptive neural plate | 1.80e-10 | 82 |
telencephalon | 1.35e-09 | 34 |
brain grey matter | 1.73e-09 | 34 |
gray matter | 1.73e-09 | 34 |
structure with developmental contribution from neural crest | 2.61e-09 | 132 |
cerebral hemisphere | 5.94e-09 | 32 |
regional part of telencephalon | 7.92e-09 | 32 |
pre-chordal neural plate | 2.66e-08 | 61 |
body cavity or lining | 1.39e-07 | 49 |
body cavity | 2.38e-07 | 46 |
ecto-epithelium | 2.54e-07 | 104 |
external genitalia | 8.52e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 1.61e-08 | 143 |