FFCP PHASE1:Hg19::chr7:100199967..100200012,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr7:100199967..100200012,+ to FFCP PHASE1:Hg19::chr7:100199967..100200012,+: NSchange) |
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(12 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5118 | |EntrezGene=5118 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8738 | |HGNC=8738 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-13bp_to_ENST00000496269_5end | |||
|cluster_id=chr7:100199967..100200012,+ | |||
|coexpression_cluster_id=C1641 | |||
|description=CAGE_peak_1_at_PCOLCE_5end | |||
|id=chr7:100199967..100200012,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.65e-50!180;CL:0000057!2.29e-27!75;CL:0000680!1.36e-18!57;CL:0000056!1.36e-18!57;CL:0000355!1.36e-18!57;CL:0000183!2.31e-18!59;CL:0000187!4.54e-18!54;CL:0000393!4.41e-17!60;CL:0000211!4.41e-17!60;CL:0000192!2.98e-13!42;CL:0000514!2.98e-13!42;CL:0002620!5.04e-12!23;CL:0000359!5.50e-09!32;CL:0000499!2.81e-08!27;CL:0000327!5.31e-07!14 | |||
|ontology_enrichment_celltype_v019=CL:0002620;2.19e-12;23!CL:0000057;2.77e-11;73!CL:0000187;4.74e-11;55!CL:0000192;2.81e-10;43!CL:0000393;5.27e-10;61!CL:0000211;5.27e-10;61!CL:0002320;6.66e-09;188!CL:0000359;8.13e-09;32!CL:0000499;3.50e-08;28!CL:0000134;5.82e-08;55!CL:0000723;1.04e-07;61!CL:0000048;4.06e-07;58!CL:0000327;5.63e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,3.19e-28,76;CL:0000680,9.14e-20,58;CL:0000056,9.14e-20,58;CL:0000355,9.14e-20,58;CL:0000187,3.19e-19,55;CL:0000393,3.51e-18,61;CL:0000211,3.51e-18,61;CL:0000192,3.24e-14,43;CL:0000514,3.24e-14,43;CL:0002620,2.18e-12,23;CL:0000048,1.44e-09,427;CL:0000359,3.03e-09,32;CL:0000723,1.73e-08,433;CL:0000034,2.93e-08,441;CL:0000499,3.44e-08,28;CL:0000327,5.70e-07,15 | |||
|ontology_enrichment_development_v019=CL:0000355;6.45e-11;58!CL:0000514;2.81e-10;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!3.68e-25!83;UBERON:0002329!3.68e-25!83;UBERON:0003077!3.68e-25!83;UBERON:0003059!3.68e-25!83;UBERON:0007282!3.68e-25!83;UBERON:0009618!3.68e-25!83;UBERON:0007285!3.68e-25!83;UBERON:0004290!4.36e-22!70;UBERON:0001134!2.22e-19!61;UBERON:0002036!2.22e-19!61;UBERON:0003082!2.22e-19!61;UBERON:0002385!2.32e-19!63;UBERON:0001015!2.32e-19!63;UBERON:0000383!2.32e-19!63;UBERON:0000486!2.00e-17!82;UBERON:0005256!2.30e-17!143;UBERON:0000475!2.94e-17!365;UBERON:0000481!1.56e-12!347;UBERON:0000468!3.79e-12!659;UBERON:0003102!2.60e-10!95;UBERON:0002199!3.87e-10!45;UBERON:0002416!3.87e-10!45;UBERON:0002100!5.26e-10!216;UBERON:0003104!1.83e-08!238;UBERON:0009142!1.83e-08!238;UBERON:0002097!2.32e-08!40;UBERON:0000479!3.37e-08!787;UBERON:0000119!3.38e-08!312;UBERON:0000490!4.62e-08!138;UBERON:0000467!1.03e-07!625;UBERON:0000483!1.28e-07!309;UBERON:0000480!1.57e-07!626;UBERON:0004872!4.14e-07!84;UBERON:0000948!4.69e-07!24;UBERON:0005498!4.69e-07!24;UBERON:0004140!4.69e-07!24;UBERON:0009881!4.69e-07!24;UBERON:0004141!4.69e-07!24;UBERON:0003084!4.69e-07!24;UBERON:0007005!4.69e-07!24;UBERON:0004139!4.69e-07!24;UBERON:0004291!4.69e-07!24;UBERON:0001013!5.43e-07!14;UBERON:0007100!5.93e-07!27 | |||
|ontology_enrichment_uberon_v019=UBERON:0002385;5.10e-10;31!UBERON:0001015;5.10e-10;31!UBERON:0000383;5.10e-10;31!UBERON:0002204;1.22e-09;70!UBERON:0002384;1.69e-09;198!UBERON:0002199;2.74e-07;46!UBERON:0002416;2.74e-07;46!UBERON:0002097;2.99e-07;41!UBERON:0001013;3.49e-07;14!UBERON:0001434;5.19e-07;36 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,7.84e-24,73;UBERON:0002329,2.17e-23,71;UBERON:0003059,2.17e-23,71;UBERON:0007282,2.17e-23,71;UBERON:0004290,2.17e-23,71;UBERON:0009618,2.17e-23,71;UBERON:0003077,3.67e-23,72;UBERON:0007285,3.67e-23,72;UBERON:0001134,1.41e-20,62;UBERON:0002036,1.41e-20,62;UBERON:0003082,1.41e-20,62;UBERON:0002385,1.48e-20,64;UBERON:0001015,1.48e-20,64;UBERON:0000383,1.48e-20,64;UBERON:0007503,3.82e-20,78;UBERON:0000486,2.72e-18,83;UBERON:0003104,6.42e-18,160;UBERON:0009142,6.42e-18,160;UBERON:0005256,1.63e-16,122;UBERON:0002199,2.44e-11,46;UBERON:0002416,2.44e-11,46;UBERON:0000479,3.54e-11,773;UBERON:0003102,1.53e-10,99;UBERON:0000490,3.95e-10,148;UBERON:0002097,1.84e-09,41;UBERON:0000119,1.10e-07,309;UBERON:0002100,2.59e-07,199;UBERON:0004872,2.67e-07,83;UBERON:0000948,3.01e-07,24;UBERON:0005498,3.01e-07,24;UBERON:0004140,3.01e-07,24;UBERON:0009881,3.01e-07,24;UBERON:0004141,3.01e-07,24;UBERON:0003084,3.01e-07,24;UBERON:0007005,3.01e-07,24;UBERON:0004139,3.01e-07,24;UBERON:0004291,3.01e-07,24;UBERON:0001013,3.50e-07,14;UBERON:0007100,3.84e-07,27;UBERON:0000483,4.08e-07,306 | |||
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| ||
|short_description=p1@PCOLCE | |||
}} | }} |
Latest revision as of 07:38, 20 September 2015
Short description: | p1@PCOLCE |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PCOLCE_5end |
Coexpression cluster: | C1641_Mesenchymal_Nucleus_Fibroblast_tenocyte_Pericytes_normal_Smooth |
Association with transcript: | -13bp_to_ENST00000496269_5end |
EntrezGene: | PCOLCE |
HGNC: | 8738 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 3.19e-28 | 76 |
muscle precursor cell | 9.14e-20 | 58 |
myoblast | 9.14e-20 | 58 |
multi-potent skeletal muscle stem cell | 9.14e-20 | 58 |
muscle cell | 3.19e-19 | 55 |
electrically responsive cell | 3.51e-18 | 61 |
electrically active cell | 3.51e-18 | 61 |
smooth muscle cell | 3.24e-14 | 43 |
smooth muscle myoblast | 3.24e-14 | 43 |
skin fibroblast | 2.18e-12 | 23 |
multi fate stem cell | 1.44e-09 | 427 |
vascular associated smooth muscle cell | 3.03e-09 | 32 |
somatic stem cell | 1.73e-08 | 433 |
stem cell | 2.93e-08 | 441 |
stromal cell | 3.44e-08 | 28 |
extracellular matrix secreting cell | 5.70e-07 | 15 |