FFCP PHASE1:Hg19::chr7:99613212..99613236,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7586 | |EntrezGene=7586 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13101 | |HGNC=13101 | ||
|TSSclassifier=strong | |||
|UniProt=E9PC66,B3KRF7,P17029,Q96FA2 | |UniProt=E9PC66,B3KRF7,P17029,Q96FA2 | ||
|association_with_transcript=0bp_to_ENST00000426572,ENST00000482979,ENST00000535170,NM_003439,uc003usj.2,uc003usk.1,uc003usl.1,uc003usm.1_5end | |association_with_transcript=0bp_to_ENST00000426572,ENST00000482979,ENST00000535170,NM_003439,uc003usj.2,uc003usk.1,uc003usl.1,uc003usm.1_5end | ||
|cluster_id=chr7:99613212..99613236,+ | |||
|description=CAGE_peak_1_at_ZKSCAN1_5end | |description=CAGE_peak_1_at_ZKSCAN1_5end | ||
|id=chr7:99613212..99613236,+ | |id=chr7:99613212..99613236,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006601;9.44e-09;82 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!4.45e-22!57;UBERON:0005068!4.45e-22!57;UBERON:0006241!4.45e-22!57;UBERON:0007135!4.45e-22!57;UBERON:0007023!5.36e-21!115;UBERON:0002780!4.54e-20!41;UBERON:0001890!4.54e-20!41;UBERON:0006240!4.54e-20!41;UBERON:0003080!1.13e-19!42;UBERON:0002616!1.18e-18!59;UBERON:0000955!8.64e-18!69;UBERON:0006238!8.64e-18!69;UBERON:0001017!1.12e-17!82;UBERON:0000073!1.19e-16!94;UBERON:0001016!1.19e-16!94;UBERON:0001893!2.35e-16!34;UBERON:0005743!2.71e-16!86;UBERON:0002020!3.17e-16!34;UBERON:0003528!3.17e-16!34;UBERON:0002791!7.07e-16!33;UBERON:0001869!4.10e-15!32;UBERON:0002346!5.00e-14!90;UBERON:0000153!5.46e-14!129;UBERON:0007811!5.46e-14!129;UBERON:0003075!6.70e-14!86;UBERON:0007284!6.70e-14!86;UBERON:0002619!1.38e-12!22;UBERON:0000924!2.80e-12!173;UBERON:0006601!2.80e-12!173;UBERON:0000033!2.92e-12!123;UBERON:0004121!4.96e-12!169;UBERON:0003056!8.44e-12!61;UBERON:0001950!1.20e-11!20;UBERON:0000956!2.07e-11!25;UBERON:0000203!2.07e-11!25 | |ontology_enrichment_uberon=UBERON:0001049!4.45e-22!57;UBERON:0005068!4.45e-22!57;UBERON:0006241!4.45e-22!57;UBERON:0007135!4.45e-22!57;UBERON:0007023!5.36e-21!115;UBERON:0002780!4.54e-20!41;UBERON:0001890!4.54e-20!41;UBERON:0006240!4.54e-20!41;UBERON:0003080!1.13e-19!42;UBERON:0002616!1.18e-18!59;UBERON:0000955!8.64e-18!69;UBERON:0006238!8.64e-18!69;UBERON:0001017!1.12e-17!82;UBERON:0000073!1.19e-16!94;UBERON:0001016!1.19e-16!94;UBERON:0001893!2.35e-16!34;UBERON:0005743!2.71e-16!86;UBERON:0002020!3.17e-16!34;UBERON:0003528!3.17e-16!34;UBERON:0002791!7.07e-16!33;UBERON:0001869!4.10e-15!32;UBERON:0002346!5.00e-14!90;UBERON:0000153!5.46e-14!129;UBERON:0007811!5.46e-14!129;UBERON:0003075!6.70e-14!86;UBERON:0007284!6.70e-14!86;UBERON:0002619!1.38e-12!22;UBERON:0000924!2.80e-12!173;UBERON:0006601!2.80e-12!173;UBERON:0000033!2.92e-12!123;UBERON:0004121!4.96e-12!169;UBERON:0003056!8.44e-12!61;UBERON:0001950!1.20e-11!20;UBERON:0000956!2.07e-11!25;UBERON:0000203!2.07e-11!25 | ||
|ontology_enrichment_uberon_v019=UBERON:0002780;9.43e-15;41!UBERON:0001890;9.43e-15;41!UBERON:0001893;5.32e-14;34!UBERON:0003528;5.86e-14;34!UBERON:0002020;5.86e-14;34!UBERON:0002791;6.80e-14;32!UBERON:0001869;8.42e-14;32!UBERON:0002619;1.38e-12;22!UBERON:0000073;2.04e-12;53!UBERON:0002616;2.04e-12;53!UBERON:0001950;1.23e-11;20!UBERON:0000956;1.87e-11;25!UBERON:0000203;1.87e-11;25!UBERON:0000955;4.52e-09;68!UBERON:0001017;5.37e-09;75!UBERON:0001016;1.91e-08;83!UBERON:0007023;1.50e-07;114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,2.12e-22,56;UBERON:0005068,2.12e-22,56;UBERON:0006241,2.12e-22,56;UBERON:0007135,2.12e-22,56;UBERON:0000073,8.30e-21,53;UBERON:0002616,8.30e-21,53;UBERON:0007023,1.32e-20,114;UBERON:0002780,4.54e-20,41;UBERON:0001890,4.54e-20,41;UBERON:0003080,4.54e-20,41;UBERON:0006240,4.54e-20,41;UBERON:0001016,4.23e-18,89;UBERON:0000955,5.42e-18,68;UBERON:0006238,5.42e-18,68;UBERON:0001017,7.66e-18,81;UBERON:0001893,2.35e-16,34;UBERON:0003528,3.17e-16,34;UBERON:0002020,3.17e-16,34;UBERON:0002791,3.15e-15,32;UBERON:0001869,4.10e-15,32;UBERON:0002346,1.37e-14,86;UBERON:0003075,1.74e-14,82;UBERON:0007284,1.74e-14,82;UBERON:0011216,7.49e-13,223;UBERON:0002619,1.38e-12,22;UBERON:0003056,1.75e-12,61;UBERON:0004121,2.23e-12,171;UBERON:0000924,2.23e-12,171;UBERON:0006601,2.23e-12,171;UBERON:0010371,7.17e-12,104;UBERON:0001950,1.20e-11,20;UBERON:0000956,2.07e-11,25;UBERON:0000203,2.07e-11,25 | |||
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| ||
|short_description=p1@ZKSCAN1 | |short_description=p1@ZKSCAN1 | ||
}} | }} |
Latest revision as of 16:52, 24 September 2015
Short description: | p1@ZKSCAN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ZKSCAN1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000426572, ENST00000482979, ENST00000535170, NM_003439, uc003usj.2, uc003usk.1, uc003usl.1, uc003usm.1_5end |
EntrezGene: | ZKSCAN1 |
HGNC: | 13101 |
UniProt: | E9PC66B3KRF7P17029Q96FA2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural tube | 2.12e-22 | 56 |
neural rod | 2.12e-22 | 56 |
future spinal cord | 2.12e-22 | 56 |
neural keel | 2.12e-22 | 56 |
regional part of nervous system | 8.30e-21 | 53 |
regional part of brain | 8.30e-21 | 53 |
adult organism | 1.32e-20 | 114 |
regional part of forebrain | 4.54e-20 | 41 |
forebrain | 4.54e-20 | 41 |
anterior neural tube | 4.54e-20 | 41 |
future forebrain | 4.54e-20 | 41 |
nervous system | 4.23e-18 | 89 |
brain | 5.42e-18 | 68 |
future brain | 5.42e-18 | 68 |
central nervous system | 7.66e-18 | 81 |
telencephalon | 2.35e-16 | 34 |
brain grey matter | 3.17e-16 | 34 |
gray matter | 3.17e-16 | 34 |
regional part of telencephalon | 3.15e-15 | 32 |
cerebral hemisphere | 4.10e-15 | 32 |
neurectoderm | 1.37e-14 | 86 |
neural plate | 1.74e-14 | 82 |
presumptive neural plate | 1.74e-14 | 82 |
organ system subdivision | 7.49e-13 | 223 |
regional part of cerebral cortex | 1.38e-12 | 22 |
pre-chordal neural plate | 1.75e-12 | 61 |
ectoderm-derived structure | 2.23e-12 | 171 |
ectoderm | 2.23e-12 | 171 |
presumptive ectoderm | 2.23e-12 | 171 |
ecto-epithelium | 7.17e-12 | 104 |
neocortex | 1.20e-11 | 20 |
cerebral cortex | 2.07e-11 | 25 |
pallium | 2.07e-11 | 25 |