FFCP PHASE1:Hg19::chr4:119757322..119757334,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr4:119757322..119757334,- to FFCP PHASE1:Hg19::chr4:119757322..119757334,-: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9871 | |EntrezGene=9871 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10706 | |HGNC=10706 | ||
|TSSclassifier=strong | |||
|UniProt=A8K6V0,O94855 | |UniProt=A8K6V0,O94855 | ||
|association_with_transcript=0bp_to_ENST00000379735,NM_014822,uc003ici.3,uc003icj.3_5end | |||
|cluster_id=chr4:119757322..119757334,- | |||
|coexpression_cluster_id=C1465 | |||
|description=CAGE_peak_3_at_SEC24D_5end | |||
|id=chr4:119757322..119757334,- | |||
|ontology_enrichment_celltype=CL:0000048!7.22e-27!430;CL:0000723!1.54e-25!436;CL:0000034!2.06e-24!444;CL:0002371!1.08e-21!591;CL:0000055!1.89e-20!180;CL:0000144!2.61e-19!625;CL:0002320!8.24e-17!365;CL:0000057!4.73e-16!75;CL:0000134!5.09e-16!358;CL:0000219!4.19e-12!390;CL:0000548!6.48e-12!679;CL:0000004!6.48e-12!679;CL:0000255!6.48e-12!679;CL:0000012!4.30e-11!682;CL:0000192!1.35e-09!42;CL:0000514!1.35e-09!42;CL:0000680!2.74e-09!57;CL:0000056!2.74e-09!57;CL:0000355!2.74e-09!57;CL:0000187!4.56e-09!54;CL:0000359!2.65e-08!32;CL:0000183!2.88e-08!59;CL:0000222!3.55e-08!119;CL:0000003!6.91e-08!722;CL:0000393!1.02e-07!60;CL:0000211!1.02e-07!60;CL:0000766!2.63e-07!76;CL:0002620!5.69e-07!23;CL:0002334!9.52e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:0000359;4.32e-08;32!CL:0002620;4.26e-07;23!CL:0000192;4.31e-07;43!CL:0002334;8.81e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000048,2.61e-28,427;CL:0000723,3.95e-27,433;CL:0000034,5.05e-26,441;CL:0002320,1.03e-17,361;CL:0000134,6.33e-17,354;CL:0000057,6.80e-17,76;CL:0000219,3.35e-13,386;CL:0000192,1.40e-09,43;CL:0000514,1.40e-09,43;CL:0000680,1.85e-09,58;CL:0000056,1.85e-09,58;CL:0000355,1.85e-09,58;CL:0000187,3.13e-09,55;CL:0000359,1.22e-08,32;CL:0000222,3.42e-08,121;CL:0000766,3.53e-08,72;CL:0000393,6.15e-08,61;CL:0000211,6.15e-08,61;CL:0002620,4.20e-07,23;CL:0000557,4.53e-07,67;CL:0002334,7.12e-07,12 | |||
|ontology_enrichment_development_v019=CL:0000514;4.31e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002204!9.34e-18!167;UBERON:0002384!1.19e-17!375;UBERON:0002049!2.46e-12!79;UBERON:0007798!2.46e-12!79;UBERON:0000926!3.29e-12!448;UBERON:0004120!3.29e-12!448;UBERON:0006603!3.29e-12!448;UBERON:0000914!6.01e-12!83;UBERON:0002329!6.01e-12!83;UBERON:0003077!6.01e-12!83;UBERON:0003059!6.01e-12!83;UBERON:0007282!6.01e-12!83;UBERON:0009618!6.01e-12!83;UBERON:0007285!6.01e-12!83;UBERON:0003081!5.10e-11!216;UBERON:0004535!1.10e-10!110;UBERON:0000055!1.98e-10!69;UBERON:0001981!2.76e-10!60;UBERON:0007500!2.76e-10!60;UBERON:0004537!2.76e-10!60;UBERON:0006965!2.76e-10!60;UBERON:0004290!9.39e-10!70;UBERON:0001009!1.62e-09!113;UBERON:0001637!1.68e-09!42;UBERON:0003509!1.68e-09!42;UBERON:0004572!1.68e-09!42;UBERON:0004872!2.67e-09!84;UBERON:0004765!6.74e-09!101;UBERON:0001434!6.74e-09!101;UBERON:0000486!1.21e-08!82;UBERON:0002385!4.63e-08!63;UBERON:0001015!4.63e-08!63;UBERON:0000383!4.63e-08!63;UBERON:0001134!6.53e-08!61;UBERON:0002036!6.53e-08!61;UBERON:0003082!6.53e-08!61;UBERON:0004573!7.81e-08!33;UBERON:0004571!7.81e-08!33;UBERON:0001474!3.55e-07!86;UBERON:0005256!7.50e-07!143 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;2.58e-07;42!UBERON:0003509;2.58e-07;42!UBERON:0004572;2.58e-07;42!UBERON:0004573;6.52e-07;33!UBERON:0004571;6.52e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,1.85e-21,315;UBERON:0004120,1.85e-21,315;UBERON:0006603,1.85e-21,315;UBERON:0002204,1.37e-19,167;UBERON:0002384,1.42e-18,371;UBERON:0003081,2.00e-14,203;UBERON:0002049,3.62e-12,78;UBERON:0007798,3.62e-12,78;UBERON:0004535,1.07e-10,109;UBERON:0001434,2.87e-10,100;UBERON:0000055,3.15e-10,68;UBERON:0007524,4.09e-10,73;UBERON:0007500,4.56e-10,59;UBERON:0001981,4.56e-10,59;UBERON:0004537,4.56e-10,59;UBERON:0006965,4.56e-10,59;UBERON:0002329,5.83e-10,71;UBERON:0003059,5.83e-10,71;UBERON:0007282,5.83e-10,71;UBERON:0004290,5.83e-10,71;UBERON:0009618,5.83e-10,71;UBERON:0001637,7.39e-10,42;UBERON:0003509,7.39e-10,42;UBERON:0004572,7.39e-10,42;UBERON:0003077,1.05e-09,72;UBERON:0007285,1.05e-09,72;UBERON:0001009,1.81e-09,112;UBERON:0004872,3.90e-09,83;UBERON:0000486,9.61e-09,83;UBERON:0007503,1.08e-08,78;UBERON:0004765,1.54e-08,90;UBERON:0002385,3.12e-08,64;UBERON:0001015,3.12e-08,64;UBERON:0000383,3.12e-08,64;UBERON:0001474,3.67e-08,82;UBERON:0001134,4.45e-08,62;UBERON:0002036,4.45e-08,62;UBERON:0003082,4.45e-08,62;UBERON:0004573,5.50e-08,33;UBERON:0004571,5.50e-08,33;UBERON:0000479,1.29e-07,773;UBERON:0002371,1.55e-07,76;UBERON:0005256,2.55e-07,122;UBERON:0000490,3.68e-07,148;UBERON:0002405,9.91e-07,93 | |||
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| ||
|short_description=p3@SEC24D | |||
}} | }} |
Latest revision as of 21:24, 24 September 2015
Short description: | p3@SEC24D |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SEC24D_5end |
Coexpression cluster: | C1465_Mast_Preadipocyte_Fibroblast_Smooth_Chondrocyte_basal_Osteoblast |
Association with transcript: | 0bp_to_ENST00000379735, NM_014822, uc003ici.3, uc003icj.3_5end |
EntrezGene: | SEC24D |
HGNC: | 10706 |
UniProt: | A8K6V0O94855 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multi fate stem cell | 2.61e-28 | 427 |
somatic stem cell | 3.95e-27 | 433 |
stem cell | 5.05e-26 | 441 |
connective tissue cell | 1.03e-17 | 361 |
mesenchymal cell | 6.33e-17 | 354 |
fibroblast | 6.80e-17 | 76 |
motile cell | 3.35e-13 | 386 |
smooth muscle cell | 1.40e-09 | 43 |
smooth muscle myoblast | 1.40e-09 | 43 |
muscle precursor cell | 1.85e-09 | 58 |
myoblast | 1.85e-09 | 58 |
multi-potent skeletal muscle stem cell | 1.85e-09 | 58 |
muscle cell | 3.13e-09 | 55 |
vascular associated smooth muscle cell | 1.22e-08 | 32 |
mesodermal cell | 3.42e-08 | 121 |
myeloid leukocyte | 3.53e-08 | 72 |
electrically responsive cell | 6.15e-08 | 61 |
electrically active cell | 6.15e-08 | 61 |
skin fibroblast | 4.20e-07 | 23 |
granulocyte monocyte progenitor cell | 4.53e-07 | 67 |
preadipocyte | 7.12e-07 | 12 |