FFCP PHASE1:Mm9::chr5:137506145..137506160,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=381677 | |EntrezGene=381677 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1 | |MCL_coexpression_id=1 | ||
|TSSclassifier=NA | |||
|UniProt=Q0VGU4 | |UniProt=Q0VGU4 | ||
|association_with_transcript=-4bp_to_ENSMUST00000041543,NM_001039385_5end | |association_with_transcript=-4bp_to_ENSMUST00000041543,NM_001039385_5end | ||
|cluster_id=chr5:137506145..137506160,+ | |||
|description=CAGE_peak_1_at_Vgf_5end | |description=CAGE_peak_1_at_Vgf_5end | ||
|id=chr5:137506145..137506160,+ | |id=chr5:137506145..137506160,+ | ||
|ontology_enrichment_celltype=CL:0002319!2.62e-16!43;CL:0000221!4.96e-16!44;CL:0000133!4.96e-16!44;CL:0000055!1.81e-12!50;CL:0000540!1.48e-11!33;CL:0000047!1.48e-11!33;CL:0000031!1.48e-11!33;CL:0000404!1.48e-11!33;CL:0000117!5.01e-09!23;CL:0000337!5.01e-09!23;CL:0000393!7.28e-09!39;CL:0000211!7.28e-09!39;CL:0002321!5.35e-07!70;CL:0000220!5.35e-07!70 | |ontology_enrichment_celltype=CL:0002319!2.62e-16!43;CL:0000221!4.96e-16!44;CL:0000133!4.96e-16!44;CL:0000055!1.81e-12!50;CL:0000540!1.48e-11!33;CL:0000047!1.48e-11!33;CL:0000031!1.48e-11!33;CL:0000404!1.48e-11!33;CL:0000117!5.01e-09!23;CL:0000337!5.01e-09!23;CL:0000393!7.28e-09!39;CL:0000211!7.28e-09!39;CL:0002321!5.35e-07!70;CL:0000220!5.35e-07!70 | ||
|ontology_enrichment_celltype_v019_2=CL:0002319,5.68e-18,43;CL:0000221,1.16e-17,44;CL:0000133,1.16e-17,44;CL:0000540,1.11e-12,33;CL:0000047,1.11e-12,33;CL:0000031,1.11e-12,33;CL:0000404,1.11e-12,33;CL:0000393,5.11e-10,39;CL:0000211,5.11e-10,39;CL:0000117,7.21e-10,23;CL:0000337,7.21e-10,23;CL:0002321,2.27e-07,70 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!2.39e-34!75;UBERON:0001016!2.39e-34!75;UBERON:0001017!4.62e-33!73;UBERON:0005743!4.62e-33!73;UBERON:0004121!1.25e-28!102;UBERON:0000924!1.25e-28!102;UBERON:0006601!1.25e-28!102;UBERON:0002346!6.02e-27!71;UBERON:0003075!6.02e-27!71;UBERON:0007284!6.02e-27!71;UBERON:0001049!2.35e-23!52;UBERON:0005068!2.35e-23!52;UBERON:0006241!2.35e-23!52;UBERON:0007135!2.35e-23!52;UBERON:0000955!1.33e-22!50;UBERON:0006238!1.33e-22!50;UBERON:0002616!5.19e-22!49;UBERON:0000033!1.30e-20!63;UBERON:0003080!7.45e-17!40;UBERON:0003056!9.50e-17!49;UBERON:0002020!2.90e-16!34;UBERON:0002780!3.18e-16!39;UBERON:0001890!3.18e-16!39;UBERON:0006240!3.18e-16!39;UBERON:0002791!1.36e-13!29;UBERON:0003528!1.36e-13!29;UBERON:0001893!1.36e-13!29;UBERON:0007811!2.76e-11!86;UBERON:0002619!8.54e-10!17;UBERON:0000956!2.52e-09!21;UBERON:0001869!2.52e-09!21;UBERON:0000203!2.52e-09!21;UBERON:0000153!2.54e-08!94;UBERON:0002021!4.27e-08!10;UBERON:0000411!4.27e-08!10;UBERON:0001950!4.27e-08!10;UBERON:0003076!3.63e-07!12;UBERON:0003057!3.63e-07!12 | |ontology_enrichment_uberon=UBERON:0000073!2.39e-34!75;UBERON:0001016!2.39e-34!75;UBERON:0001017!4.62e-33!73;UBERON:0005743!4.62e-33!73;UBERON:0004121!1.25e-28!102;UBERON:0000924!1.25e-28!102;UBERON:0006601!1.25e-28!102;UBERON:0002346!6.02e-27!71;UBERON:0003075!6.02e-27!71;UBERON:0007284!6.02e-27!71;UBERON:0001049!2.35e-23!52;UBERON:0005068!2.35e-23!52;UBERON:0006241!2.35e-23!52;UBERON:0007135!2.35e-23!52;UBERON:0000955!1.33e-22!50;UBERON:0006238!1.33e-22!50;UBERON:0002616!5.19e-22!49;UBERON:0000033!1.30e-20!63;UBERON:0003080!7.45e-17!40;UBERON:0003056!9.50e-17!49;UBERON:0002020!2.90e-16!34;UBERON:0002780!3.18e-16!39;UBERON:0001890!3.18e-16!39;UBERON:0006240!3.18e-16!39;UBERON:0002791!1.36e-13!29;UBERON:0003528!1.36e-13!29;UBERON:0001893!1.36e-13!29;UBERON:0007811!2.76e-11!86;UBERON:0002619!8.54e-10!17;UBERON:0000956!2.52e-09!21;UBERON:0001869!2.52e-09!21;UBERON:0000203!2.52e-09!21;UBERON:0000153!2.54e-08!94;UBERON:0002021!4.27e-08!10;UBERON:0000411!4.27e-08!10;UBERON:0001950!4.27e-08!10;UBERON:0003076!3.63e-07!12;UBERON:0003057!3.63e-07!12 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.75e-37,75;UBERON:0001017,4.69e-36,73;UBERON:0004121,1.13e-29,95;UBERON:0000924,1.13e-29,95;UBERON:0006601,1.13e-29,95;UBERON:0000073,5.04e-27,54;UBERON:0002346,2.45e-26,64;UBERON:0003075,2.45e-26,64;UBERON:0007284,2.45e-26,64;UBERON:0001049,2.86e-25,52;UBERON:0005068,2.86e-25,52;UBERON:0006241,2.86e-25,52;UBERON:0007135,2.86e-25,52;UBERON:0000955,4.96e-22,47;UBERON:0006238,4.96e-22,47;UBERON:0002616,2.16e-21,46;UBERON:0010371,1.29e-20,73;UBERON:0003080,4.59e-18,40;UBERON:0002020,6.36e-18,34;UBERON:0003056,9.36e-18,49;UBERON:0010314,1.71e-17,92;UBERON:0002780,2.28e-17,39;UBERON:0001890,2.28e-17,39;UBERON:0006240,2.28e-17,39;UBERON:0003528,6.02e-15,29;UBERON:0002791,6.02e-15,29;UBERON:0001893,6.02e-15,29;UBERON:0002619,1.01e-10,17;UBERON:0000956,3.36e-10,21;UBERON:0001869,3.36e-10,21;UBERON:0000203,3.36e-10,21;UBERON:0002021,7.80e-09,10;UBERON:0000411,7.80e-09,10;UBERON:0001950,7.80e-09,10;UBERON:0003076,8.41e-08,12;UBERON:0003057,8.41e-08,12 | |||
|phase1_expression=2.88267924788629,1.39590163055744,0.454999239389536,1.51232105653415,0.500895729946347,4.70061961353291,4.43864017131499,0,0.84473233291,1.40438715793196,0,0.0797721589953364,0,0,0,0,0,0,0,0,39.3750433399453,0,0,0.159992422793407,0.45881856213434,1.14846392823004,0.430761996159075,1.50829862880122,0.190023419456374,0.252030129759931,0.443461021310609,1.90509202037889,0,0,0.288851619751275,0,0.612508068787107,0,0,0,0,0,0,0,0,0.367093504323363,15.6478268869608,37.9363772101977,209.360932145952,82.8271370056447,34.2966732982138,123.627205353876,0,0,0,4.88792928468299,4.29800159908135,0,17.3992156339254,27.5075309221457,22.8179305262225,9.4876468979357,10.6715375533337,2.6996991518442,4.94433181283487,4.2628806896766,20.9720077362883,18.8266969607562,1.03689612308478,1.08004750665353,1.26194976810829,194.242669394586,188.400865431726,4.5321595709533,3.06705507258356,4.5960939330501,406.327600887744,286.785761339332,323.956178637418,30.3338461779446,33.4844775584819,27.6084086395083,312.126592883544,241.425159703591,260.826608955015,151.439092933465,135.253096759148,29.4511124403975,78.9066934531778,103.608608906403,1.15945795480671,0,0.679971333707751,0.539703191637817,0,0.448026887097336,12.4995533917259,0,0,0,1.12674735821344,0,0,0,0,0,0,7.9928715803342,0.258937883647172,22.7116472769182,7.11289839741157,6.69824052286711,7.37969591219387,15.976599898578,43.2726442259394,2.76466500925286,2.22475470960936,0.289198713839823,0,0,0,0,3.72783522436244,23.4224637609238,22.4107976290397,2.55457055208591,0.11981512450592,0,0,255.992202742842,248.880327933333,75.0156482113801,339.826545975901,305.835686967075,254.748142630021,242.712929549365,0.407357455401265,0,0,7.36546495602659,0.260240885925407,1.37941262660084,2.16074555766419,2.10986744970001,4.28629944653366,5.50888997224854,4.40398105430725,15.78090561508,0,0,0,0.43839146485515,0.278047249225598,0,0,0.199034266818493,0,0,0,0,0.234526059981096,0.36012412292203,0.23674473558521,0,0.154267112887378,0,0.268273401399619,0,0.16455984991348,0.164167464079095,0.0810688095458557,0,0,0.134206418760372,208.607628975614,51.8639246391594,1.32167513193519,0.793351699990633,1.70630600428187,1.16118335930219,1.54640953586512,1.21010114774006,4.00280478920767,3.99473814836374,1.89811624617805,2.79988223030818,2.26201687920243,2.78539060857611,3.11942539390592,0.898819408654221,1.51296634912286,1.39398891278057,0.948339504765408,0.456994050438915,1.1270773567308,0.203651327845314,0.387904974335251,0.420814919341911,0.126473074248515,0,0,0.123397163921801,0,0,0.589676985339609,0.224862112384854,0,0.241177159752417,0,0,0,0,1.43768206527355,0.372140947668503,0,0,0,0,0,0.757965647081939,0.325929952884052,0.169745085775188,0.234690248288502,0.167506257441816,0.238043640886014,0.390267295715598,0.315270288212382,0.221464689648775,0.159454768657487,0,0,0,0,0,0,0,249.977268610992,195.27466986261,0.163934945376675,0,12.6203287766503,14.8366722832723,19.1726823982191,5.9742199488138,8.91194696329577,12.7384438854975,5.66734982344852,9.9366991689846,9.09161889277004,146.201198971922,0.141940085208269,0.178065603667255,0.488660878060728,0,0,4.37005145078967,1.81394134178851,1.88605079755898,2.36241514304618,5.22639751504677,4.13485269069154,1.09060118843252,2.13898427030833,2.52829406348653,1.05418608574999,2.06271086496374,21.4476951624886,1.44048875225048,0.646793418913773,1.92903331528433,13.6551979904551,23.7230527410754,32.0870590174136,213.734394278449,24.6405293466896,7.41412248023371,5.07215315526412,0,0,0,0,0,0.874442509889552,211.570269593992,0,0.206386867963223,0,0,0.136694227721025,0,0.339956859987711,0.839708713941948,0.552799895217695,1.90934123603023,1.58167996790568,1.82987520414164,1.72808545314882,2.92723614420256,1.9652630737156,4.31565908431426,4.62859352061881,3.92633912976044,1.94422459937689,0,0,0,0,0,0.129159823477731,0.337912250981556,0.117357238645754,0.2604087696879,0,0,0.864090018773596,0.316011120628178,0.405450430580328,0,0.77952493786677,0.537080087002444,1.39076948346885,0.240390899039938,0.147689527174577,0.504832249740738,0.457240839929999,0.403304740547362,0.487289403698762,0.384847366561318,0.467507608726276,0.226730383615211,16.8709324564289,7.26682238536753,16.6205770200438,1.9318959403219,0.563047426353546,0,0,0,299.318476587045,285.861971870957,304.20751763632,337.347796940659,315.823041614266,303.66834675066,278.784292595736,421.050325014646,400.577889542037,485.141412111455,0.415149390336707,1.19707462020309,0.512200817262403,2.91728060481953,1.67690530102386,4.22840069435032,4.66718128383392,6.18105171716683,6.09746498224449,6.31743029409494,7.09742039692671,6.97917463128482,4.96299989590377,5.37811280200902,6.14559517825062,4.76293691283074,6.60540657885676,5.01563973205633,6.1812885120496,6.32955356577908,6.51451579532289,5.6792257970988,4.76872379894642,7.41266724824875,6.7758753899038,6.34609559187574,6.95126296916536,4.47218509444333,5.16055632614275,6.17256498823512,5.10130577933949,5.51625101303155,7.7753898202241,4.803042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|phase1_expression=2.88267924788629,1.39590163055744,0.454999239389536,1.51232105653415,0.500895729946347,4.70061961353291,4.43864017131499,0,0.84473233291,1.40438715793196,0,0.0797721589953364,0,0,0,0,0,0,0,0,39.3750433399453,0,0,0.159992422793407,0.45881856213434,1.14846392823004,0.430761996159075,1.50829862880122,0.190023419456374,0.252030129759931,0.443461021310609,1.90509202037889,0,0,0.288851619751275,0,0.612508068787107,0,0,0,0,0,0,0,0,0.367093504323363,15.6478268869608,37.9363772101977,209.360932145952,82.8271370056447,34.2966732982138,123.627205353876,0,0,0,4.88792928468299,4.29800159908135,0,17.3992156339254,27.5075309221457,22.8179305262225,9.4876468979357,10.6715375533337,2.6996991518442,4.94433181283487,4.2628806896766,20.9720077362883,18.8266969607562,1.03689612308478,1.08004750665353,1.26194976810829,194.242669394586,188.400865431726,4.5321595709533,3.06705507258356,4.5960939330501,406.327600887744,286.785761339332,323.956178637418,30.3338461779446,33.4844775584819,27.6084086395083,312.126592883544,241.425159703591,260.826608955015,151.439092933465,135.253096759148,29.4511124403975,78.9066934531778,103.608608906403,1.15945795480671,0,0.679971333707751,0.539703191637817,0,0.448026887097336,12.4995533917259,0,0,0,1.12674735821344,0,0,0,0,0,0,7.9928715803342,0.258937883647172,22.7116472769182,7.11289839741157,6.69824052286711,7.37969591219387,15.976599898578,43.2726442259394,2.76466500925286,2.22475470960936,0.289198713839823,0,0,0,0,3.72783522436244,23.4224637609238,22.4107976290397,2.55457055208591,0.11981512450592,0,0,255.992202742842,248.880327933333,75.0156482113801,339.826545975901,305.835686967075,254.748142630021,242.712929549365,0.407357455401265,0,0,7.36546495602659,0.260240885925407,1.37941262660084,2.16074555766419,2.10986744970001,4.28629944653366,5.50888997224854,4.40398105430725,15.78090561508,0,0,0,0.43839146485515,0.278047249225598,0,0,0.199034266818493,0,0,0,0,0.234526059981096,0.36012412292203,0.23674473558521,0,0.154267112887378,0,0.268273401399619,0,0.16455984991348,0.164167464079095,0.0810688095458557,0,0,0.134206418760372,208.607628975614,51.8639246391594,1.32167513193519,0.793351699990633,1.70630600428187,1.16118335930219,1.54640953586512,1.21010114774006,4.00280478920767,3.99473814836374,1.89811624617805,2.79988223030818,2.26201687920243,2.78539060857611,3.11942539390592,0.898819408654221,1.51296634912286,1.39398891278057,0.948339504765408,0.456994050438915,1.1270773567308,0.203651327845314,0.387904974335251,0.420814919341911,0.126473074248515,0,0,0.123397163921801,0,0,0.589676985339609,0.224862112384854,0,0.241177159752417,0,0,0,0,1.43768206527355,0.372140947668503,0,0,0,0,0,0.757965647081939,0.325929952884052,0.169745085775188,0.234690248288502,0.167506257441816,0.238043640886014,0.390267295715598,0.315270288212382,0.221464689648775,0.159454768657487,0,0,0,0,0,0,0,249.977268610992,195.27466986261,0.163934945376675,0,12.6203287766503,14.8366722832723,19.1726823982191,5.9742199488138,8.91194696329577,12.7384438854975,5.66734982344852,9.9366991689846,9.09161889277004,146.201198971922,0.141940085208269,0.178065603667255,0.488660878060728,0,0,4.37005145078967,1.81394134178851,1.88605079755898,2.36241514304618,5.22639751504677,4.13485269069154,1.09060118843252,2.13898427030833,2.52829406348653,1.05418608574999,2.06271086496374,21.4476951624886,1.44048875225048,0.646793418913773,1.92903331528433,13.6551979904551,23.7230527410754,32.0870590174136,213.734394278449,24.6405293466896,7.41412248023371,5.07215315526412,0,0,0,0,0,0.874442509889552,211.570269593992,0,0.206386867963223,0,0,0.136694227721025,0,0.339956859987711,0.839708713941948,0.552799895217695,1.90934123603023,1.58167996790568,1.82987520414164,1.72808545314882,2.92723614420256,1.9652630737156,4.31565908431426,4.62859352061881,3.92633912976044,1.94422459937689,0,0,0,0,0,0.129159823477731,0.337912250981556,0.117357238645754,0.2604087696879,0,0,0.864090018773596,0.316011120628178,0.405450430580328,0,0.77952493786677,0.537080087002444,1.39076948346885,0.240390899039938,0.147689527174577,0.504832249740738,0.457240839929999,0.403304740547362,0.487289403698762,0.384847366561318,0.467507608726276,0.226730383615211,16.8709324564289,7.26682238536753,16.6205770200438,1.9318959403219,0.563047426353546,0,0,0,299.318476587045,285.861971870957,304.20751763632,337.347796940659,315.823041614266,303.66834675066,278.784292595736,421.050325014646,400.577889542037,485.141412111455,0.415149390336707,1.19707462020309,0.512200817262403,2.91728060481953,1.67690530102386,4.22840069435032,4.66718128383392,6.18105171716683,6.09746498224449,6.31743029409494,7.09742039692671,6.97917463128482,4.96299989590377,5.37811280200902,6.14559517825062,4.76293691283074,6.60540657885676,5.01563973205633,6.1812885120496,6.32955356577908,6.51451579532289,5.6792257970988,4.76872379894642,7.41266724824875,6.7758753899038,6.34609559187574,6.95126296916536,4.47218509444333,5.16055632614275,6.17256498823512,5.10130577933949,5.51625101303155,7.7753898202241,4.803042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| ||
|short_description=p1@Vgf | |short_description=p1@Vgf | ||
}} | }} |
Latest revision as of 14:20, 25 September 2015
Short description: | p1@Vgf |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Vgf_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | -4bp_to_ENSMUST00000041543, NM_001039385_5end |
EntrezGene: | Vgf |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 5.68e-18 | 43 |
ectodermal cell | 1.16e-17 | 44 |
neurectodermal cell | 1.16e-17 | 44 |
neuron | 1.11e-12 | 33 |
neuronal stem cell | 1.11e-12 | 33 |
neuroblast | 1.11e-12 | 33 |
electrically signaling cell | 1.11e-12 | 33 |
electrically responsive cell | 5.11e-10 | 39 |
electrically active cell | 5.11e-10 | 39 |
CNS neuron (sensu Vertebrata) | 7.21e-10 | 23 |
neuroblast (sensu Vertebrata) | 7.21e-10 | 23 |
embryonic cell | 2.27e-07 | 70 |