FFCP PHASE1:Mm9::chr10:11063185..11063304,+: Difference between revisions
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{{FFCP|EntrezGene=13853|HGNC=|MCL_coexpression_id=1006|UniProt=G5E8E2,Q9WUA5|association_with_transcript=0bp_to_ENSMUST00000069106,ENSMUST00000161438,NM_010146,uc007eju.1,uc007ejv.1_5end|description=CAGE_peak_1_at_Epm2a_5end|id=chr10:11063185..11063304,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!6.41e-19!63;UBERON:0002346!4.25e-18!71;UBERON:0003075!4.25e-18!71;UBERON:0007284!4.25e-18!71;UBERON:0004121!8.94e-18!102;UBERON:0000924!8.94e-18!102;UBERON:0006601!8.94e-18!102;UBERON:0001017!4.91e-17!73;UBERON:0005743!4.91e-17!73;UBERON:0001049!9.83e-17!52;UBERON:0005068!9.83e-17!52;UBERON:0006241!9.83e-17!52;UBERON:0007135!9.83e-17!52;UBERON:0000955!4.63e-16!50;UBERON:0006238!4.63e-16!50;UBERON:0000073!7.30e-16!75;UBERON:0001016!7.30e-16!75;UBERON:0002616!1.86e-15!49;UBERON:0004111!7.69e-15!122;UBERON:0000025!3.24e-14!114;UBERON:0003056!1.80e-13!49;UBERON:0002020!5.74e-12!34;UBERON:0003080!1.55e-11!40;UBERON:0002780!5.91e-11!39;UBERON:0001890!5.91e-11!39;UBERON:0006240!5.91e-11!39;UBERON:0002791!1.80e-09!29;UBERON:0003528!1.80e-09!29;UBERON:0001893!1.80e-09!29;UBERON:0002021!2.08e-07!10;UBERON:0000411!2.08e-07!10;UBERON:0001950!2.08e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0010314,4.22e-22,92;UBERON:0002346,1.90e-18,64;UBERON:0003075,1.90e-18,64;UBERON:0007284,1.90e-18,64;UBERON:0000073,4.27e-18,54;UBERON:0010371,1.28e-17,73;UBERON:0004121,1.35e-17,95;UBERON:0000924,1.35e-17,95;UBERON:0006601,1.35e-17,95;UBERON:0001017,5.48e-17,73;UBERON:0001049,1.12e-16,52;UBERON:0005068,1.12e-16,52;UBERON:0006241,1.12e-16,52;UBERON:0007135,1.12e-16,52;UBERON:0001016,9.62e-16,75;UBERON:0004111,8.97e-15,122;UBERON:0000025,3.78e-14,114;UBERON:0000955,4.88e-14,47;UBERON:0006238,4.88e-14,47;UBERON:0002616,1.86e-13,46;UBERON:0003056,2.03e-13,49;UBERON:0002020,6.60e-12,34;UBERON:0003080,1.76e-11,40;UBERON:0002780,6.68e-11,39;UBERON:0001890,6.68e-11,39;UBERON:0006240,6.68e-11,39;UBERON:0003528,2.06e-09,29;UBERON:0002791,2.06e-09,29;UBERON:0001893,2.06e-09,29;UBERON:0002021,2.05e-07,10;UBERON:0000411,2.05e-07,10;UBERON:0001950,2.05e-07,10|phase1_expression=8.32774004944929,0,0.909998478779072,0.30246421130683,0.500895729946347,1.17515490338323,1.16806320297763,0.387369970324729,0,0,0,0.0797721589953364,0.342401459862411,0.0874204024189974,1.66554880907831,1.61980213911861,2.09868563438444,0.946386496074713,1.64537320326887,1.69755860719212,10.4603246885816,1.78723712161594,0.783599367416806,0.95995453676044,0.91763712426868,0.57423196411502,0.86152399231815,1.07735616342945,1.90023419456374,1.26015064879965,0.665191531965914,1.27006134691926,0,0,2.3108129580102,1.99481574430191,2.85837098767317,2.51118978442145,2.3440060335714,1.57057123192139,5.29408339227913,1.36609096991689,1.94204141212461,5.03587271902309,3.54819259268301,1.28482726513177,5.47673941043627,5.45062890951116,8.5677611266444,9.3326351555656,3.63964696225943,4.31257693094915,1.17447824240415,0.725362142011344,0,1.28629718017973,3.43840127926508,4.12537673821954,12.3413041124355,10.0508286061686,7.60597684207415,0.677689064138264,0.889294796111139,9.89889689009539,5.93319817540185,7.8152812644071,4.79360176829448,2.30530983192933,3.00699875694585,3.24014251996058,4.6271491497304,26.2798905651499,25.1790136684839,5.38959516545798,3.45043695665651,0.919218786610021,33.0347642998166,32.1772091974673,33.0254046500923,9.89147157976454,12.8997577479398,11.4600941522487,27.9182999001381,25.3243174514256,27.9620793431563,22.9810296669461,16.9422300150933,13.4207600994216,0.984440513331393,2.94729084416464,9.85539261585705,6.88339101585109,4.75979933595425,7.01614149129162,9.09686984426737,8.06448396775204,20.364440919104,3.40860645156115,2.33807404142582,5.3000936176551,4.50698943285378,5.13305909657271,2.54805239706646,0,1.29894624606728,1.26679932737549,0,8.67797485864856,3.36619248741323,8.75808620482466,3.81667718885499,2.13125834818499,4.15107895060905,6.33035090321015,6.93773372100658,6.03199638382442,1.97755974187499,10.5557530551536,9.73071607144862,14.3972496453194,15.0172232553068,13.5765070877862,1.86391761218122,22.2513405728776,24.7147114039877,2.04365644166873,2.75574786363617,2.39961092397363,2.41433431438823,28.1606402081067,22.8750301409313,10.5549655774806,28.6810128317256,28.640131220997,24.7267773025876,24.4984307232314,4.27725328171328,9.20611582514688,13.3943061969848,17.8875577503503,2.86264974517948,4.36813998423599,7.38254732201932,7.68594570962147,12.7228253412983,11.1458936647819,13.8678552348399,24.5768202202065,0.862271971731369,2.45837904218165,3.16712023495108,3.72632745126877,3.61461423993277,3.48252166522167,4.11564272815887,3.98068533636986,2.1066395619397,2.83082697826187,1.42081749697796,4.97101854085205,6.0976775595085,5.76198596675248,5.20838418287463,6.68998387941173,7.25055430570678,7.90615412151387,10.9992094573844,10.0418194435766,10.8609500942897,10.9992200932994,20.2672023864639,19.2983983401439,19.3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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=13853 | |||
|HGNC= | |||
|MCL_coexpression_id=1006 | |||
|TSSclassifier=NA | |||
|UniProt=G5E8E2,Q9WUA5 | |||
|association_with_transcript=0bp_to_ENSMUST00000069106,ENSMUST00000161438,NM_010146,uc007eju.1,uc007ejv.1_5end | |||
|cluster_id=chr10:11063185..11063304,+ | |||
|description=CAGE_peak_1_at_Epm2a_5end | |||
|id=chr10:11063185..11063304,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!6.41e-19!63;UBERON:0002346!4.25e-18!71;UBERON:0003075!4.25e-18!71;UBERON:0007284!4.25e-18!71;UBERON:0004121!8.94e-18!102;UBERON:0000924!8.94e-18!102;UBERON:0006601!8.94e-18!102;UBERON:0001017!4.91e-17!73;UBERON:0005743!4.91e-17!73;UBERON:0001049!9.83e-17!52;UBERON:0005068!9.83e-17!52;UBERON:0006241!9.83e-17!52;UBERON:0007135!9.83e-17!52;UBERON:0000955!4.63e-16!50;UBERON:0006238!4.63e-16!50;UBERON:0000073!7.30e-16!75;UBERON:0001016!7.30e-16!75;UBERON:0002616!1.86e-15!49;UBERON:0004111!7.69e-15!122;UBERON:0000025!3.24e-14!114;UBERON:0003056!1.80e-13!49;UBERON:0002020!5.74e-12!34;UBERON:0003080!1.55e-11!40;UBERON:0002780!5.91e-11!39;UBERON:0001890!5.91e-11!39;UBERON:0006240!5.91e-11!39;UBERON:0002791!1.80e-09!29;UBERON:0003528!1.80e-09!29;UBERON:0001893!1.80e-09!29;UBERON:0002021!2.08e-07!10;UBERON:0000411!2.08e-07!10;UBERON:0001950!2.08e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,4.22e-22,92;UBERON:0002346,1.90e-18,64;UBERON:0003075,1.90e-18,64;UBERON:0007284,1.90e-18,64;UBERON:0000073,4.27e-18,54;UBERON:0010371,1.28e-17,73;UBERON:0004121,1.35e-17,95;UBERON:0000924,1.35e-17,95;UBERON:0006601,1.35e-17,95;UBERON:0001017,5.48e-17,73;UBERON:0001049,1.12e-16,52;UBERON:0005068,1.12e-16,52;UBERON:0006241,1.12e-16,52;UBERON:0007135,1.12e-16,52;UBERON:0001016,9.62e-16,75;UBERON:0004111,8.97e-15,122;UBERON:0000025,3.78e-14,114;UBERON:0000955,4.88e-14,47;UBERON:0006238,4.88e-14,47;UBERON:0002616,1.86e-13,46;UBERON:0003056,2.03e-13,49;UBERON:0002020,6.60e-12,34;UBERON:0003080,1.76e-11,40;UBERON:0002780,6.68e-11,39;UBERON:0001890,6.68e-11,39;UBERON:0006240,6.68e-11,39;UBERON:0003528,2.06e-09,29;UBERON:0002791,2.06e-09,29;UBERON:0001893,2.06e-09,29;UBERON:0002021,2.05e-07,10;UBERON:0000411,2.05e-07,10;UBERON:0001950,2.05e-07,10 | |||
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| |||
|short_description=p1@Epm2a | |||
}} |
Latest revision as of 14:27, 25 September 2015
Short description: | p1@Epm2a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Epm2a_5end |
Coexpression cluster: | MCL_coexpression_mm9:1006 |
Association with transcript: | 0bp_to_ENSMUST00000069106, ENSMUST00000161438, NM_010146, uc007eju.1, uc007ejv.1_5end |
EntrezGene: | Epm2a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
structure with developmental contribution from neural crest | 4.22e-22 | 92 |
neurectoderm | 1.90e-18 | 64 |
neural plate | 1.90e-18 | 64 |
presumptive neural plate | 1.90e-18 | 64 |
regional part of nervous system | 4.27e-18 | 54 |
ecto-epithelium | 1.28e-17 | 73 |
ectoderm-derived structure | 1.35e-17 | 95 |
ectoderm | 1.35e-17 | 95 |
presumptive ectoderm | 1.35e-17 | 95 |
central nervous system | 5.48e-17 | 73 |
neural tube | 1.12e-16 | 52 |
neural rod | 1.12e-16 | 52 |
future spinal cord | 1.12e-16 | 52 |
neural keel | 1.12e-16 | 52 |
nervous system | 9.62e-16 | 75 |
anatomical conduit | 8.97e-15 | 122 |
tube | 3.78e-14 | 114 |
brain | 4.88e-14 | 47 |
future brain | 4.88e-14 | 47 |
regional part of brain | 1.86e-13 | 46 |
pre-chordal neural plate | 2.03e-13 | 49 |
gray matter | 6.60e-12 | 34 |
anterior neural tube | 1.76e-11 | 40 |
regional part of forebrain | 6.68e-11 | 39 |
forebrain | 6.68e-11 | 39 |
future forebrain | 6.68e-11 | 39 |
brain grey matter | 2.06e-09 | 29 |
regional part of telencephalon | 2.06e-09 | 29 |
telencephalon | 2.06e-09 | 29 |
occipital lobe | 2.05e-07 | 10 |
visual cortex | 2.05e-07 | 10 |
neocortex | 2.05e-07 | 10 |