FFCP PHASE1:Mm9::chr16:4789865..4789885,-: Difference between revisions
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{{FFCP|EntrezGene=66626|HGNC=|UniProt=Q9DB75|association_with_transcript=44bp_to_ENSMUST00000117713_5end|description=CAGE_peak_3_at_5730403B10Rik_5end|id=chr16:4789865..4789885,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.10e-15!73;UBERON:0005743!2.10e-15!73;UBERON:0000073!2.16e-14!75;UBERON:0001016!2.16e-14!75;UBERON:0002346!7.53e-13!71;UBERON:0003075!7.53e-13!71;UBERON:0007284!7.53e-13!71;UBERON:0001049!1.56e-12!52;UBERON:0005068!1.56e-12!52;UBERON:0006241!1.56e-12!52;UBERON:0007135!1.56e-12!52;UBERON:0000025!2.35e-12!114;UBERON:0004121!1.68e-11!102;UBERON:0000924!1.68e-11!102;UBERON:0006601!1.68e-11!102;UBERON:0000955!2.79e-11!50;UBERON:0006238!2.79e-11!50;UBERON:0002616!9.17e-11!49;UBERON:0000033!4.58e-10!63;UBERON:0004111!6.99e-10!122;UBERON:0000468!1.79e-08!333;UBERON:0002020!1.91e-08!34;UBERON:0003056!9.69e-08!49;UBERON:0003080!1.50e-07!40;UBERON:0002780!3.44e-07!39;UBERON:0001890!3.44e-07!39;UBERON:0006240!3.44e-07!39|ontology_enrichment_uberon_v019_2=UBERON:0010314,4.15e-16,92;UBERON:0001017,9.34e-16,73;UBERON:0001016,1.79e-14,75;UBERON:0000073,8.72e-14,54;UBERON:0002346,7.76e-13,64;UBERON:0003075,7.76e-13,64;UBERON:0007284,7.76e-13,64;UBERON:0001049,9.50e-13,52;UBERON:0005068,9.50e-13,52;UBERON:0006241,9.50e-13,52;UBERON:0007135,9.50e-13,52;UBERON:0000025,5.37e-11,114;UBERON:0004121,1.05e-10,95;UBERON:0000924,1.05e-10,95;UBERON:0006601,1.05e-10,95;UBERON:0000955,5.88e-10,47;UBERON:0006238,5.88e-10,47;UBERON:0010371,1.53e-09,73;UBERON:0002616,1.91e-09,46;UBERON:0004111,1.04e-08,122;UBERON:0002020,1.74e-08,34;UBERON:0003056,1.28e-07,49;UBERON:0003080,1.38e-07,40;UBERON:0002780,3.25e-07,39;UBERON:0001890,3.25e-07,39;UBERON:0006240,3.25e-07,39;UBERON:0003076,6.81e-07,12;UBERON:0003057,6.81e-07,12|phase1_expression=2.40223270657191,0.348975407639361,0.454999239389536,1.51232105653415,1.00179145989269,0.16787927191189,0.700837921786577,0,1.40788722151667,2.80877431586392,0.171217968225505,0.239316476986009,0.171200729931206,0.174840804837995,0,0.202475267389826,0,0.157731082679119,0.137114433605739,0,1.87095238332354,0,1.04479915655574,0.799962113967033,0.22940928106717,0.57423196411502,0.430761996159075,0.646413698057667,0,0.756090389279792,0,0,0.61506478758457,0,0,0.831173226792462,0.408338712524738,0,0,0,0,0,0,0.881277725829041,0.811015449756117,1.28482726513177,2.34717403304412,2.61630187656536,3.73466510648602,4.47188767870852,1.53985063787899,1.43752564364972,0.167782606057736,0,0.336093799142464,0.514518872071894,0.286533439938757,0.515672092277442,2.83243045203437,3.1739458756322,5.07065122804943,1.35537812827653,0.889294796111139,0,0,0,5.99200221036809,8.4528027170742,1.14058573539325,0.945041568321835,1.26194976810829,12.8542942981712,13.2521124570968,1.71487118900936,1.24599112323707,2.75765635983006,6.60695285996332,5.61824287574826,6.14426133024974,3.29715719325485,3.65950574409639,2.08365348222704,6.42120897703176,6.75315132038016,6.26472815884921,6.48182888042069,9.5389026135399,4.84638559145781,0.227178579999552,0.982430281388212,0.579728977403356,0.860423876981386,3.39985666853875,7.01614149129162,3.89865850468601,7.6164570806547,2.94933282276679,0.340860645156116,0.259786004602869,0.35333957451034,1.54927761754349,0,0,0,0.432982082022428,0,0,5.25245846707676,0.258937883647172,1.92974780784272,2.08182392119363,3.04465478312141,2.07553947530453,3.01445281105245,3.29248379979973,1.50799909595611,2.96633961281249,9.25435884287435,0,3.39710384889559,0.883366073841574,0,0,4.68449275218475,4.81727425670947,1.27728527604296,0,0,0.127070227073065,4.6435098215495,3.66000482254901,3.01570445070875,4.17178368461463,2.55715457330331,6.85700547046548,8.59878694259116,2.03678727700633,0.870848794270651,0.252722758433675,0.841767423545896,3.3831315170303,3.21862946206862,2.52086981727489,3.91832526372859,2.10913147369116,2.17793324484245,2.43624483855295,2.06962696591213,3.66465587985832,3.9712276835242,3.69497360744293,3.72632745126877,3.05851974148158,3.1342694986995,1.23469281844766,4.57778813682534,0,0.257347907114715,0,8.28503090142008,6.3322036194896,4.50155153652537,5.68187365404505,6.88674811115913,5.707883176833,7.44108623201305,4.82892122519315,4.55384835231961,6.41783414662574,3.2833492815819,2.59420190546738,3.50879969820798,2.85415149878366,2.14730270016595,7.78072809687271,3.49875682089567,2.31293148088659,1.58670339998127,4.26576501070468,3.71578674976702,1.80414445850931,1.61346819698674,2.66853652613844,2.09248188723815,3.79623249235609,1.31759163779209,3.51869292320377,2.98434708061726,1.9496408711912,0.898819408654221,0.648414149624083,1.39398891278057,5.50036912763937,2.85621281524322,4.50830942692322,3.25842124552503,1.55161989734101,2.52488951605147,2.33975187359752,1.91893192373483,0.784993639206874,1.1105744752962,3.26097889795864,1.00107063429656,0.589676985339609,0.674586337154561,0.608580364165509,1.4470629585145,1.78238096246994,1.726176824704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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=66626 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=Q9DB75 | |||
|association_with_transcript=44bp_to_ENSMUST00000117713_5end | |||
|cluster_id=chr16:4789865..4789885,- | |||
|description=CAGE_peak_3_at_5730403B10Rik_5end | |||
|id=chr16:4789865..4789885,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.10e-15!73;UBERON:0005743!2.10e-15!73;UBERON:0000073!2.16e-14!75;UBERON:0001016!2.16e-14!75;UBERON:0002346!7.53e-13!71;UBERON:0003075!7.53e-13!71;UBERON:0007284!7.53e-13!71;UBERON:0001049!1.56e-12!52;UBERON:0005068!1.56e-12!52;UBERON:0006241!1.56e-12!52;UBERON:0007135!1.56e-12!52;UBERON:0000025!2.35e-12!114;UBERON:0004121!1.68e-11!102;UBERON:0000924!1.68e-11!102;UBERON:0006601!1.68e-11!102;UBERON:0000955!2.79e-11!50;UBERON:0006238!2.79e-11!50;UBERON:0002616!9.17e-11!49;UBERON:0000033!4.58e-10!63;UBERON:0004111!6.99e-10!122;UBERON:0000468!1.79e-08!333;UBERON:0002020!1.91e-08!34;UBERON:0003056!9.69e-08!49;UBERON:0003080!1.50e-07!40;UBERON:0002780!3.44e-07!39;UBERON:0001890!3.44e-07!39;UBERON:0006240!3.44e-07!39 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,4.15e-16,92;UBERON:0001017,9.34e-16,73;UBERON:0001016,1.79e-14,75;UBERON:0000073,8.72e-14,54;UBERON:0002346,7.76e-13,64;UBERON:0003075,7.76e-13,64;UBERON:0007284,7.76e-13,64;UBERON:0001049,9.50e-13,52;UBERON:0005068,9.50e-13,52;UBERON:0006241,9.50e-13,52;UBERON:0007135,9.50e-13,52;UBERON:0000025,5.37e-11,114;UBERON:0004121,1.05e-10,95;UBERON:0000924,1.05e-10,95;UBERON:0006601,1.05e-10,95;UBERON:0000955,5.88e-10,47;UBERON:0006238,5.88e-10,47;UBERON:0010371,1.53e-09,73;UBERON:0002616,1.91e-09,46;UBERON:0004111,1.04e-08,122;UBERON:0002020,1.74e-08,34;UBERON:0003056,1.28e-07,49;UBERON:0003080,1.38e-07,40;UBERON:0002780,3.25e-07,39;UBERON:0001890,3.25e-07,39;UBERON:0006240,3.25e-07,39;UBERON:0003076,6.81e-07,12;UBERON:0003057,6.81e-07,12 | |||
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| |||
|short_description=p3@5730403B10Rik | |||
}} |
Latest revision as of 14:44, 25 September 2015
Short description: | p3@5730403B10Rik |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_5730403B10Rik_5end |
Coexpression cluster: | NA |
Association with transcript: | 44bp_to_ENSMUST00000117713_5end |
EntrezGene: | 5730403B10Rik |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
structure with developmental contribution from neural crest | 4.15e-16 | 92 |
central nervous system | 9.34e-16 | 73 |
nervous system | 1.79e-14 | 75 |
regional part of nervous system | 8.72e-14 | 54 |
neurectoderm | 7.76e-13 | 64 |
neural plate | 7.76e-13 | 64 |
presumptive neural plate | 7.76e-13 | 64 |
neural tube | 9.50e-13 | 52 |
neural rod | 9.50e-13 | 52 |
future spinal cord | 9.50e-13 | 52 |
neural keel | 9.50e-13 | 52 |
tube | 5.37e-11 | 114 |
ectoderm-derived structure | 1.05e-10 | 95 |
ectoderm | 1.05e-10 | 95 |
presumptive ectoderm | 1.05e-10 | 95 |
brain | 5.88e-10 | 47 |
future brain | 5.88e-10 | 47 |
ecto-epithelium | 1.53e-09 | 73 |
regional part of brain | 1.91e-09 | 46 |
anatomical conduit | 1.04e-08 | 122 |
gray matter | 1.74e-08 | 34 |
pre-chordal neural plate | 1.28e-07 | 49 |
anterior neural tube | 1.38e-07 | 40 |
regional part of forebrain | 3.25e-07 | 39 |
forebrain | 3.25e-07 | 39 |
future forebrain | 3.25e-07 | 39 |
posterior neural tube | 6.81e-07 | 12 |
chordal neural plate | 6.81e-07 | 12 |