FFCP PHASE1:Mm9::chr14:12386216..12386287,+: Difference between revisions
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{{FFCP|EntrezGene=19270|HGNC=|UniProt=|association_with_transcript=121bp_to_ENSMUST00000148113_5end|description=CAGE_peak_5_at_Ptprg_5end|id=chr14:12386216..12386287,+|ontology_enrichment_celltype=CL:0000055!8.98e-10!50;CL:0000221!2.01e-09!44;CL:0000133!2.01e-09!44;CL:0002319!2.37e-09!43;CL:0000393!8.87e-09!39;CL:0000211!8.87e-09!39;CL:0000540!6.26e-08!33;CL:0000047!6.26e-08!33;CL:0000031!6.26e-08!33;CL:0000404!6.26e-08!33;CL:0000117!9.79e-08!23;CL:0000337!9.79e-08!23|ontology_enrichment_celltype_v019_2=CL:0000221,2.48e-09,44;CL:0000133,2.48e-09,44;CL:0002319,2.94e-09,43;CL:0000393,6.38e-09,39;CL:0000211,6.38e-09,39;CL:0000540,4.67e-08,33;CL:0000047,4.67e-08,33;CL:0000031,4.67e-08,33;CL:0000404,4.67e-08,33;CL:0000117,7.38e-08,23;CL:0000337,7.38e-08,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!9.55e-23!73;UBERON:0005743!9.55e-23!73;UBERON:0000073!2.72e-21!75;UBERON:0001016!2.72e-21!75;UBERON:0004121!1.64e-18!102;UBERON:0000924!1.64e-18!102;UBERON:0006601!1.64e-18!102;UBERON:0001049!3.18e-18!52;UBERON:0005068!3.18e-18!52;UBERON:0006241!3.18e-18!52;UBERON:0007135!3.18e-18!52;UBERON:0002346!1.09e-17!71;UBERON:0003075!1.09e-17!71;UBERON:0007284!1.09e-17!71;UBERON:0000033!3.67e-16!63;UBERON:0000955!8.68e-16!50;UBERON:0006238!8.68e-16!50;UBERON:0002616!3.36e-15!49;UBERON:0003056!5.54e-13!49;UBERON:0003080!2.71e-12!40;UBERON:0002020!9.77e-12!34;UBERON:0002780!1.00e-11!39;UBERON:0001890!1.00e-11!39;UBERON:0006240!1.00e-11!39;UBERON:0000025!4.77e-11!114;UBERON:0000468!6.36e-11!333;UBERON:0004111!1.68e-10!122;UBERON:0002791!8.94e-09!29;UBERON:0003528!8.94e-09!29;UBERON:0001893!8.94e-09!29;UBERON:0000153!1.51e-08!94;UBERON:0000922!3.80e-08!328;UBERON:0000479!2.33e-07!349;UBERON:0000956!5.33e-07!21;UBERON:0001869!5.33e-07!21;UBERON:0000203!5.33e-07!21;UBERON:0003076!5.71e-07!12;UBERON:0003057!5.71e-07!12|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.63e-23,73;UBERON:0001016,2.27e-21,75;UBERON:0002346,2.19e-19,64;UBERON:0003075,2.19e-19,64;UBERON:0007284,2.19e-19,64;UBERON:0004121,3.69e-19,95;UBERON:0000924,3.69e-19,95;UBERON:0006601,3.69e-19,95;UBERON:0000073,9.32e-19,54;UBERON:0001049,1.48e-18,52;UBERON:0005068,1.48e-18,52;UBERON:0006241,1.48e-18,52;UBERON:0007135,1.48e-18,52;UBERON:0010371,1.85e-17,73;UBERON:0000955,3.30e-15,47;UBERON:0006238,3.30e-15,47;UBERON:0010314,9.70e-15,92;UBERON:0002616,1.29e-14,46;UBERON:0003056,3.29e-13,49;UBERON:0003080,1.66e-12,40;UBERON:0002020,6.14e-12,34;UBERON:0002780,6.29e-12,39;UBERON:0001890,6.29e-12,39;UBERON:0006240,6.29e-12,39;UBERON:0000025,2.62e-10,114;UBERON:0004111,1.04e-09,122;UBERON:0003528,6.43e-09,29;UBERON:0002791,6.43e-09,29;UBERON:0001893,6.43e-09,29;UBERON:0000956,4.15e-07,21;UBERON:0001869,4.15e-07,21;UBERON:0000203,4.15e-07,21;UBERON:0003076,4.46e-07,12;UBERON:0003057,4.46e-07,12;UBERON:0000922,4.81e-07,320|phase1_expression=6.72625157840135,0.697950815278722,0.454999239389536,0.60492842261366,0.500895729946347,0.16787927191189,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,4.25216450755349,0,0,0.319984845586813,0.22940928106717,0,0.430761996159075,0.430942465371778,0.380046838912748,0.252030129759931,0.886922042621219,0,0,0,0.866554859253824,0.166234645358492,1.02084678131185,0,0,0,0,0,0,8.3091899863881,8.61703915365874,4.22157529971868,4.69434806608824,3.70642765846759,7.90870257844099,10.6936444490856,5.73944328663986,7.18762821824858,0,0,0,4.63066984864705,2.0057340795713,1.54701627683233,5.26022798234954,4.7609188134483,5.70448263155561,2.71075625655306,2.66788438833342,0,0,0,3.29560121570245,4.99483796918021,5.59923906465779,4.18518408828241,6.09942387919008,12.5686433137674,6.40518768759679,1.71487118900936,2.68367318851062,4.5960939330501,5.50579404996943,4.46905683298157,4.14737639791857,4.74790635828698,4.84884511092771,5.2091337055676,3.62937898701795,5.06486349028512,3.66715794664344,14.7314292736834,16.657486653495,9.50637173709033,0.908714319998209,0.377857800533928,6.95674772884027,0.860423876981386,0,1.07940638327563,1.29955283489534,0,0.561777680527007,1.53387290320252,1.55871602761721,0.70667914902068,3.66192891419369,0,2.54805239706646,7.11066703153331,0,1.26679932737549,1.01104889002957,1.25602267690966,1.29468941823586,4.15637989381509,1.90833859442749,2.43572382649713,1.84492397804847,1.20578112442098,5.05631440683531,1.25666591329675,2.22475470960936,5.35017620603673,0,2.91180329905337,1.10420759230197,0.969750506270444,3.72783522436244,4.9772735491963,7.95897485891129,1.02182822083437,0,0,0,8.23848516726525,6.8625090422794,3.64397621127307,6.95297280769106,6.39288643325826,8.10373373782284,8.59878694259116,3.86989582631202,1.99051152976149,0.758168275301024,1.05220927943237,7.67710613479952,5.74755261083682,5.04173963454978,3.0140963567143,5.44291993210623,2.69038812598185,3.09215691047105,3.10444044886819,5.38919982332106,6.99692496620931,11.4368230706567,8.32943783224784,7.78532297831674,5.57203466435466,3.2925141825271,5.37392520409932,0,0,0,2.48550927042602,2.345260599810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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=19270 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=121bp_to_ENSMUST00000148113_5end | |||
|cluster_id=chr14:12386216..12386287,+ | |||
|description=CAGE_peak_5_at_Ptprg_5end | |||
|id=chr14:12386216..12386287,+ | |||
|ontology_enrichment_celltype=CL:0000055!8.98e-10!50;CL:0000221!2.01e-09!44;CL:0000133!2.01e-09!44;CL:0002319!2.37e-09!43;CL:0000393!8.87e-09!39;CL:0000211!8.87e-09!39;CL:0000540!6.26e-08!33;CL:0000047!6.26e-08!33;CL:0000031!6.26e-08!33;CL:0000404!6.26e-08!33;CL:0000117!9.79e-08!23;CL:0000337!9.79e-08!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,2.48e-09,44;CL:0000133,2.48e-09,44;CL:0002319,2.94e-09,43;CL:0000393,6.38e-09,39;CL:0000211,6.38e-09,39;CL:0000540,4.67e-08,33;CL:0000047,4.67e-08,33;CL:0000031,4.67e-08,33;CL:0000404,4.67e-08,33;CL:0000117,7.38e-08,23;CL:0000337,7.38e-08,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!9.55e-23!73;UBERON:0005743!9.55e-23!73;UBERON:0000073!2.72e-21!75;UBERON:0001016!2.72e-21!75;UBERON:0004121!1.64e-18!102;UBERON:0000924!1.64e-18!102;UBERON:0006601!1.64e-18!102;UBERON:0001049!3.18e-18!52;UBERON:0005068!3.18e-18!52;UBERON:0006241!3.18e-18!52;UBERON:0007135!3.18e-18!52;UBERON:0002346!1.09e-17!71;UBERON:0003075!1.09e-17!71;UBERON:0007284!1.09e-17!71;UBERON:0000033!3.67e-16!63;UBERON:0000955!8.68e-16!50;UBERON:0006238!8.68e-16!50;UBERON:0002616!3.36e-15!49;UBERON:0003056!5.54e-13!49;UBERON:0003080!2.71e-12!40;UBERON:0002020!9.77e-12!34;UBERON:0002780!1.00e-11!39;UBERON:0001890!1.00e-11!39;UBERON:0006240!1.00e-11!39;UBERON:0000025!4.77e-11!114;UBERON:0000468!6.36e-11!333;UBERON:0004111!1.68e-10!122;UBERON:0002791!8.94e-09!29;UBERON:0003528!8.94e-09!29;UBERON:0001893!8.94e-09!29;UBERON:0000153!1.51e-08!94;UBERON:0000922!3.80e-08!328;UBERON:0000479!2.33e-07!349;UBERON:0000956!5.33e-07!21;UBERON:0001869!5.33e-07!21;UBERON:0000203!5.33e-07!21;UBERON:0003076!5.71e-07!12;UBERON:0003057!5.71e-07!12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.63e-23,73;UBERON:0001016,2.27e-21,75;UBERON:0002346,2.19e-19,64;UBERON:0003075,2.19e-19,64;UBERON:0007284,2.19e-19,64;UBERON:0004121,3.69e-19,95;UBERON:0000924,3.69e-19,95;UBERON:0006601,3.69e-19,95;UBERON:0000073,9.32e-19,54;UBERON:0001049,1.48e-18,52;UBERON:0005068,1.48e-18,52;UBERON:0006241,1.48e-18,52;UBERON:0007135,1.48e-18,52;UBERON:0010371,1.85e-17,73;UBERON:0000955,3.30e-15,47;UBERON:0006238,3.30e-15,47;UBERON:0010314,9.70e-15,92;UBERON:0002616,1.29e-14,46;UBERON:0003056,3.29e-13,49;UBERON:0003080,1.66e-12,40;UBERON:0002020,6.14e-12,34;UBERON:0002780,6.29e-12,39;UBERON:0001890,6.29e-12,39;UBERON:0006240,6.29e-12,39;UBERON:0000025,2.62e-10,114;UBERON:0004111,1.04e-09,122;UBERON:0003528,6.43e-09,29;UBERON:0002791,6.43e-09,29;UBERON:0001893,6.43e-09,29;UBERON:0000956,4.15e-07,21;UBERON:0001869,4.15e-07,21;UBERON:0000203,4.15e-07,21;UBERON:0003076,4.46e-07,12;UBERON:0003057,4.46e-07,12;UBERON:0000922,4.81e-07,320 | |||
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| |||
|short_description=p5@Ptprg | |||
}} |
Latest revision as of 17:26, 25 September 2015
Short description: | p5@Ptprg |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Ptprg_5end |
Coexpression cluster: | NA |
Association with transcript: | 121bp_to_ENSMUST00000148113_5end |
EntrezGene: | Ptprg |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 2.48e-09 | 44 |
neurectodermal cell | 2.48e-09 | 44 |
neural cell | 2.94e-09 | 43 |
electrically responsive cell | 6.38e-09 | 39 |
electrically active cell | 6.38e-09 | 39 |
neuron | 4.67e-08 | 33 |
neuronal stem cell | 4.67e-08 | 33 |
neuroblast | 4.67e-08 | 33 |
electrically signaling cell | 4.67e-08 | 33 |
CNS neuron (sensu Vertebrata) | 7.38e-08 | 23 |
neuroblast (sensu Vertebrata) | 7.38e-08 | 23 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 3.63e-23 | 73 |
nervous system | 2.27e-21 | 75 |
neurectoderm | 2.19e-19 | 64 |
neural plate | 2.19e-19 | 64 |
presumptive neural plate | 2.19e-19 | 64 |
ectoderm-derived structure | 3.69e-19 | 95 |
ectoderm | 3.69e-19 | 95 |
presumptive ectoderm | 3.69e-19 | 95 |
regional part of nervous system | 9.32e-19 | 54 |
neural tube | 1.48e-18 | 52 |
neural rod | 1.48e-18 | 52 |
future spinal cord | 1.48e-18 | 52 |
neural keel | 1.48e-18 | 52 |
ecto-epithelium | 1.85e-17 | 73 |
brain | 3.30e-15 | 47 |
future brain | 3.30e-15 | 47 |
structure with developmental contribution from neural crest | 9.70e-15 | 92 |
regional part of brain | 1.29e-14 | 46 |
pre-chordal neural plate | 3.29e-13 | 49 |
anterior neural tube | 1.66e-12 | 40 |
gray matter | 6.14e-12 | 34 |
regional part of forebrain | 6.29e-12 | 39 |
forebrain | 6.29e-12 | 39 |
future forebrain | 6.29e-12 | 39 |
tube | 2.62e-10 | 114 |
anatomical conduit | 1.04e-09 | 122 |
brain grey matter | 6.43e-09 | 29 |
regional part of telencephalon | 6.43e-09 | 29 |
telencephalon | 6.43e-09 | 29 |
cerebral cortex | 4.15e-07 | 21 |
cerebral hemisphere | 4.15e-07 | 21 |
pallium | 4.15e-07 | 21 |
posterior neural tube | 4.46e-07 | 12 |
chordal neural plate | 4.46e-07 | 12 |
embryo | 4.81e-07 | 320 |