FFCP PHASE1:Mm9::chr8:73993085..73993121,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=66498 | |EntrezGene=66498 | ||
|HGNC= | |HGNC= | ||
|TSSclassifier=NA | |||
|UniProt=Q9D9Z5,D3Z6F8,D3YXY5 | |UniProt=Q9D9Z5,D3Z6F8,D3YXY5 | ||
|association_with_transcript=0bp_to_ENSMUST00000098645,ENSMUST00000124745,ENSMUST00000127885,ENSMUST00000130098,ENSMUST00000135052,ENSMUST00000138892,ENSMUST00000139904,ENSMUST00000147642,ENSMUST00000147843,NM_025600,uc009mdi.2,uc009mdj.2,uc009mdk.2_5end | |association_with_transcript=0bp_to_ENSMUST00000098645,ENSMUST00000124745,ENSMUST00000127885,ENSMUST00000130098,ENSMUST00000135052,ENSMUST00000138892,ENSMUST00000139904,ENSMUST00000147642,ENSMUST00000147843,NM_025600,uc009mdi.2,uc009mdj.2,uc009mdk.2_5end | ||
|cluster_id=chr8:73993085..73993121,+ | |||
|description=CAGE_peak_1_at_Dda1_5end | |description=CAGE_peak_1_at_Dda1_5end | ||
|id=chr8:73993085..73993121,+ | |id=chr8:73993085..73993121,+ | ||
|ontology_enrichment_celltype=CL:0000055!8.15e-22!50;CL:0002371!2.73e-20!118;CL:0002319!5.18e-20!43;CL:0000221!6.62e-20!44;CL:0000133!6.62e-20!44;CL:0000548!1.04e-19!115;CL:0000004!1.04e-19!115;CL:0000255!1.04e-19!115;CL:0000144!6.82e-19!121;CL:0000012!6.82e-19!121;CL:0000393!1.93e-16!39;CL:0000211!1.93e-16!39;CL:0002321!7.57e-16!70;CL:0000220!7.57e-16!70;CL:0000540!9.01e-14!33;CL:0000047!9.01e-14!33;CL:0000031!9.01e-14!33;CL:0000404!9.01e-14!33;CL:0000034!2.56e-12!97;CL:0000723!3.05e-12!91;CL:0000048!3.05e-12!91;CL:0000117!3.62e-12!23;CL:0000337!3.62e-12!23;CL:0000333!2.38e-07!10;CL:0000095!2.38e-07!10;CL:0000243!2.38e-07!10;CL:0000123!2.38e-07!10;CL:0000125!2.38e-07!10;CL:0000030!2.38e-07!10;CL:0000339!2.38e-07!10 | |ontology_enrichment_celltype=CL:0000055!8.15e-22!50;CL:0002371!2.73e-20!118;CL:0002319!5.18e-20!43;CL:0000221!6.62e-20!44;CL:0000133!6.62e-20!44;CL:0000548!1.04e-19!115;CL:0000004!1.04e-19!115;CL:0000255!1.04e-19!115;CL:0000144!6.82e-19!121;CL:0000012!6.82e-19!121;CL:0000393!1.93e-16!39;CL:0000211!1.93e-16!39;CL:0002321!7.57e-16!70;CL:0000220!7.57e-16!70;CL:0000540!9.01e-14!33;CL:0000047!9.01e-14!33;CL:0000031!9.01e-14!33;CL:0000404!9.01e-14!33;CL:0000034!2.56e-12!97;CL:0000723!3.05e-12!91;CL:0000048!3.05e-12!91;CL:0000117!3.62e-12!23;CL:0000337!3.62e-12!23;CL:0000333!2.38e-07!10;CL:0000095!2.38e-07!10;CL:0000243!2.38e-07!10;CL:0000123!2.38e-07!10;CL:0000125!2.38e-07!10;CL:0000030!2.38e-07!10;CL:0000339!2.38e-07!10 | ||
|ontology_enrichment_celltype_v019_2=CL:0002319,5.18e-20,43;CL:0000221,6.62e-20,44;CL:0000133,6.62e-20,44;CL:0000393,1.93e-16,39;CL:0000211,1.93e-16,39;CL:0002321,7.57e-16,70;CL:0000540,9.01e-14,33;CL:0000047,9.01e-14,33;CL:0000031,9.01e-14,33;CL:0000404,9.01e-14,33;CL:0000034,2.56e-12,97;CL:0000723,3.05e-12,91;CL:0000048,3.05e-12,91;CL:0000117,3.62e-12,23;CL:0000337,3.62e-12,23;CL:0000333,2.38e-07,10;CL:0000095,2.38e-07,10;CL:0000243,2.38e-07,10;CL:0000123,2.38e-07,10;CL:0000125,2.38e-07,10;CL:0000030,2.38e-07,10;CL:0000339,2.38e-07,10 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!4.31e-27!75;UBERON:0001016!4.31e-27!75;UBERON:0001017!9.43e-26!73;UBERON:0005743!9.43e-26!73;UBERON:0004121!4.66e-19!102;UBERON:0000924!4.66e-19!102;UBERON:0006601!4.66e-19!102;UBERON:0001049!1.94e-17!52;UBERON:0005068!1.94e-17!52;UBERON:0006241!1.94e-17!52;UBERON:0007135!1.94e-17!52;UBERON:0000955!1.26e-15!50;UBERON:0006238!1.26e-15!50;UBERON:0002616!2.12e-15!49;UBERON:0002020!3.01e-15!34;UBERON:0002346!2.35e-13!71;UBERON:0003075!2.35e-13!71;UBERON:0007284!2.35e-13!71;UBERON:0002791!2.44e-12!29;UBERON:0003528!2.44e-12!29;UBERON:0001893!2.44e-12!29;UBERON:0003080!3.34e-12!40;UBERON:0007811!3.56e-12!86;UBERON:0002780!6.48e-12!39;UBERON:0001890!6.48e-12!39;UBERON:0006240!6.48e-12!39;UBERON:0000033!3.04e-11!63;UBERON:0000153!1.04e-09!94;UBERON:0000064!1.25e-09!99;UBERON:0003056!7.12e-09!49;UBERON:0000956!1.23e-08!21;UBERON:0001869!1.23e-08!21;UBERON:0000203!1.23e-08!21;UBERON:0002619!1.88e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,4.31e-27,75;UBERON:0001017,9.43e-26,73;UBERON:0004121,3.96e-20,95;UBERON:0000924,3.96e-20,95;UBERON:0006601,3.96e-20,95;UBERON:0000073,2.43e-18,54;UBERON:0001049,1.94e-17,52;UBERON:0005068,1.94e-17,52;UBERON:0006241,1.94e-17,52;UBERON:0007135,1.94e-17,52;UBERON:0002020,3.01e-15,34;UBERON:0002346,1.40e-14,64;UBERON:0003075,1.40e-14,64;UBERON:0007284,1.40e-14,64;UBERON:0000955,2.19e-14,47;UBERON:0006238,2.19e-14,47;UBERON:0002616,3.63e-14,46;UBERON:0010371,1.31e-12,73;UBERON:0003528,2.44e-12,29;UBERON:0002791,2.44e-12,29;UBERON:0001893,2.44e-12,29;UBERON:0003080,3.34e-12,40;UBERON:0002780,6.48e-12,39;UBERON:0001890,6.48e-12,39;UBERON:0006240,6.48e-12,39;UBERON:0010314,2.81e-09,92;UBERON:0003056,7.12e-09,49;UBERON:0000956,1.23e-08,21;UBERON:0001869,1.23e-08,21;UBERON:0000203,1.23e-08,21;UBERON:0002619,1.88e-07,17 | |||
|phase1_expression=46.4431656603902,62.4665979674456,63.699893514535,44.462239062104,51.5922601844738,39.7873874431179,44.6200143537454,58.7511121659172,80.3903603486017,91.0511007392555,62.4945584023093,69.5613226439334,53.7570291983986,76.6676929214607,38.3076226088012,48.3915889061684,73.4539972034554,50.1584842919598,45.5219919571053,46.2584720459853,60.2956927171085,46.9646199180187,41.5307664730907,63.9969691173627,53.6817717697178,66.6109078373423,58.1528694814751,49.7738547504404,60.8074942260396,40.3248207615889,62.0845429834853,68.5833127336402,59.0462196081187,158.481681015439,24.2635360591071,25.7663700305663,21.4377824075488,74.0800986404327,60.1628215283326,46.593613213668,83.528871300404,70.3536849507199,58.2612423637384,78.0560271448579,78.3643678326847,67.9122982998222,287.13762337573,126.236565544279,131.811709640683,124.240705508467,83.1519344454653,109.251948917378,57.884999089919,79.0644734792365,69.9075102216325,118.596600012572,90.5445670206471,114.99487657787,101.158230429799,121.667925232568,111.554327017088,196.868673132166,141.397872581671,138.134606602695,168.107281636386,132.859781494921,137.816050838466,161.755906540374,75.1749689236463,80.3285333073559,79.5028353908224,140.254633342268,148.423659519484,91.6231178127856,82.0437231916103,89.164222301172,104.610086949419,75.3355294702608,76.4960535616092,105.904689047346,116.18930737506,110.95454792859,97.9932326494847,88.3537297749737,75.7879308972978,107.244805112415,96.5279995817918,106.620483012072,116.315432959771,113.281768600071,38.2621125086215,36.9982267101996,25.1589393471868,43.1762553310254,29.2399387851451,35.8421509677868,46.6275474837416,71.2398748376281,71.7009372703918,78.0880459667852,51.5486916382651,68.0130330295885,117.210410265057,163.545341725266,53.4732871297699,58.5261289247478,52.5745422815375,43.3898742932428,52.3054524967287,50.6187694211052,49.2698328015826,44.7564253118848,44.0475599759072,45.0660695252341,39.8625717190039,44.3603067393754,66.742641288281,43.9582045036531,55.7304647728421,46.5888527848538,37.7638996567273,34.4261429726008,52.1896931410742,58.848940199321,55.712824012379,56.2005521458901,29.1150752549386,28.7953310876836,28.4637308643665,72.1990881931245,74.5725982594361,102.408296971984,63.9673498307577,62.650287045931,89.3488591606108,67.4923654361872,29.1260580611905,41.0543003013307,72.278708912031,40.1943944743165,38.3855306739976,44.8309103645272,43.7550975426999,36.1691562805716,41.910483477218,48.8113274285278,45.7264415851477,39.0642089815914,44.4070065441655,38.3885342740673,31.1433489770189,38.7976446396807,36.1461423993277,41.79025998266,38.2754773718775,32.2435512245959,24.5774615559632,30.1097051324217,38.6462359178006,40.8037771894939,42.2146907965973,39.7937155828843,43.5610313476787,35.4175617145327,31.3162239161378,35.1126256573116,36.2169091889486,33.044591889909,37.684205630187,40.5493636275365,43.9392947738538,45.760596064129,39.2994706370981,42.6776411657982,72.1294523574957,86.3369697862196,63.770825115873,53.6834650326995,36.8988673425955,38.0868141851119,38.7891058579501,39.3282873015518,43.8084746374395,56.1165597032049,44.1312027236396,48.9155895530312,35.6895996496383,46.3568579855881,46.5964168214697,50.3338868846364,39.1209870273197,45.6033515752501,58.4177134935492,34.2745537829186,39.4477074855781,32.1769097995597,29.0928730751439,34.997774125269,29.5314628370282,30.407690483798,30.9287493847508,33.0704399310425,34.9814099962836,36.3722330461085,38.722122037301,35.5282137568069,37.3262623354845,35.6942196433577,37.4300002118687,33.372751944294,37.1289669314831,29.6526326243128,33.0666875012915,31.6319805518228,28.7074659265396,31.0672019874947,21.1688947955856,38.5954817090694,52.8394123876489,42.2565848248181,36.6671196994558,33.4397818977121,32.6219445121018,42.0440706178958,38.3250261826482,44.6856053594359,40.8275023235035,46.286120136594,38.2691444777969,46.3733180645539,42.3078205571444,39.3445439341711,61.8244264151016,49.4954172275026,44.7505488447323,38.9070812289673,75.4587772942622,64.7008509988962,41.9673460164289,47.9694761688309,79.1925630734804,66.7650252747252,72.813108433686,61.6539498717584,59.4872459799992,53.5014643190893,84.200625948378,74.5252437673845,70.7565122524277,66.5135124993141,37.7560626653995,34.0105303004458,25.4103656591579,42.8922319728592,38.4960901185892,43.9432951440516,35.3718561648759,40.9273023070299,56.9932653259891,40.8888746765424,44.1912381317658,33.4451031119305,34.9367430817027,38.5564844681696,35.8423269154996,35.0660847043835,58.2151725838977,36.3723409943247,41.5241374942642,46.5111366018555,54.0887712608934,52.0836947398046,56.2757650459254,87.38144039589,82.604441238426,76.2595455109753,48.0751907759817,50.2903071471514,41.3348932341518,38.8415236537324,44.8840013451793,43.4973384324412,47.8028572072955,76.9515003343615,39.471173464304,40.6582129887548,29.8163189065236,37.4853229439335,35.9505818906296,44.1541874288589,35.5254918687158,36.807231961122,42.4273919579581,50.597542754801,40.8073431719665,3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| |phase1_expression=46.4431656603902,62.4665979674456,63.699893514535,44.462239062104,51.5922601844738,39.7873874431179,44.6200143537454,58.7511121659172,80.3903603486017,91.0511007392555,62.4945584023093,69.5613226439334,53.7570291983986,76.6676929214607,38.3076226088012,48.3915889061684,73.4539972034554,50.1584842919598,45.5219919571053,46.2584720459853,60.2956927171085,46.9646199180187,41.5307664730907,63.9969691173627,53.6817717697178,66.6109078373423,58.1528694814751,49.7738547504404,60.8074942260396,40.3248207615889,62.0845429834853,68.5833127336402,59.0462196081187,158.481681015439,24.2635360591071,25.7663700305663,21.4377824075488,74.0800986404327,60.1628215283326,46.593613213668,83.528871300404,70.3536849507199,58.2612423637384,78.0560271448579,78.3643678326847,67.9122982998222,287.13762337573,126.236565544279,131.811709640683,124.240705508467,83.1519344454653,109.251948917378,57.884999089919,79.0644734792365,69.9075102216325,118.596600012572,90.5445670206471,114.99487657787,101.158230429799,121.667925232568,111.554327017088,196.868673132166,141.397872581671,138.134606602695,168.107281636386,132.859781494921,137.816050838466,161.755906540374,75.1749689236463,80.3285333073559,79.5028353908224,140.254633342268,148.423659519484,91.6231178127856,82.0437231916103,89.164222301172,104.610086949419,75.3355294702608,76.4960535616092,105.904689047346,116.18930737506,110.95454792859,97.9932326494847,88.3537297749737,75.7879308972978,107.244805112415,96.5279995817918,106.620483012072,116.315432959771,113.281768600071,38.2621125086215,36.9982267101996,25.1589393471868,43.1762553310254,29.2399387851451,35.8421509677868,46.6275474837416,71.2398748376281,71.7009372703918,78.0880459667852,51.5486916382651,68.0130330295885,117.210410265057,163.545341725266,53.4732871297699,58.5261289247478,52.5745422815375,43.3898742932428,52.3054524967287,50.6187694211052,49.2698328015826,44.7564253118848,44.0475599759072,45.0660695252341,39.8625717190039,44.3603067393754,66.742641288281,43.9582045036531,55.7304647728421,46.5888527848538,37.7638996567273,34.4261429726008,52.1896931410742,58.848940199321,55.712824012379,56.2005521458901,29.1150752549386,28.7953310876836,28.4637308643665,72.1990881931245,74.5725982594361,102.408296971984,63.9673498307577,62.650287045931,89.3488591606108,67.4923654361872,29.1260580611905,41.0543003013307,72.278708912031,40.1943944743165,38.3855306739976,44.8309103645272,43.7550975426999,36.1691562805716,41.910483477218,48.8113274285278,45.7264415851477,39.0642089815914,44.4070065441655,38.3885342740673,31.1433489770189,38.7976446396807,36.1461423993277,41.79025998266,38.2754773718775,32.2435512245959,24.5774615559632,30.1097051324217,38.6462359178006,40.8037771894939,42.2146907965973,39.7937155828843,43.5610313476787,35.4175617145327,31.3162239161378,35.1126256573116,36.2169091889486,33.044591889909,37.684205630187,40.5493636275365,43.9392947738538,45.760596064129,39.2994706370981,42.6776411657982,72.1294523574957,86.3369697862196,63.770825115873,53.6834650326995,36.8988673425955,38.0868141851119,38.7891058579501,39.3282873015518,43.8084746374395,56.1165597032049,44.1312027236396,48.9155895530312,35.6895996496383,46.3568579855881,46.5964168214697,50.3338868846364,39.1209870273197,45.6033515752501,58.4177134935492,34.2745537829186,39.4477074855781,32.1769097995597,29.0928730751439,34.997774125269,29.5314628370282,30.407690483798,30.9287493847508,33.0704399310425,34.9814099962836,36.3722330461085,38.722122037301,35.5282137568069,37.3262623354845,35.6942196433577,37.4300002118687,33.372751944294,37.1289669314831,29.6526326243128,33.0666875012915,31.6319805518228,28.7074659265396,31.0672019874947,21.1688947955856,38.5954817090694,52.8394123876489,42.2565848248181,36.6671196994558,33.4397818977121,32.6219445121018,42.0440706178958,38.3250261826482,44.6856053594359,40.8275023235035,46.286120136594,38.2691444777969,46.3733180645539,42.3078205571444,39.3445439341711,61.8244264151016,49.4954172275026,44.7505488447323,38.9070812289673,75.4587772942622,64.7008509988962,41.9673460164289,47.9694761688309,79.1925630734804,66.7650252747252,72.813108433686,61.6539498717584,59.4872459799992,53.5014643190893,84.200625948378,74.5252437673845,70.7565122524277,66.5135124993141,37.7560626653995,34.0105303004458,25.4103656591579,42.8922319728592,38.4960901185892,43.9432951440516,35.3718561648759,40.9273023070299,56.9932653259891,40.8888746765424,44.1912381317658,33.4451031119305,34.9367430817027,38.5564844681696,35.8423269154996,35.0660847043835,58.2151725838977,36.3723409943247,41.5241374942642,46.5111366018555,54.0887712608934,52.0836947398046,56.2757650459254,87.38144039589,82.604441238426,76.2595455109753,48.0751907759817,50.2903071471514,41.3348932341518,38.8415236537324,44.8840013451793,43.4973384324412,47.8028572072955,76.9515003343615,39.471173464304,40.6582129887548,29.8163189065236,37.4853229439335,35.9505818906296,44.1541874288589,35.5254918687158,36.807231961122,42.4273919579581,50.597542754801,40.8073431719665,3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| ||
|short_description=p1@Dda1 | |short_description=p1@Dda1 | ||
}} | }} |
Latest revision as of 18:15, 25 September 2015
Short description: | p1@Dda1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Dda1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000098645, ENSMUST00000124745, ENSMUST00000127885, ENSMUST00000130098, ENSMUST00000135052, ENSMUST00000138892, ENSMUST00000139904, ENSMUST00000147642, ENSMUST00000147843, NM_025600, uc009mdi.2, uc009mdj.2, uc009mdk.2_5end |
EntrezGene: | Dda1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 5.18e-20 | 43 |
ectodermal cell | 6.62e-20 | 44 |
neurectodermal cell | 6.62e-20 | 44 |
electrically responsive cell | 1.93e-16 | 39 |
electrically active cell | 1.93e-16 | 39 |
embryonic cell | 7.57e-16 | 70 |
neuron | 9.01e-14 | 33 |
neuronal stem cell | 9.01e-14 | 33 |
neuroblast | 9.01e-14 | 33 |
electrically signaling cell | 9.01e-14 | 33 |
stem cell | 2.56e-12 | 97 |
somatic stem cell | 3.05e-12 | 91 |
multi fate stem cell | 3.05e-12 | 91 |
CNS neuron (sensu Vertebrata) | 3.62e-12 | 23 |
neuroblast (sensu Vertebrata) | 3.62e-12 | 23 |
migratory neural crest cell | 2.38e-07 | 10 |
neuron associated cell | 2.38e-07 | 10 |
glial cell (sensu Vertebrata) | 2.38e-07 | 10 |
neuron associated cell (sensu Vertebrata) | 2.38e-07 | 10 |
glial cell | 2.38e-07 | 10 |
glioblast | 2.38e-07 | 10 |
glioblast (sensu Vertebrata) | 2.38e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
nervous system | 4.31e-27 | 75 |
central nervous system | 9.43e-26 | 73 |
ectoderm-derived structure | 3.96e-20 | 95 |
ectoderm | 3.96e-20 | 95 |
presumptive ectoderm | 3.96e-20 | 95 |
regional part of nervous system | 2.43e-18 | 54 |
neural tube | 1.94e-17 | 52 |
neural rod | 1.94e-17 | 52 |
future spinal cord | 1.94e-17 | 52 |
neural keel | 1.94e-17 | 52 |
gray matter | 3.01e-15 | 34 |
neurectoderm | 1.40e-14 | 64 |
neural plate | 1.40e-14 | 64 |
presumptive neural plate | 1.40e-14 | 64 |
brain | 2.19e-14 | 47 |
future brain | 2.19e-14 | 47 |
regional part of brain | 3.63e-14 | 46 |
ecto-epithelium | 1.31e-12 | 73 |
brain grey matter | 2.44e-12 | 29 |
regional part of telencephalon | 2.44e-12 | 29 |
telencephalon | 2.44e-12 | 29 |
anterior neural tube | 3.34e-12 | 40 |
regional part of forebrain | 6.48e-12 | 39 |
forebrain | 6.48e-12 | 39 |
future forebrain | 6.48e-12 | 39 |
structure with developmental contribution from neural crest | 2.81e-09 | 92 |
pre-chordal neural plate | 7.12e-09 | 49 |
cerebral cortex | 1.23e-08 | 21 |
cerebral hemisphere | 1.23e-08 | 21 |
pallium | 1.23e-08 | 21 |
regional part of cerebral cortex | 1.88e-07 | 17 |