FFCP PHASE1:Mm9::chr5:45911521..45911566,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=66999 | |EntrezGene=66999 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1280 | |||
|TSSclassifier=NA | |||
|UniProt=D3Z7D6,D3YWT4 | |UniProt=D3Z7D6,D3YWT4 | ||
|association_with_transcript=0bp_to_ENSMUST00000118833,ENSMUST00000119579_5end | |association_with_transcript=0bp_to_ENSMUST00000118833,ENSMUST00000119579_5end | ||
|cluster_id=chr5:45911521..45911566,+ | |||
|description=CAGE_peak_1_at_Med28_5end | |description=CAGE_peak_1_at_Med28_5end | ||
|id=chr5:45911521..45911566,+ | |id=chr5:45911521..45911566,+ | ||
|ontology_enrichment_celltype=CL:0002371!9.51e-30!118;CL:0000144!3.32e-29!121;CL:0000012!3.32e-29!121;CL:0000548!8.58e-29!115;CL:0000004!8.58e-29!115;CL:0000255!8.58e-29!115;CL:0000723!1.56e-24!91;CL:0000048!1.56e-24!91;CL:0000034!3.92e-23!97;CL:0000055!1.35e-20!50;CL:0000221!6.46e-19!44;CL:0000133!6.46e-19!44;CL:0002319!9.39e-19!43;CL:0002321!5.80e-18!70;CL:0000220!5.80e-18!70;CL:0000393!8.41e-15!39;CL:0000211!8.41e-15!39;CL:0000540!1.77e-13!33;CL:0000047!1.77e-13!33;CL:0000031!1.77e-13!33;CL:0000404!1.77e-13!33;CL:0000117!1.07e-11!23;CL:0000337!1.07e-11!23;CL:0000219!3.48e-11!54;CL:0000063!9.07e-10!66;CL:0002320!7.32e-08!46;CL:0000134!7.32e-08!46 | |ontology_enrichment_celltype=CL:0002371!9.51e-30!118;CL:0000144!3.32e-29!121;CL:0000012!3.32e-29!121;CL:0000548!8.58e-29!115;CL:0000004!8.58e-29!115;CL:0000255!8.58e-29!115;CL:0000723!1.56e-24!91;CL:0000048!1.56e-24!91;CL:0000034!3.92e-23!97;CL:0000055!1.35e-20!50;CL:0000221!6.46e-19!44;CL:0000133!6.46e-19!44;CL:0002319!9.39e-19!43;CL:0002321!5.80e-18!70;CL:0000220!5.80e-18!70;CL:0000393!8.41e-15!39;CL:0000211!8.41e-15!39;CL:0000540!1.77e-13!33;CL:0000047!1.77e-13!33;CL:0000031!1.77e-13!33;CL:0000404!1.77e-13!33;CL:0000117!1.07e-11!23;CL:0000337!1.07e-11!23;CL:0000219!3.48e-11!54;CL:0000063!9.07e-10!66;CL:0002320!7.32e-08!46;CL:0000134!7.32e-08!46 | ||
|ontology_enrichment_celltype_v019_2=CL:0000723,1.56e-24,91;CL:0000048,1.56e-24,91;CL:0000034,3.92e-23,97;CL:0000221,6.46e-19,44;CL:0000133,6.46e-19,44;CL:0002319,9.39e-19,43;CL:0002321,5.80e-18,70;CL:0000393,8.41e-15,39;CL:0000211,8.41e-15,39;CL:0000540,1.77e-13,33;CL:0000047,1.77e-13,33;CL:0000031,1.77e-13,33;CL:0000404,1.77e-13,33;CL:0000117,1.07e-11,23;CL:0000337,1.07e-11,23;CL:0000219,3.48e-11,54;CL:0002320,7.32e-08,46;CL:0000134,7.32e-08,46 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!8.75e-23!75;UBERON:0001016!8.75e-23!75;UBERON:0001017!2.72e-22!73;UBERON:0005743!2.72e-22!73;UBERON:0001049!3.18e-14!52;UBERON:0005068!3.18e-14!52;UBERON:0006241!3.18e-14!52;UBERON:0007135!3.18e-14!52;UBERON:0000955!6.94e-14!50;UBERON:0006238!6.94e-14!50;UBERON:0002616!7.59e-14!49;UBERON:0004121!1.25e-12!102;UBERON:0000924!1.25e-12!102;UBERON:0006601!1.25e-12!102;UBERON:0002020!2.46e-12!34;UBERON:0002346!1.34e-11!71;UBERON:0003075!1.34e-11!71;UBERON:0007284!1.34e-11!71;UBERON:0003080!1.42e-11!40;UBERON:0002780!2.17e-11!39;UBERON:0001890!2.17e-11!39;UBERON:0006240!2.17e-11!39;UBERON:0002791!8.35e-11!29;UBERON:0003528!8.35e-11!29;UBERON:0001893!8.35e-11!29;UBERON:0000033!8.85e-11!63;UBERON:0003056!8.08e-09!49;UBERON:0002384!7.32e-08!46;UBERON:0000956!1.49e-07!21;UBERON:0001869!1.49e-07!21;UBERON:0000203!1.49e-07!21 | |ontology_enrichment_uberon=UBERON:0000073!8.75e-23!75;UBERON:0001016!8.75e-23!75;UBERON:0001017!2.72e-22!73;UBERON:0005743!2.72e-22!73;UBERON:0001049!3.18e-14!52;UBERON:0005068!3.18e-14!52;UBERON:0006241!3.18e-14!52;UBERON:0007135!3.18e-14!52;UBERON:0000955!6.94e-14!50;UBERON:0006238!6.94e-14!50;UBERON:0002616!7.59e-14!49;UBERON:0004121!1.25e-12!102;UBERON:0000924!1.25e-12!102;UBERON:0006601!1.25e-12!102;UBERON:0002020!2.46e-12!34;UBERON:0002346!1.34e-11!71;UBERON:0003075!1.34e-11!71;UBERON:0007284!1.34e-11!71;UBERON:0003080!1.42e-11!40;UBERON:0002780!2.17e-11!39;UBERON:0001890!2.17e-11!39;UBERON:0006240!2.17e-11!39;UBERON:0002791!8.35e-11!29;UBERON:0003528!8.35e-11!29;UBERON:0001893!8.35e-11!29;UBERON:0000033!8.85e-11!63;UBERON:0003056!8.08e-09!49;UBERON:0002384!7.32e-08!46;UBERON:0000956!1.49e-07!21;UBERON:0001869!1.49e-07!21;UBERON:0000203!1.49e-07!21 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,8.75e-23,75;UBERON:0001017,2.72e-22,73;UBERON:0000073,1.68e-15,54;UBERON:0001049,3.18e-14,52;UBERON:0005068,3.18e-14,52;UBERON:0006241,3.18e-14,52;UBERON:0007135,3.18e-14,52;UBERON:0004121,3.57e-13,95;UBERON:0000924,3.57e-13,95;UBERON:0006601,3.57e-13,95;UBERON:0000955,1.43e-12,47;UBERON:0006238,1.43e-12,47;UBERON:0002616,1.56e-12,46;UBERON:0002346,1.84e-12,64;UBERON:0003075,1.84e-12,64;UBERON:0007284,1.84e-12,64;UBERON:0002020,2.46e-12,34;UBERON:0003080,1.42e-11,40;UBERON:0002780,2.17e-11,39;UBERON:0001890,2.17e-11,39;UBERON:0006240,2.17e-11,39;UBERON:0003528,8.35e-11,29;UBERON:0002791,8.35e-11,29;UBERON:0001893,8.35e-11,29;UBERON:0003056,8.08e-09,49;UBERON:0010314,1.08e-08,92;UBERON:0010371,4.99e-08,73;UBERON:0002384,7.32e-08,46;UBERON:0000956,1.49e-07,21;UBERON:0001869,1.49e-07,21;UBERON:0000203,1.49e-07,21 | |||
|phase1_expression=56.6926918750971,57.9299176681339,65.5198904720932,26.0119221723874,37.567179745976,51.5389364769502,58.8703854300725,81.4768170916346,62.51019263534,67.8787126333781,72.9388544640651,67.2479300330686,65.0562773738582,79.5525662012876,46.3022568923771,39.2802018736262,39.8750270533044,61.9883154928937,55.3942311767185,71.2974615020691,90.8262338813425,53.4185317460763,63.2103489716224,64.6369388085363,70.8874678497555,88.4317224737131,77.9679213047925,63.5640136423373,87.410772949932,83.9260332100569,83.1489414957393,66.6782207132613,49.8202477943502,47.5445043046316,60.6588401477677,81.7874455163782,66.5592101415323,54.409111995798,85.9468878976181,48.6877081895632,68.2348526115977,65.5723665560108,66.0294080122369,55.0169094553273,57.9876046575623,60.9375217176783,128.312180473078,115.771358038017,101.275330240592,110.630612573267,73.35288493169,109.251948917378,55.8716078172262,50.0499877987828,44.7004752859477,59.1696702882678,63.3238902264652,78.8978301184487,89.6261921608018,86.2255296213414,107.75133859605,127.066699525925,92.4866587955585,167.38134741434,131.519226221408,169.094267357172,115.645642660104,112.191745153894,70.0941779205309,83.9736936423116,88.3364837675804,80.2679266174688,63.6101397940647,89.6632650253463,70.7339576114584,117.660004686083,84.7892283695293,73.1648447228126,71.1198248976407,95.3537860289301,78.4049105672651,82.8252259185248,111.394016601551,110.864234176241,77.4687116228427,56.5686884109442,61.2198227436143,78.8469655841022,66.2604191665361,53.0512351949634,53.045201432407,71.4151817894551,33.3185953516798,46.9541776724901,33.1385972898311,29.1217476613268,44.2399923415018,38.5172529026411,75.0781553302291,73.4946314981508,59.0133928864291,30.7983545794363,33.1246811618639,7.11066703153331,72.9574808207792,68.1538038128015,90.994400102661,50.0125393169483,27.188477782953,42.3060096334751,42.6773903844694,35.0135300058962,44.0475599759072,49.4370261012602,29.6323541981976,48.5073042532547,34.360100515078,23.2804964641058,31.8459798701955,27.5003644910596,27.8260313260096,26.6681389224372,35.4144346314432,46.552146724836,39.3759808809296,34.4867024531598,39.6588062114596,58.1905649063605,50.1927396938606,59.0175119255001,62.2200819833332,50.7643582535972,61.1861607076813,53.1888151247088,60.466320966832,46.5632425004464,31.6720421574484,33.5898820647251,100.836380615036,22.0963948680798,37.7349284591841,66.6716102857071,44.4753460619213,38.2790237302716,32.9296655892427,34.4625907566246,40.8539519080418,26.6464471861186,51.0896143250836,36.4974734723891,37.4775894469211,44.9351251476528,26.4144886764318,25.7706603226403,27.1632420058485,50.1566352382603,22.4708219940235,42.9771004881574,45.7503234026904,35.8327586486418,34.4753308172211,41.0541500131114,30.3033261549069,32.4660982383216,37.1783742058582,36.0427614363132,41.0458304141417,27.2063247715505,30.4435722339939,31.3559856391072,24.5638492923943,35.9651969066318,37.5430697147697,34.4910496214155,55.0959665238013,34.9875682089567,38.3285788261206,30.6762657329711,46.0702621156105,38.5512875288328,32.6034677144896,31.0592627919947,30.6881700505921,38.9962533530746,36.0642086773829,37.8807595865225,39.4596277816423,32.8278178867899,39.9676378594196,26.0657628509724,37.1757445784474,33.057451360225,53.1070122668629,43.9856773547456,45.0830942692322,41.9521735361347,47.1304543817331,39.3461949584687,33.4521281387321,35.7216558110637,55.7345483836881,65.6472912063979,29.0523574545406,27.6962875488716,34.7909421350369,27.4331777109522,28.4004169943904,29.9059678092997,31.5736056208961,25.0295639582205,15.0785760900783,30.476316863877,12.9391385874619,20.4677521217677,31.8278426576852,22.9846778931872,27.2684068553307,26.5343936749852,44.3407656399851,51.7311554133423,34.5485750057095,36.3254483558903,37.5504397261603,33.8362640032468,28.5652369063216,28.099245291523,24.2758121923534,27.9045508957456,31.8909537314974,39.9826487906401,39.5448608472901,39.0552458170081,67.8560777726725,119.115344756297,24.0964493779328,18.4877620024171,56.5138076757028,43.7199590988918,34.7542084198552,33.5786333181816,70.042824710409,78.4781876036243,59.6722811719853,59.5032306901855,51.2436950389506,55.4830000346112,61.9360373562588,62.8350094509321,57.3167278022459,50.7687679946455,35.4850213020672,43.8041385021448,34.6949223423117,33.8188752093698,21.2392221343941,42.7293919632767,44.1392393168537,31.497048319235,27.4630760379119,31.0509499423367,32.8203932323641,31.2639007350655,32.0847640546249,16.7499481705982,31.6255825724996,36.0974401368654,61.6195686414356,50.5971674227982,53.2957777184949,64.9441216145725,51.2513275226171,51.1918506517943,51.5038434484639,42.3206279269293,30.2726503402186,32.6221389130283,67.0406330087084,20.4458953647435,15.5005849628069,18.7573196526565,25.0681922406587,20.3534715683876,29.4395644996149,51.5482339589217,36.0537558483469,35.9113150256007,27.7791791054568,28.2552685507037,22.9646302571322,33.8591696345653,37.3952545986482,40.5859211738608,37.8667928224121,37.2321541025894,37.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|phase1_expression=56.6926918750971,57.9299176681339,65.5198904720932,26.0119221723874,37.567179745976,51.5389364769502,58.8703854300725,81.4768170916346,62.51019263534,67.8787126333781,72.9388544640651,67.2479300330686,65.0562773738582,79.5525662012876,46.3022568923771,39.2802018736262,39.8750270533044,61.9883154928937,55.3942311767185,71.2974615020691,90.8262338813425,53.4185317460763,63.2103489716224,64.6369388085363,70.8874678497555,88.4317224737131,77.9679213047925,63.5640136423373,87.410772949932,83.9260332100569,83.1489414957393,66.6782207132613,49.8202477943502,47.5445043046316,60.6588401477677,81.7874455163782,66.5592101415323,54.409111995798,85.9468878976181,48.6877081895632,68.2348526115977,65.5723665560108,66.0294080122369,55.0169094553273,57.9876046575623,60.9375217176783,128.312180473078,115.771358038017,101.275330240592,110.630612573267,73.35288493169,109.251948917378,55.8716078172262,50.0499877987828,44.7004752859477,59.1696702882678,63.3238902264652,78.8978301184487,89.6261921608018,86.2255296213414,107.75133859605,127.066699525925,92.4866587955585,167.38134741434,131.519226221408,169.094267357172,115.645642660104,112.191745153894,70.0941779205309,83.9736936423116,88.3364837675804,80.2679266174688,63.6101397940647,89.6632650253463,70.7339576114584,117.660004686083,84.7892283695293,73.1648447228126,71.1198248976407,95.3537860289301,78.4049105672651,82.8252259185248,111.394016601551,110.864234176241,77.4687116228427,56.5686884109442,61.2198227436143,78.8469655841022,66.2604191665361,53.0512351949634,53.045201432407,71.4151817894551,33.3185953516798,46.9541776724901,33.1385972898311,29.1217476613268,44.2399923415018,38.5172529026411,75.0781553302291,73.4946314981508,59.0133928864291,30.7983545794363,33.1246811618639,7.11066703153331,72.9574808207792,68.1538038128015,90.994400102661,50.0125393169483,27.188477782953,42.3060096334751,42.6773903844694,35.0135300058962,44.0475599759072,49.4370261012602,29.6323541981976,48.5073042532547,34.360100515078,23.2804964641058,31.8459798701955,27.5003644910596,27.8260313260096,26.6681389224372,35.4144346314432,46.552146724836,39.3759808809296,34.4867024531598,39.6588062114596,58.1905649063605,50.1927396938606,59.0175119255001,62.2200819833332,50.7643582535972,61.1861607076813,53.1888151247088,60.466320966832,46.5632425004464,31.6720421574484,33.5898820647251,100.836380615036,22.0963948680798,37.7349284591841,66.6716102857071,44.4753460619213,38.2790237302716,32.9296655892427,34.4625907566246,40.8539519080418,26.6464471861186,51.0896143250836,36.4974734723891,37.4775894469211,44.9351251476528,26.4144886764318,25.7706603226403,27.1632420058485,50.1566352382603,22.4708219940235,42.9771004881574,45.7503234026904,35.8327586486418,34.4753308172211,41.0541500131114,30.3033261549069,32.4660982383216,37.1783742058582,36.0427614363132,41.0458304141417,27.2063247715505,30.4435722339939,31.3559856391072,24.5638492923943,35.9651969066318,37.5430697147697,34.4910496214155,55.0959665238013,34.9875682089567,38.3285788261206,30.6762657329711,46.0702621156105,38.5512875288328,32.6034677144896,31.0592627919947,30.6881700505921,38.9962533530746,36.0642086773829,37.8807595865225,39.4596277816423,32.8278178867899,39.9676378594196,26.0657628509724,37.1757445784474,33.057451360225,53.1070122668629,43.9856773547456,45.0830942692322,41.9521735361347,47.1304543817331,39.3461949584687,33.4521281387321,35.7216558110637,55.7345483836881,65.6472912063979,29.0523574545406,27.6962875488716,34.7909421350369,27.4331777109522,28.4004169943904,29.9059678092997,31.5736056208961,25.0295639582205,15.0785760900783,30.476316863877,12.9391385874619,20.4677521217677,31.8278426576852,22.9846778931872,27.2684068553307,26.5343936749852,44.3407656399851,51.7311554133423,34.5485750057095,36.3254483558903,37.5504397261603,33.8362640032468,28.5652369063216,28.099245291523,24.2758121923534,27.9045508957456,31.8909537314974,39.9826487906401,39.5448608472901,39.0552458170081,67.8560777726725,119.115344756297,24.0964493779328,18.4877620024171,56.5138076757028,43.7199590988918,34.7542084198552,33.5786333181816,70.042824710409,78.4781876036243,59.6722811719853,59.5032306901855,51.2436950389506,55.4830000346112,61.9360373562588,62.8350094509321,57.3167278022459,50.7687679946455,35.4850213020672,43.8041385021448,34.6949223423117,33.8188752093698,21.2392221343941,42.7293919632767,44.1392393168537,31.497048319235,27.4630760379119,31.0509499423367,32.8203932323641,31.2639007350655,32.0847640546249,16.7499481705982,31.6255825724996,36.0974401368654,61.6195686414356,50.5971674227982,53.2957777184949,64.9441216145725,51.2513275226171,51.1918506517943,51.5038434484639,42.3206279269293,30.2726503402186,32.6221389130283,67.0406330087084,20.4458953647435,15.5005849628069,18.7573196526565,25.0681922406587,20.3534715683876,29.4395644996149,51.5482339589217,36.0537558483469,35.9113150256007,27.7791791054568,28.2552685507037,22.9646302571322,33.8591696345653,37.3952545986482,40.5859211738608,37.8667928224121,37.2321541025894,37.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| ||
|short_description=p1@Med28 | |short_description=p1@Med28 | ||
}} | }} |
Latest revision as of 01:22, 26 September 2015
Short description: | p1@Med28 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Med28_5end |
Coexpression cluster: | MCL_coexpression_mm9:1280 |
Association with transcript: | 0bp_to_ENSMUST00000118833, ENSMUST00000119579_5end |
EntrezGene: | Med28 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
somatic stem cell | 1.56e-24 | 91 |
multi fate stem cell | 1.56e-24 | 91 |
stem cell | 3.92e-23 | 97 |
ectodermal cell | 6.46e-19 | 44 |
neurectodermal cell | 6.46e-19 | 44 |
neural cell | 9.39e-19 | 43 |
embryonic cell | 5.80e-18 | 70 |
electrically responsive cell | 8.41e-15 | 39 |
electrically active cell | 8.41e-15 | 39 |
neuron | 1.77e-13 | 33 |
neuronal stem cell | 1.77e-13 | 33 |
neuroblast | 1.77e-13 | 33 |
electrically signaling cell | 1.77e-13 | 33 |
CNS neuron (sensu Vertebrata) | 1.07e-11 | 23 |
neuroblast (sensu Vertebrata) | 1.07e-11 | 23 |
motile cell | 3.48e-11 | 54 |
connective tissue cell | 7.32e-08 | 46 |
mesenchymal cell | 7.32e-08 | 46 |
Ontology term | p-value | n |
---|---|---|
nervous system | 8.75e-23 | 75 |
central nervous system | 2.72e-22 | 73 |
regional part of nervous system | 1.68e-15 | 54 |
neural tube | 3.18e-14 | 52 |
neural rod | 3.18e-14 | 52 |
future spinal cord | 3.18e-14 | 52 |
neural keel | 3.18e-14 | 52 |
ectoderm-derived structure | 3.57e-13 | 95 |
ectoderm | 3.57e-13 | 95 |
presumptive ectoderm | 3.57e-13 | 95 |
brain | 1.43e-12 | 47 |
future brain | 1.43e-12 | 47 |
regional part of brain | 1.56e-12 | 46 |
neurectoderm | 1.84e-12 | 64 |
neural plate | 1.84e-12 | 64 |
presumptive neural plate | 1.84e-12 | 64 |
gray matter | 2.46e-12 | 34 |
anterior neural tube | 1.42e-11 | 40 |
regional part of forebrain | 2.17e-11 | 39 |
forebrain | 2.17e-11 | 39 |
future forebrain | 2.17e-11 | 39 |
brain grey matter | 8.35e-11 | 29 |
regional part of telencephalon | 8.35e-11 | 29 |
telencephalon | 8.35e-11 | 29 |
pre-chordal neural plate | 8.08e-09 | 49 |
structure with developmental contribution from neural crest | 1.08e-08 | 92 |
ecto-epithelium | 4.99e-08 | 73 |
connective tissue | 7.32e-08 | 46 |
cerebral cortex | 1.49e-07 | 21 |
cerebral hemisphere | 1.49e-07 | 21 |
pallium | 1.49e-07 | 21 |