FFCP PHASE1:Mm9::chr17:27760386..27760440,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=56409 | |EntrezGene=56409 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=60 | |||
|TSSclassifier=NA | |||
|UniProt=Q9JI46 | |UniProt=Q9JI46 | ||
|association_with_transcript=0bp_to_ENSMUST00000025050,ENSMUST00000062397,NM_019837,uc008bpg.1_5end | |association_with_transcript=0bp_to_ENSMUST00000025050,ENSMUST00000062397,NM_019837,uc008bpg.1_5end | ||
|cluster_id=chr17:27760386..27760440,- | |||
|description=CAGE_peak_1_at_Nudt3_5end | |description=CAGE_peak_1_at_Nudt3_5end | ||
|id=chr17:27760386..27760440,- | |id=chr17:27760386..27760440,- | ||
|ontology_enrichment_celltype=CL:0002319!7.77e-15!43;CL:0000221!8.87e-15!44;CL:0000133!8.87e-15!44;CL:0000540!1.42e-14!33;CL:0000047!1.42e-14!33;CL:0000031!1.42e-14!33;CL:0000404!1.42e-14!33;CL:0000117!8.96e-14!23;CL:0000337!8.96e-14!23;CL:0000393!7.39e-10!39;CL:0000211!7.39e-10!39;CL:0000055!8.13e-10!50;CL:0002321!9.86e-08!70;CL:0000220!9.86e-08!70 | |ontology_enrichment_celltype=CL:0002319!7.77e-15!43;CL:0000221!8.87e-15!44;CL:0000133!8.87e-15!44;CL:0000540!1.42e-14!33;CL:0000047!1.42e-14!33;CL:0000031!1.42e-14!33;CL:0000404!1.42e-14!33;CL:0000117!8.96e-14!23;CL:0000337!8.96e-14!23;CL:0000393!7.39e-10!39;CL:0000211!7.39e-10!39;CL:0000055!8.13e-10!50;CL:0002321!9.86e-08!70;CL:0000220!9.86e-08!70 | ||
|ontology_enrichment_celltype_v019_2=CL:0002319,7.77e-15,43;CL:0000221,8.87e-15,44;CL:0000133,8.87e-15,44;CL:0000540,1.42e-14,33;CL:0000047,1.42e-14,33;CL:0000031,1.42e-14,33;CL:0000404,1.42e-14,33;CL:0000117,8.96e-14,23;CL:0000337,8.96e-14,23;CL:0000393,7.39e-10,39;CL:0000211,7.39e-10,39;CL:0002321,9.86e-08,70 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.05e-27!73;UBERON:0005743!1.05e-27!73;UBERON:0000073!4.05e-27!75;UBERON:0001016!4.05e-27!75;UBERON:0004121!7.34e-22!102;UBERON:0000924!7.34e-22!102;UBERON:0006601!7.34e-22!102;UBERON:0001049!9.23e-21!52;UBERON:0005068!9.23e-21!52;UBERON:0006241!9.23e-21!52;UBERON:0007135!9.23e-21!52;UBERON:0000955!1.72e-19!50;UBERON:0006238!1.72e-19!50;UBERON:0002346!2.20e-19!71;UBERON:0003075!2.20e-19!71;UBERON:0007284!2.20e-19!71;UBERON:0002616!3.86e-19!49;UBERON:0000033!1.20e-18!63;UBERON:0002020!1.68e-16!34;UBERON:0003056!1.98e-14!49;UBERON:0003080!2.33e-14!40;UBERON:0002791!5.53e-14!29;UBERON:0003528!5.53e-14!29;UBERON:0001893!5.53e-14!29;UBERON:0002780!7.73e-14!39;UBERON:0001890!7.73e-14!39;UBERON:0006240!7.73e-14!39;UBERON:0007811!1.28e-11!86;UBERON:0000153!4.03e-10!94;UBERON:0000956!8.25e-10!21;UBERON:0001869!8.25e-10!21;UBERON:0000203!8.25e-10!21;UBERON:0002619!1.39e-07!17;UBERON:0003076!2.89e-07!12;UBERON:0003057!2.89e-07!12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.05e-27,73;UBERON:0001016,4.05e-27,75;UBERON:0004121,1.61e-23,95;UBERON:0000924,1.61e-23,95;UBERON:0006601,1.61e-23,95;UBERON:0010314,7.87e-22,92;UBERON:0000073,7.94e-22,54;UBERON:0002346,1.18e-21,64;UBERON:0003075,1.18e-21,64;UBERON:0007284,1.18e-21,64;UBERON:0001049,9.23e-21,52;UBERON:0005068,9.23e-21,52;UBERON:0006241,9.23e-21,52;UBERON:0007135,9.23e-21,52;UBERON:0010371,1.05e-18,73;UBERON:0000955,9.49e-18,47;UBERON:0006238,9.49e-18,47;UBERON:0002616,2.09e-17,46;UBERON:0002020,1.68e-16,34;UBERON:0003056,1.98e-14,49;UBERON:0003080,2.33e-14,40;UBERON:0003528,5.53e-14,29;UBERON:0002791,5.53e-14,29;UBERON:0001893,5.53e-14,29;UBERON:0002780,7.73e-14,39;UBERON:0001890,7.73e-14,39;UBERON:0006240,7.73e-14,39;UBERON:0000956,8.25e-10,21;UBERON:0001869,8.25e-10,21;UBERON:0000203,8.25e-10,21;UBERON:0002619,1.39e-07,17;UBERON:0003076,2.89e-07,12;UBERON:0003057,2.89e-07,12 | |||
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| ||
|short_description=p1@Nudt3 | |short_description=p1@Nudt3 | ||
}} | }} |
Latest revision as of 03:44, 26 September 2015
Short description: | p1@Nudt3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Nudt3_5end |
Coexpression cluster: | MCL_coexpression_mm9:60 |
Association with transcript: | 0bp_to_ENSMUST00000025050, ENSMUST00000062397, NM_019837, uc008bpg.1_5end |
EntrezGene: | Nudt3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 7.77e-15 | 43 |
ectodermal cell | 8.87e-15 | 44 |
neurectodermal cell | 8.87e-15 | 44 |
neuron | 1.42e-14 | 33 |
neuronal stem cell | 1.42e-14 | 33 |
neuroblast | 1.42e-14 | 33 |
electrically signaling cell | 1.42e-14 | 33 |
CNS neuron (sensu Vertebrata) | 8.96e-14 | 23 |
neuroblast (sensu Vertebrata) | 8.96e-14 | 23 |
electrically responsive cell | 7.39e-10 | 39 |
electrically active cell | 7.39e-10 | 39 |
embryonic cell | 9.86e-08 | 70 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.05e-27 | 73 |
nervous system | 4.05e-27 | 75 |
ectoderm-derived structure | 1.61e-23 | 95 |
ectoderm | 1.61e-23 | 95 |
presumptive ectoderm | 1.61e-23 | 95 |
structure with developmental contribution from neural crest | 7.87e-22 | 92 |
regional part of nervous system | 7.94e-22 | 54 |
neurectoderm | 1.18e-21 | 64 |
neural plate | 1.18e-21 | 64 |
presumptive neural plate | 1.18e-21 | 64 |
neural tube | 9.23e-21 | 52 |
neural rod | 9.23e-21 | 52 |
future spinal cord | 9.23e-21 | 52 |
neural keel | 9.23e-21 | 52 |
ecto-epithelium | 1.05e-18 | 73 |
brain | 9.49e-18 | 47 |
future brain | 9.49e-18 | 47 |
regional part of brain | 2.09e-17 | 46 |
gray matter | 1.68e-16 | 34 |
pre-chordal neural plate | 1.98e-14 | 49 |
anterior neural tube | 2.33e-14 | 40 |
brain grey matter | 5.53e-14 | 29 |
regional part of telencephalon | 5.53e-14 | 29 |
telencephalon | 5.53e-14 | 29 |
regional part of forebrain | 7.73e-14 | 39 |
forebrain | 7.73e-14 | 39 |
future forebrain | 7.73e-14 | 39 |
cerebral cortex | 8.25e-10 | 21 |
cerebral hemisphere | 8.25e-10 | 21 |
pallium | 8.25e-10 | 21 |
regional part of cerebral cortex | 1.39e-07 | 17 |
posterior neural tube | 2.89e-07 | 12 |
chordal neural plate | 2.89e-07 | 12 |