FFCP PHASE1:Mm9::chr19:7557689..7557700,-: Difference between revisions
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{{FFCP|EntrezGene=20168|HGNC=|MCL_coexpression_id=1|UniProt=Q9ES97|association_with_transcript=70bp_to_ENSMUST00000025667,NM_053076_5end|description=CAGE_peak_4_at_Rtn3_5end|id=chr19:7557689..7557700,-|ontology_enrichment_celltype=CL:0000055!2.94e-17!50;CL:0002319!1.13e-16!43;CL:0000221!1.15e-16!44;CL:0000133!1.15e-16!44;CL:0000393!4.34e-14!39;CL:0000211!4.34e-14!39;CL:0000540!2.72e-13!33;CL:0000047!2.72e-13!33;CL:0000031!2.72e-13!33;CL:0000404!2.72e-13!33;CL:0000117!3.79e-13!23;CL:0000337!3.79e-13!23;CL:0002321!2.04e-08!70;CL:0000220!2.04e-08!70|ontology_enrichment_celltype_v019_2=CL:0002319,1.13e-16,43;CL:0000221,1.15e-16,44;CL:0000133,1.15e-16,44;CL:0000393,4.34e-14,39;CL:0000211,4.34e-14,39;CL:0000540,2.72e-13,33;CL:0000047,2.72e-13,33;CL:0000031,2.72e-13,33;CL:0000404,2.72e-13,33;CL:0000117,3.79e-13,23;CL:0000337,3.79e-13,23;CL:0002321,1.98e-08,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!8.95e-33!102;UBERON:0000924!8.95e-33!102;UBERON:0006601!8.95e-33!102;UBERON:0000073!9.60e-31!75;UBERON:0001016!9.60e-31!75;UBERON:0001017!8.96e-30!73;UBERON:0005743!8.96e-30!73;UBERON:0002346!2.64e-24!71;UBERON:0003075!2.64e-24!71;UBERON:0007284!2.64e-24!71;UBERON:0001049!6.03e-23!52;UBERON:0005068!6.03e-23!52;UBERON:0006241!6.03e-23!52;UBERON:0007135!6.03e-23!52;UBERON:0000033!1.02e-22!63;UBERON:0000955!1.10e-21!50;UBERON:0006238!1.10e-21!50;UBERON:0002616!3.59e-21!49;UBERON:0002020!5.01e-20!34;UBERON:0003056!6.27e-19!49;UBERON:0002791!3.80e-17!29;UBERON:0003528!3.80e-17!29;UBERON:0001893!3.80e-17!29;UBERON:0003080!1.52e-16!40;UBERON:0002780!6.21e-16!39;UBERON:0001890!6.21e-16!39;UBERON:0006240!6.21e-16!39;UBERON:0007811!2.06e-15!86;UBERON:0000956!6.68e-13!21;UBERON:0001869!6.68e-13!21;UBERON:0000203!6.68e-13!21;UBERON:0000153!1.45e-11!94;UBERON:0002619!6.62e-11!17;UBERON:0002021!8.10e-08!10;UBERON:0000411!8.10e-08!10;UBERON:0001950!8.10e-08!10;UBERON:0003076!4.39e-07!12;UBERON:0003057!4.39e-07!12|ontology_enrichment_uberon_v019_2=UBERON:0004121,6.29e-34,95;UBERON:0000924,6.29e-34,95;UBERON:0006601,6.29e-34,95;UBERON:0001016,9.59e-31,75;UBERON:0001017,8.95e-30,73;UBERON:0010371,4.53e-26,73;UBERON:0002346,6.90e-26,64;UBERON:0003075,6.90e-26,64;UBERON:0007284,6.90e-26,64;UBERON:0000073,3.27e-24,54;UBERON:0001049,6.03e-23,52;UBERON:0005068,6.03e-23,52;UBERON:0006241,6.03e-23,52;UBERON:0007135,6.03e-23,52;UBERON:0002020,5.00e-20,34;UBERON:0000955,1.00e-19,47;UBERON:0006238,1.00e-19,47;UBERON:0002616,3.19e-19,46;UBERON:0003056,6.27e-19,49;UBERON:0003528,3.80e-17,29;UBERON:0002791,3.80e-17,29;UBERON:0001893,3.80e-17,29;UBERON:0003080,1.51e-16,40;UBERON:0010314,2.78e-16,92;UBERON:0002780,6.21e-16,39;UBERON:0001890,6.21e-16,39;UBERON:0006240,6.21e-16,39;UBERON:0000956,6.68e-13,21;UBERON:0001869,6.68e-13,21;UBERON:0000203,6.68e-13,21;UBERON:0002619,6.62e-11,17;UBERON:0002021,8.10e-08,10;UBERON:0000411,8.10e-08,10;UBERON:0001950,8.10e-08,10;UBERON:0003076,4.39e-07,12;UBERON:0003057,4.39e-07,12|phase1_expression=5.76535849577258,5.23463111459042,4.54999239389536,3.0246421130683,6.51164448930251,1.84667199103079,2.33612640595526,2.58246646883153,12.67098499365,16.8526458951835,5.30775701499065,3.11111420081812,0.856003649656029,1.13646523144697,1.33243904726265,2.42970320867791,2.09868563438444,0.473193248037357,0.548457734422955,0.84877930359606,10.5453679787327,2.78014663362479,2.87319768052829,10.239515058778,9.40578052375397,6.89078356938024,5.59990595006797,5.817723282519,6.08074942260396,6.30075324399827,7.53883736228036,1.27006134691926,0.61506478758457,0,0.288851619751275,1.99481574430191,1.63335485009895,8.37063261473815,7.0320181007142,4.18818995179039,11.7646297606203,6.83045484958446,7.76816564849846,7.67970589651021,9.32667767219534,11.5634453861859,9.38869613217647,11.9913836009246,16.0370913396164,15.5543919259427,8.39918529752175,12.9377307928474,2.85230430298152,5.07753499407941,2.01656279485478,10.5476368774738,8.88253663810146,8.76642556871652,37.4285452590256,44.4352422588508,40.5652098243955,9.82649143000483,10.6715375533337,12.1486461832989,14.8329954385046,10.6572017241915,16.1784059679939,18.4424786554346,22.7080250955566,23.0860154547191,23.3460707100034,45.132855535801,41.744154239855,27.9279022210095,22.8112221023403,30.3342199581307,53.9567816897005,56.5654907717382,49.6149102417666,37.3238194276449,35.8631562921446,34.9011958273029,52.765586811261,41.6444331423443,42.0195181386228,45.0781735774712,41.5725307933381,39.8894814066143,11.4346551933108,23.1248973926764,2.6087803983151,6.0229671388697,4.0798280022465,7.01614149129162,5.19821133958135,3.13618820968135,5.05599912474307,7.49893419343454,5.45550609666024,7.0667914902068,8.16891834704747,3.84979432242953,5.09610479413291,0,9.74209684550464,11.4011939463794,9.0994400102661,5.02409070763864,1.8125651855302,5.64080128446334,7.28638372417771,6.39377504455497,7.61031140944993,7.83757730873637,5.64425794251383,5.78066320116507,9.88779870937496,12.0017466243527,2.65383165584962,3.2353369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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=20168 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=Q9ES97 | |||
|association_with_transcript=70bp_to_ENSMUST00000025667,NM_053076_5end | |||
|cluster_id=chr19:7557689..7557700,- | |||
|description=CAGE_peak_4_at_Rtn3_5end | |||
|id=chr19:7557689..7557700,- | |||
|ontology_enrichment_celltype=CL:0000055!2.94e-17!50;CL:0002319!1.13e-16!43;CL:0000221!1.15e-16!44;CL:0000133!1.15e-16!44;CL:0000393!4.34e-14!39;CL:0000211!4.34e-14!39;CL:0000540!2.72e-13!33;CL:0000047!2.72e-13!33;CL:0000031!2.72e-13!33;CL:0000404!2.72e-13!33;CL:0000117!3.79e-13!23;CL:0000337!3.79e-13!23;CL:0002321!2.04e-08!70;CL:0000220!2.04e-08!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,1.13e-16,43;CL:0000221,1.15e-16,44;CL:0000133,1.15e-16,44;CL:0000393,4.34e-14,39;CL:0000211,4.34e-14,39;CL:0000540,2.72e-13,33;CL:0000047,2.72e-13,33;CL:0000031,2.72e-13,33;CL:0000404,2.72e-13,33;CL:0000117,3.79e-13,23;CL:0000337,3.79e-13,23;CL:0002321,1.98e-08,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!8.95e-33!102;UBERON:0000924!8.95e-33!102;UBERON:0006601!8.95e-33!102;UBERON:0000073!9.60e-31!75;UBERON:0001016!9.60e-31!75;UBERON:0001017!8.96e-30!73;UBERON:0005743!8.96e-30!73;UBERON:0002346!2.64e-24!71;UBERON:0003075!2.64e-24!71;UBERON:0007284!2.64e-24!71;UBERON:0001049!6.03e-23!52;UBERON:0005068!6.03e-23!52;UBERON:0006241!6.03e-23!52;UBERON:0007135!6.03e-23!52;UBERON:0000033!1.02e-22!63;UBERON:0000955!1.10e-21!50;UBERON:0006238!1.10e-21!50;UBERON:0002616!3.59e-21!49;UBERON:0002020!5.01e-20!34;UBERON:0003056!6.27e-19!49;UBERON:0002791!3.80e-17!29;UBERON:0003528!3.80e-17!29;UBERON:0001893!3.80e-17!29;UBERON:0003080!1.52e-16!40;UBERON:0002780!6.21e-16!39;UBERON:0001890!6.21e-16!39;UBERON:0006240!6.21e-16!39;UBERON:0007811!2.06e-15!86;UBERON:0000956!6.68e-13!21;UBERON:0001869!6.68e-13!21;UBERON:0000203!6.68e-13!21;UBERON:0000153!1.45e-11!94;UBERON:0002619!6.62e-11!17;UBERON:0002021!8.10e-08!10;UBERON:0000411!8.10e-08!10;UBERON:0001950!8.10e-08!10;UBERON:0003076!4.39e-07!12;UBERON:0003057!4.39e-07!12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,6.29e-34,95;UBERON:0000924,6.29e-34,95;UBERON:0006601,6.29e-34,95;UBERON:0001016,9.59e-31,75;UBERON:0001017,8.95e-30,73;UBERON:0010371,4.53e-26,73;UBERON:0002346,6.90e-26,64;UBERON:0003075,6.90e-26,64;UBERON:0007284,6.90e-26,64;UBERON:0000073,3.27e-24,54;UBERON:0001049,6.03e-23,52;UBERON:0005068,6.03e-23,52;UBERON:0006241,6.03e-23,52;UBERON:0007135,6.03e-23,52;UBERON:0002020,5.00e-20,34;UBERON:0000955,1.00e-19,47;UBERON:0006238,1.00e-19,47;UBERON:0002616,3.19e-19,46;UBERON:0003056,6.27e-19,49;UBERON:0003528,3.80e-17,29;UBERON:0002791,3.80e-17,29;UBERON:0001893,3.80e-17,29;UBERON:0003080,1.51e-16,40;UBERON:0010314,2.78e-16,92;UBERON:0002780,6.21e-16,39;UBERON:0001890,6.21e-16,39;UBERON:0006240,6.21e-16,39;UBERON:0000956,6.68e-13,21;UBERON:0001869,6.68e-13,21;UBERON:0000203,6.68e-13,21;UBERON:0002619,6.62e-11,17;UBERON:0002021,8.10e-08,10;UBERON:0000411,8.10e-08,10;UBERON:0001950,8.10e-08,10;UBERON:0003076,4.39e-07,12;UBERON:0003057,4.39e-07,12 | |||
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| |||
|short_description=p4@Rtn3 | |||
}} |
Latest revision as of 04:05, 26 September 2015
Short description: | p4@Rtn3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Rtn3_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 70bp_to_ENSMUST00000025667, NM_053076_5end |
EntrezGene: | Rtn3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 1.13e-16 | 43 |
ectodermal cell | 1.15e-16 | 44 |
neurectodermal cell | 1.15e-16 | 44 |
electrically responsive cell | 4.34e-14 | 39 |
electrically active cell | 4.34e-14 | 39 |
neuron | 2.72e-13 | 33 |
neuronal stem cell | 2.72e-13 | 33 |
neuroblast | 2.72e-13 | 33 |
electrically signaling cell | 2.72e-13 | 33 |
CNS neuron (sensu Vertebrata) | 3.79e-13 | 23 |
neuroblast (sensu Vertebrata) | 3.79e-13 | 23 |
embryonic cell | 1.98e-08 | 70 |