FFCP PHASE1:Mm9::chr2:25127900..25127941,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=68475 | |EntrezGene=68475 | ||
|HGNC= | |HGNC= | ||
|TSSclassifier=NA | |||
|UniProt=Q9JJ94,A2AI09,Q78YP7 | |UniProt=Q9JJ94,A2AI09,Q78YP7 | ||
|association_with_transcript=0bp_to_ENSMUST00000028342,ENSMUST00000127176,ENSMUST00000133697,NM_023464,uc008irb.1,uc008irc.1_5end | |association_with_transcript=0bp_to_ENSMUST00000028342,ENSMUST00000127176,ENSMUST00000133697,NM_023464,uc008irb.1,uc008irc.1_5end | ||
|cluster_id=chr2:25127900..25127941,- | |||
|description=CAGE_peak_1_at_Ssna1_5end | |description=CAGE_peak_1_at_Ssna1_5end | ||
|id=chr2:25127900..25127941,- | |id=chr2:25127900..25127941,- | ||
|ontology_enrichment_celltype=CL:0002319!9.40e-13!43;CL:0000221!1.04e-12!44;CL:0000133!1.04e-12!44;CL:0000055!6.34e-12!50;CL:0000540!3.94e-10!33;CL:0000047!3.94e-10!33;CL:0000031!3.94e-10!33;CL:0000404!3.94e-10!33;CL:0000723!9.32e-10!91;CL:0000048!9.32e-10!91;CL:0000393!2.52e-09!39;CL:0000211!2.52e-09!39;CL:0000117!1.73e-08!23;CL:0000337!1.73e-08!23;CL:0000034!8.94e-08!97;CL:0002371!2.78e-07!118;CL:0002321!9.16e-07!70;CL:0000220!9.16e-07!70 | |ontology_enrichment_celltype=CL:0002319!9.40e-13!43;CL:0000221!1.04e-12!44;CL:0000133!1.04e-12!44;CL:0000055!6.34e-12!50;CL:0000540!3.94e-10!33;CL:0000047!3.94e-10!33;CL:0000031!3.94e-10!33;CL:0000404!3.94e-10!33;CL:0000723!9.32e-10!91;CL:0000048!9.32e-10!91;CL:0000393!2.52e-09!39;CL:0000211!2.52e-09!39;CL:0000117!1.73e-08!23;CL:0000337!1.73e-08!23;CL:0000034!8.94e-08!97;CL:0002371!2.78e-07!118;CL:0002321!9.16e-07!70;CL:0000220!9.16e-07!70 | ||
|ontology_enrichment_celltype_v019_2=CL:0002319,9.40e-13,43;CL:0000221,1.04e-12,44;CL:0000133,1.04e-12,44;CL:0000540,3.94e-10,33;CL:0000047,3.94e-10,33;CL:0000031,3.94e-10,33;CL:0000404,3.94e-10,33;CL:0000723,9.32e-10,91;CL:0000048,9.32e-10,91;CL:0000393,2.52e-09,39;CL:0000211,2.52e-09,39;CL:0000117,1.73e-08,23;CL:0000337,1.73e-08,23;CL:0000034,8.94e-08,97;CL:0002321,9.16e-07,70 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!4.14e-12!75;UBERON:0001016!4.14e-12!75;UBERON:0001017!4.69e-12!73;UBERON:0005743!4.69e-12!73;UBERON:0002020!3.73e-10!34;UBERON:0002780!1.15e-08!39;UBERON:0001890!1.15e-08!39;UBERON:0006240!1.15e-08!39;UBERON:0002791!1.54e-08!29;UBERON:0003528!1.54e-08!29;UBERON:0001893!1.54e-08!29;UBERON:0001049!3.66e-08!52;UBERON:0005068!3.66e-08!52;UBERON:0006241!3.66e-08!52;UBERON:0007135!3.66e-08!52;UBERON:0003080!4.19e-08!40;UBERON:0003056!1.53e-07!49;UBERON:0004121!2.80e-07!102;UBERON:0000924!2.80e-07!102;UBERON:0006601!2.80e-07!102;UBERON:0002346!6.03e-07!71;UBERON:0003075!6.03e-07!71;UBERON:0007284!6.03e-07!71;UBERON:0002616!7.29e-07!49;UBERON:0000956!8.02e-07!21;UBERON:0001869!8.02e-07!21;UBERON:0000203!8.02e-07!21 | |ontology_enrichment_uberon=UBERON:0000073!4.14e-12!75;UBERON:0001016!4.14e-12!75;UBERON:0001017!4.69e-12!73;UBERON:0005743!4.69e-12!73;UBERON:0002020!3.73e-10!34;UBERON:0002780!1.15e-08!39;UBERON:0001890!1.15e-08!39;UBERON:0006240!1.15e-08!39;UBERON:0002791!1.54e-08!29;UBERON:0003528!1.54e-08!29;UBERON:0001893!1.54e-08!29;UBERON:0001049!3.66e-08!52;UBERON:0005068!3.66e-08!52;UBERON:0006241!3.66e-08!52;UBERON:0007135!3.66e-08!52;UBERON:0003080!4.19e-08!40;UBERON:0003056!1.53e-07!49;UBERON:0004121!2.80e-07!102;UBERON:0000924!2.80e-07!102;UBERON:0006601!2.80e-07!102;UBERON:0002346!6.03e-07!71;UBERON:0003075!6.03e-07!71;UBERON:0007284!6.03e-07!71;UBERON:0002616!7.29e-07!49;UBERON:0000956!8.02e-07!21;UBERON:0001869!8.02e-07!21;UBERON:0000203!8.02e-07!21 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,4.14e-12,75;UBERON:0001017,4.69e-12,73;UBERON:0002020,3.73e-10,34;UBERON:0002780,1.15e-08,39;UBERON:0001890,1.15e-08,39;UBERON:0006240,1.15e-08,39;UBERON:0003528,1.54e-08,29;UBERON:0002791,1.54e-08,29;UBERON:0001893,1.54e-08,29;UBERON:0004121,1.60e-08,95;UBERON:0000924,1.60e-08,95;UBERON:0006601,1.60e-08,95;UBERON:0002346,1.61e-08,64;UBERON:0003075,1.61e-08,64;UBERON:0007284,1.61e-08,64;UBERON:0000073,2.60e-08,54;UBERON:0001049,3.66e-08,52;UBERON:0005068,3.66e-08,52;UBERON:0006241,3.66e-08,52;UBERON:0007135,3.66e-08,52;UBERON:0003080,4.19e-08,40;UBERON:0003056,1.53e-07,49;UBERON:0002616,2.91e-07,46;UBERON:0000955,7.65e-07,47;UBERON:0006238,7.65e-07,47;UBERON:0000956,8.02e-07,21;UBERON:0001869,8.02e-07,21;UBERON:0000203,8.02e-07,21 | |||
|phase1_expression=26.424559772291,4.53668029931169,8.64498554840118,11.1911758183527,9.01612313903425,19.3061162698673,16.3528848416868,27.6323912164973,5.06839399746,4.21316147379588,8.73211637950075,11.8062795313098,19.3456824822262,20.1941129587884,43.6373787978518,38.0653502692873,53.1667027377391,21.7668894097184,20.2929361736493,30.1316652776601,26.6185498172848,24.0284101906142,32.6499736423669,15.5192650109604,16.9762867989706,13.7815671387605,10.7690499039769,8.83432054012145,11.5914285868388,12.6015064879965,15.9645967671819,60.9629446521246,39.3641464054125,15.8481681015439,37.839562187417,36.2391526881513,30.421234083093,47.7126059040075,44.5361146378566,30.8879008944541,36.4703522579229,36.2014107027976,30.5871522409627,21.4024590558481,19.9712554502444,15.9685674380663,33.6428278069657,47.9655344036982,27.02140047634,27.8034755676225,30.0970806494529,48.8758718840903,10.9058693937529,10.8804321301702,16.1325023588383,31.3856511963855,25.7880095944881,34.0343580903112,34.3937983461316,44.9642332381228,46.9035238594573,49.8101462141624,64.029225320002,40.0455374190223,43.5101199529469,59.6803296554724,31.7576117149509,40.7271403640848,37.5356396556689,41.5818290061607,44.588891806493,41.9906947073591,43.7319711084195,44.0966877173835,45.9099806177352,55.1531271966013,23.1243350098716,22.8560335172486,20.5832754563366,38.6426823049468,37.0524956589759,45.8403766089949,28.1974828991395,35.4540444319958,25.2117108831737,31.2306300602088,26.9082476710305,31.1287074528252,26.3527152799481,24.5607570347053,14.2033599463822,24.9522924324602,10.1995700056163,20.5087212822371,14.9448576012964,9.40856462904405,20.0835520788405,27.7801425802234,47.2810528377221,38.1606740471167,25.4926589795792,17.9657068380045,30.5766287647975,21.3320010945999,29.4427815775251,27.6162253367857,25.7817466957539,13.5878816865681,9.06282592765101,9.94562331734326,29.6659908770092,24.6617037432834,22.3697032338377,20.0461111934988,13.9930561491489,14.702991185572,15.5732829672656,10.5557530551536,35.384422077995,16.985519244478,18.7715290691335,24.2437626567611,11.1835056730873,17.5668478206928,15.4990563041957,11.7510245395952,16.1750418082992,25.7958174327165,19.4417447421789,16.1773890557209,20.1300265240196,31.7905510845547,19.2944995413427,28.640131220997,20.778804455956,24.3361894601636,21.7936238639677,20.7759640918855,17.9433158487909,11.3638602178696,25.893968149578,43.9113019467933,30.6105620669094,26.3733431212501,22.7241907165435,26.6476538192488,26.611289774963,11.9003550539947,27.377135102471,22.1254113796349,30.6154956045271,29.372228145295,31.6973864117182,24.3776516565517,24.2822920961373,24.8792833523116,23.1730351813367,27.0215302470451,23.8697339492298,20.0911999359437,21.1073453982987,26.6491850962302,26.0419209143731,21.447301260467,28.6936829970524,22.5557926407896,24.4128795273653,20.4339349142547,21.7219001885794,18.3867559768587,16.2137619091711,17.6901984784652,16.4662586468288,18.2520729514106,23.5524742391823,27.6813407300275,4.62586296177317,10.0491215332147,29.4337785738623,27.6361639513922,21.1342636568233,16.3363654944907,18.902133726814,17.5007576023554,13.7613427847908,15.9757986082291,18.5988054512199,17.3092130675801,17.7417319278399,17.0775687644302,12.9682829924817,9.16049856970089,35.6575653791794,22.3927084715069,19.1603150644237,21.1797380959127,22.4984885114446,13.8868923382831,12.2678882021059,14.3181843540214,12.0889020437859,14.5608653427725,12.7474629647474,26.1946815974268,26.142346350056,30.5812472843401,26.1689556591169,24.8412474544989,32.5921090280217,27.331133057827,13.2950885955529,19.4938603363538,8.62609239164127,19.3513292787622,16.5379966750717,18.9434158460334,17.9397413521912,14.9557491622644,14.5955020231618,40.9301449424247,22.3262017725575,35.4767229270143,29.8056615326398,23.2833697844124,19.7576221935391,15.2204245329083,13.7142575372386,15.0595988961167,15.1482030224613,20.3190510247515,15.3689633860647,19.238324791341,27.142431109069,29.3709069262103,21.6376280128376,12.9690270763224,22.4770825982909,15.3547309435786,18.5246488275643,13.6334300690361,38.1764945493671,35.5299257309941,24.3428439438063,34.4115069051675,28.2954316084641,24.9107347094173,29.9559919239422,30.1023533648651,28.8560077900962,16.708708453934,15.7553494581178,32.764071074775,19.7093220817827,12.7026994688852,7.96470830039777,32.0470439724576,27.8137672407571,19.8035333743693,25.3959627877465,18.1386737286917,16.2809824695979,12.7236805317127,16.7553767840819,12.009396801561,6.32511651449993,16.5016869197099,23.1498931912576,29.1698972330723,37.2553009294333,34.5082626400864,21.4581682707151,27.2904290931168,26.4923923169415,24.6616608782825,13.1416156515678,24.3606881493393,16.9806866502321,19.1268053412117,17.5996225098537,16.7669931300273,18.9802026964987,20.3534715683876,13.9910801582328,13.7214723487777,28.1936953316457,27.6558403070718,29.0755407970447,39.1806390569757,31.0295896926727,37.9771767522828,13.5982743995084,11.6159705428636,14.5109972494645,22.9120948323627,28.31207142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|phase1_expression=26.424559772291,4.53668029931169,8.64498554840118,11.1911758183527,9.01612313903425,19.3061162698673,16.3528848416868,27.6323912164973,5.06839399746,4.21316147379588,8.73211637950075,11.8062795313098,19.3456824822262,20.1941129587884,43.6373787978518,38.0653502692873,53.1667027377391,21.7668894097184,20.2929361736493,30.1316652776601,26.6185498172848,24.0284101906142,32.6499736423669,15.5192650109604,16.9762867989706,13.7815671387605,10.7690499039769,8.83432054012145,11.5914285868388,12.6015064879965,15.9645967671819,60.9629446521246,39.3641464054125,15.8481681015439,37.839562187417,36.2391526881513,30.421234083093,47.7126059040075,44.5361146378566,30.8879008944541,36.4703522579229,36.2014107027976,30.5871522409627,21.4024590558481,19.9712554502444,15.9685674380663,33.6428278069657,47.9655344036982,27.02140047634,27.8034755676225,30.0970806494529,48.8758718840903,10.9058693937529,10.8804321301702,16.1325023588383,31.3856511963855,25.7880095944881,34.0343580903112,34.3937983461316,44.9642332381228,46.9035238594573,49.8101462141624,64.029225320002,40.0455374190223,43.5101199529469,59.6803296554724,31.7576117149509,40.7271403640848,37.5356396556689,41.5818290061607,44.588891806493,41.9906947073591,43.7319711084195,44.0966877173835,45.9099806177352,55.1531271966013,23.1243350098716,22.8560335172486,20.5832754563366,38.6426823049468,37.0524956589759,45.8403766089949,28.1974828991395,35.4540444319958,25.2117108831737,31.2306300602088,26.9082476710305,31.1287074528252,26.3527152799481,24.5607570347053,14.2033599463822,24.9522924324602,10.1995700056163,20.5087212822371,14.9448576012964,9.40856462904405,20.0835520788405,27.7801425802234,47.2810528377221,38.1606740471167,25.4926589795792,17.9657068380045,30.5766287647975,21.3320010945999,29.4427815775251,27.6162253367857,25.7817466957539,13.5878816865681,9.06282592765101,9.94562331734326,29.6659908770092,24.6617037432834,22.3697032338377,20.0461111934988,13.9930561491489,14.702991185572,15.5732829672656,10.5557530551536,35.384422077995,16.985519244478,18.7715290691335,24.2437626567611,11.1835056730873,17.5668478206928,15.4990563041957,11.7510245395952,16.1750418082992,25.7958174327165,19.4417447421789,16.1773890557209,20.1300265240196,31.7905510845547,19.2944995413427,28.640131220997,20.778804455956,24.3361894601636,21.7936238639677,20.7759640918855,17.9433158487909,11.3638602178696,25.893968149578,43.9113019467933,30.6105620669094,26.3733431212501,22.7241907165435,26.6476538192488,26.611289774963,11.9003550539947,27.377135102471,22.1254113796349,30.6154956045271,29.372228145295,31.6973864117182,24.3776516565517,24.2822920961373,24.8792833523116,23.1730351813367,27.0215302470451,23.8697339492298,20.0911999359437,21.1073453982987,26.6491850962302,26.0419209143731,21.447301260467,28.6936829970524,22.5557926407896,24.4128795273653,20.4339349142547,21.7219001885794,18.3867559768587,16.2137619091711,17.6901984784652,16.4662586468288,18.2520729514106,23.5524742391823,27.6813407300275,4.62586296177317,10.0491215332147,29.4337785738623,27.6361639513922,21.1342636568233,16.3363654944907,18.902133726814,17.5007576023554,13.7613427847908,15.9757986082291,18.5988054512199,17.3092130675801,17.7417319278399,17.0775687644302,12.9682829924817,9.16049856970089,35.6575653791794,22.3927084715069,19.1603150644237,21.1797380959127,22.4984885114446,13.8868923382831,12.2678882021059,14.3181843540214,12.0889020437859,14.5608653427725,12.7474629647474,26.1946815974268,26.142346350056,30.5812472843401,26.1689556591169,24.8412474544989,32.5921090280217,27.331133057827,13.2950885955529,19.4938603363538,8.62609239164127,19.3513292787622,16.5379966750717,18.9434158460334,17.9397413521912,14.9557491622644,14.5955020231618,40.9301449424247,22.3262017725575,35.4767229270143,29.8056615326398,23.2833697844124,19.7576221935391,15.2204245329083,13.7142575372386,15.0595988961167,15.1482030224613,20.3190510247515,15.3689633860647,19.238324791341,27.142431109069,29.3709069262103,21.6376280128376,12.9690270763224,22.4770825982909,15.3547309435786,18.5246488275643,13.6334300690361,38.1764945493671,35.5299257309941,24.3428439438063,34.4115069051675,28.2954316084641,24.9107347094173,29.9559919239422,30.1023533648651,28.8560077900962,16.708708453934,15.7553494581178,32.764071074775,19.7093220817827,12.7026994688852,7.96470830039777,32.0470439724576,27.8137672407571,19.8035333743693,25.3959627877465,18.1386737286917,16.2809824695979,12.7236805317127,16.7553767840819,12.009396801561,6.32511651449993,16.5016869197099,23.1498931912576,29.1698972330723,37.2553009294333,34.5082626400864,21.4581682707151,27.2904290931168,26.4923923169415,24.6616608782825,13.1416156515678,24.3606881493393,16.9806866502321,19.1268053412117,17.5996225098537,16.7669931300273,18.9802026964987,20.3534715683876,13.9910801582328,13.7214723487777,28.1936953316457,27.6558403070718,29.0755407970447,39.1806390569757,31.0295896926727,37.9771767522828,13.5982743995084,11.6159705428636,14.5109972494645,22.9120948323627,28.31207142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| ||
|short_description=p1@Ssna1 | |short_description=p1@Ssna1 | ||
}} | }} |
Latest revision as of 10:07, 26 September 2015
Short description: | p1@Ssna1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Ssna1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000028342, ENSMUST00000127176, ENSMUST00000133697, NM_023464, uc008irb.1, uc008irc.1_5end |
EntrezGene: | Ssna1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 9.40e-13 | 43 |
ectodermal cell | 1.04e-12 | 44 |
neurectodermal cell | 1.04e-12 | 44 |
neuron | 3.94e-10 | 33 |
neuronal stem cell | 3.94e-10 | 33 |
neuroblast | 3.94e-10 | 33 |
electrically signaling cell | 3.94e-10 | 33 |
somatic stem cell | 9.32e-10 | 91 |
multi fate stem cell | 9.32e-10 | 91 |
electrically responsive cell | 2.52e-09 | 39 |
electrically active cell | 2.52e-09 | 39 |
CNS neuron (sensu Vertebrata) | 1.73e-08 | 23 |
neuroblast (sensu Vertebrata) | 1.73e-08 | 23 |
stem cell | 8.94e-08 | 97 |
embryonic cell | 9.16e-07 | 70 |
Ontology term | p-value | n |
---|---|---|
nervous system | 4.14e-12 | 75 |
central nervous system | 4.69e-12 | 73 |
gray matter | 3.73e-10 | 34 |
regional part of forebrain | 1.15e-08 | 39 |
forebrain | 1.15e-08 | 39 |
future forebrain | 1.15e-08 | 39 |
brain grey matter | 1.54e-08 | 29 |
regional part of telencephalon | 1.54e-08 | 29 |
telencephalon | 1.54e-08 | 29 |
ectoderm-derived structure | 1.60e-08 | 95 |
ectoderm | 1.60e-08 | 95 |
presumptive ectoderm | 1.60e-08 | 95 |
neurectoderm | 1.61e-08 | 64 |
neural plate | 1.61e-08 | 64 |
presumptive neural plate | 1.61e-08 | 64 |
regional part of nervous system | 2.60e-08 | 54 |
neural tube | 3.66e-08 | 52 |
neural rod | 3.66e-08 | 52 |
future spinal cord | 3.66e-08 | 52 |
neural keel | 3.66e-08 | 52 |
anterior neural tube | 4.19e-08 | 40 |
pre-chordal neural plate | 1.53e-07 | 49 |
regional part of brain | 2.91e-07 | 46 |
brain | 7.65e-07 | 47 |
future brain | 7.65e-07 | 47 |
cerebral cortex | 8.02e-07 | 21 |
cerebral hemisphere | 8.02e-07 | 21 |
pallium | 8.02e-07 | 21 |