FFCP PHASE1:Mm9::chr6:129483386..129483419,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 mm9::chr6:129483386..129483419,+ to FFCP PHASE1:Mm9::chr6:129483386..129483419,+: NSchange) |
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(7 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=57436 | |EntrezGene=57436 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=0 | |||
|TSSclassifier=NA | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=12bp_to_uc009ega.1_5end | |||
|cluster_id=chr6:129483386..129483419,+ | |||
|description=CAGE_peak_3_at_Gabarapl1_5end | |||
|id=chr6:129483386..129483419,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.15e-07!50;CL:0000393!5.18e-07!39;CL:0000211!5.18e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000393,5.16e-07,39;CL:0000211,5.16e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!2.04e-17!102;UBERON:0000924!2.04e-17!102;UBERON:0006601!2.04e-17!102;UBERON:0000073!2.75e-17!75;UBERON:0001016!2.75e-17!75;UBERON:0001017!8.22e-17!73;UBERON:0005743!8.22e-17!73;UBERON:0002346!1.44e-14!71;UBERON:0003075!1.44e-14!71;UBERON:0007284!1.44e-14!71;UBERON:0000033!2.30e-13!63;UBERON:0001049!2.63e-13!52;UBERON:0005068!2.63e-13!52;UBERON:0006241!2.63e-13!52;UBERON:0007135!2.63e-13!52;UBERON:0000955!1.60e-12!50;UBERON:0006238!1.60e-12!50;UBERON:0002616!4.90e-12!49;UBERON:0002020!8.36e-12!34;UBERON:0003056!4.55e-10!49;UBERON:0002791!1.80e-09!29;UBERON:0003528!1.80e-09!29;UBERON:0001893!1.80e-09!29;UBERON:0003080!2.02e-09!40;UBERON:0004111!3.60e-09!122;UBERON:0002780!6.20e-09!39;UBERON:0001890!6.20e-09!39;UBERON:0006240!6.20e-09!39;UBERON:0000025!9.56e-09!114;UBERON:0002021!9.44e-08!10;UBERON:0000411!9.44e-08!10;UBERON:0001950!9.44e-08!10;UBERON:0002619!9.50e-08!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.89e-17,75;UBERON:0004121,4.42e-17,95;UBERON:0000924,4.42e-17,95;UBERON:0006601,4.42e-17,95;UBERON:0001017,8.66e-17,73;UBERON:0002346,1.67e-14,64;UBERON:0003075,1.67e-14,64;UBERON:0007284,1.67e-14,64;UBERON:0000073,2.29e-14,54;UBERON:0001049,2.78e-13,52;UBERON:0005068,2.78e-13,52;UBERON:0006241,2.78e-13,52;UBERON:0007135,2.78e-13,52;UBERON:0010371,4.19e-13,73;UBERON:0010314,5.39e-12,92;UBERON:0002020,8.30e-12,34;UBERON:0000955,6.03e-11,47;UBERON:0006238,6.03e-11,47;UBERON:0002616,1.78e-10,46;UBERON:0003056,4.78e-10,49;UBERON:0003528,1.79e-09,29;UBERON:0002791,1.79e-09,29;UBERON:0001893,1.79e-09,29;UBERON:0003080,2.13e-09,40;UBERON:0004111,3.76e-09,122;UBERON:0002780,6.54e-09,39;UBERON:0001890,6.54e-09,39;UBERON:0006240,6.54e-09,39;UBERON:0000025,9.99e-09,114;UBERON:0002021,9.41e-08,10;UBERON:0000411,9.41e-08,10;UBERON:0001950,9.41e-08,10;UBERON:0002619,9.46e-08,17 | |||
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| ||
|short_description=p3@Gabarapl1 | |||
}} | }} |
Latest revision as of 19:15, 26 September 2015
Short description: | p3@Gabarapl1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Gabarapl1_5end |
Coexpression cluster: | MCL_coexpression_mm9:0 |
Association with transcript: | 12bp_to_uc009ega.1_5end |
EntrezGene: | Gabarapl1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 5.16e-07 | 39 |
electrically active cell | 5.16e-07 | 39 |
Ontology term | p-value | n |
---|---|---|
nervous system | 2.89e-17 | 75 |
ectoderm-derived structure | 4.42e-17 | 95 |
ectoderm | 4.42e-17 | 95 |
presumptive ectoderm | 4.42e-17 | 95 |
central nervous system | 8.66e-17 | 73 |
neurectoderm | 1.67e-14 | 64 |
neural plate | 1.67e-14 | 64 |
presumptive neural plate | 1.67e-14 | 64 |
regional part of nervous system | 2.29e-14 | 54 |
neural tube | 2.78e-13 | 52 |
neural rod | 2.78e-13 | 52 |
future spinal cord | 2.78e-13 | 52 |
neural keel | 2.78e-13 | 52 |
ecto-epithelium | 4.19e-13 | 73 |
structure with developmental contribution from neural crest | 5.39e-12 | 92 |
gray matter | 8.30e-12 | 34 |
brain | 6.03e-11 | 47 |
future brain | 6.03e-11 | 47 |
regional part of brain | 1.78e-10 | 46 |
pre-chordal neural plate | 4.78e-10 | 49 |
brain grey matter | 1.79e-09 | 29 |
regional part of telencephalon | 1.79e-09 | 29 |
telencephalon | 1.79e-09 | 29 |
anterior neural tube | 2.13e-09 | 40 |
anatomical conduit | 3.76e-09 | 122 |
regional part of forebrain | 6.54e-09 | 39 |
forebrain | 6.54e-09 | 39 |
future forebrain | 6.54e-09 | 39 |
tube | 9.99e-09 | 114 |
occipital lobe | 9.41e-08 | 10 |
visual cortex | 9.41e-08 | 10 |
neocortex | 9.41e-08 | 10 |
regional part of cerebral cortex | 9.46e-08 | 17 |