FFCP PHASE1:Mm9::chr2:80421429..80421450,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=50884 | |EntrezGene=50884 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=361 | |MCL_coexpression_id=361 | ||
|TSSclassifier=NA | |||
|UniProt=P28660 | |UniProt=P28660 | ||
|association_with_transcript=-8bp_to_ENSMUST00000028386_5end | |association_with_transcript=-8bp_to_ENSMUST00000028386_5end | ||
|cluster_id=chr2:80421429..80421450,- | |||
|description=CAGE_peak_3_at_Nckap1_5end | |description=CAGE_peak_3_at_Nckap1_5end | ||
|id=chr2:80421429..80421450,- | |id=chr2:80421429..80421450,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!8.44e-14!102;UBERON:0000924!8.44e-14!102;UBERON:0006601!8.44e-14!102;UBERON:0002346!3.13e-12!71;UBERON:0003075!3.13e-12!71;UBERON:0007284!3.13e-12!71;UBERON:0000033!9.50e-12!63;UBERON:0000073!3.91e-11!75;UBERON:0001016!3.91e-11!75;UBERON:0001017!1.32e-10!73;UBERON:0005743!1.32e-10!73;UBERON:0000468!2.55e-10!333;UBERON:0001049!2.97e-10!52;UBERON:0005068!2.97e-10!52;UBERON:0006241!2.97e-10!52;UBERON:0007135!2.97e-10!52;UBERON:0000955!3.58e-10!50;UBERON:0006238!3.58e-10!50;UBERON:0002616!1.25e-09!49;UBERON:0003056!1.97e-09!49;UBERON:0000922!1.42e-08!328;UBERON:0003080!1.19e-07!40;UBERON:0000025!2.23e-07!114;UBERON:0002021!2.79e-07!10;UBERON:0000411!2.79e-07!10;UBERON:0001950!2.79e-07!10;UBERON:0002020!3.61e-07!34;UBERON:0002780!3.86e-07!39;UBERON:0001890!3.86e-07!39;UBERON:0006240!3.86e-07!39;UBERON:0004111!5.10e-07!122 | |ontology_enrichment_uberon=UBERON:0004121!8.44e-14!102;UBERON:0000924!8.44e-14!102;UBERON:0006601!8.44e-14!102;UBERON:0002346!3.13e-12!71;UBERON:0003075!3.13e-12!71;UBERON:0007284!3.13e-12!71;UBERON:0000033!9.50e-12!63;UBERON:0000073!3.91e-11!75;UBERON:0001016!3.91e-11!75;UBERON:0001017!1.32e-10!73;UBERON:0005743!1.32e-10!73;UBERON:0000468!2.55e-10!333;UBERON:0001049!2.97e-10!52;UBERON:0005068!2.97e-10!52;UBERON:0006241!2.97e-10!52;UBERON:0007135!2.97e-10!52;UBERON:0000955!3.58e-10!50;UBERON:0006238!3.58e-10!50;UBERON:0002616!1.25e-09!49;UBERON:0003056!1.97e-09!49;UBERON:0000922!1.42e-08!328;UBERON:0003080!1.19e-07!40;UBERON:0000025!2.23e-07!114;UBERON:0002021!2.79e-07!10;UBERON:0000411!2.79e-07!10;UBERON:0001950!2.79e-07!10;UBERON:0002020!3.61e-07!34;UBERON:0002780!3.86e-07!39;UBERON:0001890!3.86e-07!39;UBERON:0006240!3.86e-07!39;UBERON:0004111!5.10e-07!122 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,9.60e-14,92;UBERON:0004121,1.43e-13,95;UBERON:0000924,1.43e-13,95;UBERON:0006601,1.43e-13,95;UBERON:0010371,2.92e-13,73;UBERON:0002346,3.07e-12,64;UBERON:0003075,3.07e-12,64;UBERON:0007284,3.07e-12,64;UBERON:0001016,3.84e-11,75;UBERON:0000073,1.23e-10,54;UBERON:0001017,1.30e-10,73;UBERON:0001049,2.92e-10,52;UBERON:0005068,2.92e-10,52;UBERON:0006241,2.92e-10,52;UBERON:0007135,2.92e-10,52;UBERON:0000922,9.57e-10,320;UBERON:0003056,1.93e-09,49;UBERON:0000955,2.86e-09,47;UBERON:0006238,2.86e-09,47;UBERON:0002616,9.68e-09,46;UBERON:0003080,1.17e-07,40;UBERON:0000025,2.20e-07,114;UBERON:0002021,2.76e-07,10;UBERON:0000411,2.76e-07,10;UBERON:0001950,2.76e-07,10;UBERON:0002020,3.56e-07,34;UBERON:0002780,3.82e-07,39;UBERON:0001890,3.82e-07,39;UBERON:0006240,3.82e-07,39;UBERON:0004111,5.05e-07,122 | |||
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| ||
|short_description=p3@Nckap1 | |short_description=p3@Nckap1 | ||
}} | }} |
Latest revision as of 01:17, 27 September 2015
Short description: | p3@Nckap1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Nckap1_5end |
Coexpression cluster: | MCL_coexpression_mm9:361 |
Association with transcript: | -8bp_to_ENSMUST00000028386_5end |
EntrezGene: | Nckap1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
structure with developmental contribution from neural crest | 9.60e-14 | 92 |
ectoderm-derived structure | 1.43e-13 | 95 |
ectoderm | 1.43e-13 | 95 |
presumptive ectoderm | 1.43e-13 | 95 |
ecto-epithelium | 2.92e-13 | 73 |
neurectoderm | 3.07e-12 | 64 |
neural plate | 3.07e-12 | 64 |
presumptive neural plate | 3.07e-12 | 64 |
nervous system | 3.84e-11 | 75 |
regional part of nervous system | 1.23e-10 | 54 |
central nervous system | 1.30e-10 | 73 |
neural tube | 2.92e-10 | 52 |
neural rod | 2.92e-10 | 52 |
future spinal cord | 2.92e-10 | 52 |
neural keel | 2.92e-10 | 52 |
embryo | 9.57e-10 | 320 |
pre-chordal neural plate | 1.93e-09 | 49 |
brain | 2.86e-09 | 47 |
future brain | 2.86e-09 | 47 |
regional part of brain | 9.68e-09 | 46 |
anterior neural tube | 1.17e-07 | 40 |
tube | 2.20e-07 | 114 |
occipital lobe | 2.76e-07 | 10 |
visual cortex | 2.76e-07 | 10 |
neocortex | 2.76e-07 | 10 |
gray matter | 3.56e-07 | 34 |
regional part of forebrain | 3.82e-07 | 39 |
forebrain | 3.82e-07 | 39 |
future forebrain | 3.82e-07 | 39 |
anatomical conduit | 5.05e-07 | 122 |