FFCP PHASE1:Mm9::chr9:99776566..99776612,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=20669 | |EntrezGene=20669 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=224 | |||
|TSSclassifier=NA | |||
|UniProt=Q04892,Q3UUP3,Q497H4,Q7TNS9 | |UniProt=Q04892,Q3UUP3,Q497H4,Q7TNS9 | ||
|association_with_transcript=0bp_to_NM_011440,uc012gzb.1_5end | |association_with_transcript=0bp_to_NM_011440,uc012gzb.1_5end | ||
|cluster_id=chr9:99776566..99776612,- | |||
|description=CAGE_peak_1_at_Sox14_5end | |description=CAGE_peak_1_at_Sox14_5end | ||
|id=chr9:99776566..99776612,- | |id=chr9:99776566..99776612,- | ||
|ontology_enrichment_celltype=CL:0000117!1.59e-14!23;CL:0000337!1.59e-14!23;CL:0000540!2.67e-08!33;CL:0000047!2.67e-08!33;CL:0000031!2.67e-08!33;CL:0000404!2.67e-08!33 | |ontology_enrichment_celltype=CL:0000117!1.59e-14!23;CL:0000337!1.59e-14!23;CL:0000540!2.67e-08!33;CL:0000047!2.67e-08!33;CL:0000031!2.67e-08!33;CL:0000404!2.67e-08!33 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.29e-19,23;CL:0000337,3.29e-19,23;CL:0000540,6.86e-12,33;CL:0000047,6.86e-12,33;CL:0000031,6.86e-12,33;CL:0000404,6.86e-12,33;CL:0000393,2.45e-09,39;CL:0000211,2.45e-09,39;CL:0002319,4.79e-08,43;CL:0000221,9.21e-08,44;CL:0000133,9.21e-08,44;CL:0000120,7.45e-07,3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001894!1.75e-11!10;UBERON:0006222!1.75e-11!10;UBERON:0000007!1.53e-09!8;UBERON:0003296!1.53e-09!8;UBERON:0010133!1.53e-09!8;UBERON:0001049!5.43e-09!52;UBERON:0005068!5.43e-09!52;UBERON:0006241!5.43e-09!52;UBERON:0007135!5.43e-09!52;UBERON:0001017!7.39e-09!73;UBERON:0005743!7.39e-09!73;UBERON:0000073!2.29e-08!75;UBERON:0001016!2.29e-08!75;UBERON:0002240!1.90e-07!6;UBERON:0005174!1.90e-07!6;UBERON:0001137!1.90e-07!6;UBERON:0002616!3.63e-07!49;UBERON:0000955!6.84e-07!50;UBERON:0006238!6.84e-07!50;UBERON:0001948!7.20e-07!5;UBERON:0002315!7.20e-07!5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001894,2.93e-13,10;UBERON:0006222,2.93e-13,10;UBERON:0000073,4.79e-13,54;UBERON:0001017,3.20e-11,73;UBERON:0001016,1.01e-10,75;UBERON:0000007,1.54e-10,8;UBERON:0003296,1.54e-10,8;UBERON:0010133,1.54e-10,8;UBERON:0001049,7.20e-10,52;UBERON:0005068,7.20e-10,52;UBERON:0006241,7.20e-10,52;UBERON:0007135,7.20e-10,52;UBERON:0001948,4.55e-09,5;UBERON:0002315,4.55e-09,5;UBERON:0003080,1.42e-07,40;UBERON:0002420,1.75e-07,8;UBERON:0007245,1.75e-07,8;UBERON:0010009,1.75e-07,8;UBERON:0010011,1.75e-07,8;UBERON:0000454,1.75e-07,8;UBERON:0002240,1.87e-07,6;UBERON:0005174,1.87e-07,6;UBERON:0001137,1.87e-07,6;UBERON:0002950,5.49e-07,4;UBERON:0001891,5.49e-07,4;UBERON:0009616,5.49e-07,4;UBERON:0010286,5.49e-07,4;UBERON:0002346,5.55e-07,64;UBERON:0003075,5.55e-07,64;UBERON:0007284,5.55e-07,64;UBERON:0004121,5.95e-07,95;UBERON:0000924,5.95e-07,95;UBERON:0006601,5.95e-07,95 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425216450755349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,62.3134699447561,73.5297461188126,55.7771635085438,0,0,0,0,0,0,0,0,0,0,4.28476476605705,2.65042249141936,0,0.0958454710182364,0,4.40463523997555,3.06449611404451,3.5329502648936,13.8480602116704,15.7358746996145,15.106487746146,2.23346399201105,1.68828783009504,2.44477196442896,2.94628585473668,5.83723891276322,6.52398060388552,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16.1773890557209,0,0,0,0,4.1557608911912,1.94689515681309,0,0,0,0,0.650602214813519,0,0.180062129805349,0.60281927134286,0.204109497453984,0,0,0,0.215567992932842,0.189106080167819,0.175951124163949,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.827810238914197,0.80275294993896,0.820481806145422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340439605753788,10.2634823597847,8.92574918101006,4.92975180572662,4.61084607469911,3.0322698992352,2.79733335023606,3.34911444026059,0,0,0,0,0,0,0,0,0,0.927126510052548,0,0,0,0,0,0,0.169978429993855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.337912250981556,0.117357238645754,0.13020438484395,0,0,0.288030006257865,0,0.202725215290164,0,0,0,0.198681354781265,0,0,0,0.0762068066549998,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.3492355185943,1.99512436700516,3.24393850932855,2.43106717068294,1.46729213839588,1.47074806760011,2.22246727801615,0.824140228955577,2.88827288632634,1.51618327058278,0.50695859978048,2.26351609663291,1.87283014939765,1.15245274328765,1.66562859971278,1.90517476513229,1.27472758539341,0.77163688185482,0.412085900803307,1.32479028120958,2.05721551431249,1.4198064492747,1.43061713968393,0.436039249896986,1.31753132581463,1.69229215783353,1.82927972872773,1.05227884575137,1.90125759384206,0.561142271657738,1.66089025373844,1.18205378850676,2.45538625901814,1.23949472948773,1.15743966588685,3.74715866906919,1.63752125911786,0.214871054048298,0.765153328275374,0.220591419119515,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425216450755349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,62.3134699447561,73.5297461188126,55.7771635085438,0,0,0,0,0,0,0,0,0,0,4.28476476605705,2.65042249141936,0,0.0958454710182364,0,4.40463523997555,3.06449611404451,3.5329502648936,13.8480602116704,15.7358746996145,15.106487746146,2.23346399201105,1.68828783009504,2.44477196442896,2.94628585473668,5.83723891276322,6.52398060388552,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16.1773890557209,0,0,0,0,4.1557608911912,1.94689515681309,0,0,0,0,0.650602214813519,0,0.180062129805349,0.60281927134286,0.204109497453984,0,0,0,0.215567992932842,0.189106080167819,0.175951124163949,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.827810238914197,0.80275294993896,0.820481806145422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340439605753788,10.2634823597847,8.92574918101006,4.92975180572662,4.61084607469911,3.0322698992352,2.79733335023606,3.34911444026059,0,0,0,0,0,0,0,0,0,0.927126510052548,0,0,0,0,0,0,0.169978429993855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.337912250981556,0.117357238645754,0.13020438484395,0,0,0.288030006257865,0,0.202725215290164,0,0,0,0.198681354781265,0,0,0,0.0762068066549998,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.3492355185943,1.99512436700516,3.24393850932855,2.43106717068294,1.46729213839588,1.47074806760011,2.22246727801615,0.824140228955577,2.88827288632634,1.51618327058278,0.50695859978048,2.26351609663291,1.87283014939765,1.15245274328765,1.66562859971278,1.90517476513229,1.27472758539341,0.77163688185482,0.412085900803307,1.32479028120958,2.05721551431249,1.4198064492747,1.43061713968393,0.436039249896986,1.31753132581463,1.69229215783353,1.82927972872773,1.05227884575137,1.90125759384206,0.561142271657738,1.66089025373844,1.18205378850676,2.45538625901814,1.23949472948773,1.15743966588685,3.74715866906919,1.63752125911786,0.214871054048298,0.765153328275374,0.220591419119515,0 | ||
|short_description=p1@Sox14 | |short_description=p1@Sox14 | ||
}} | }} |
Latest revision as of 07:50, 27 September 2015
Short description: | p1@Sox14 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Sox14_5end |
Coexpression cluster: | MCL_coexpression_mm9:224 |
Association with transcript: | 0bp_to_NM_011440, uc012gzb.1_5end |
EntrezGene: | Sox14 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.29e-19 | 23 |
neuroblast (sensu Vertebrata) | 3.29e-19 | 23 |
neuron | 6.86e-12 | 33 |
neuronal stem cell | 6.86e-12 | 33 |
neuroblast | 6.86e-12 | 33 |
electrically signaling cell | 6.86e-12 | 33 |
electrically responsive cell | 2.45e-09 | 39 |
electrically active cell | 2.45e-09 | 39 |
neural cell | 4.79e-08 | 43 |
ectodermal cell | 9.21e-08 | 44 |
neurectodermal cell | 9.21e-08 | 44 |
granule cell | 7.45e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
diencephalon | 2.93e-13 | 10 |
future diencephalon | 2.93e-13 | 10 |
regional part of nervous system | 4.79e-13 | 54 |
central nervous system | 3.20e-11 | 73 |
nervous system | 1.01e-10 | 75 |
pituitary gland | 1.54e-10 | 8 |
gland of diencephalon | 1.54e-10 | 8 |
neuroendocrine gland | 1.54e-10 | 8 |
neural tube | 7.20e-10 | 52 |
neural rod | 7.20e-10 | 52 |
future spinal cord | 7.20e-10 | 52 |
neural keel | 7.20e-10 | 52 |
regional part of spinal cord | 4.55e-09 | 5 |
gray matter of spinal cord | 4.55e-09 | 5 |
anterior neural tube | 1.42e-07 | 40 |
basal ganglion | 1.75e-07 | 8 |
nuclear complex of neuraxis | 1.75e-07 | 8 |
aggregate regional part of brain | 1.75e-07 | 8 |
collection of basal ganglia | 1.75e-07 | 8 |
cerebral subcortex | 1.75e-07 | 8 |
spinal cord | 1.87e-07 | 6 |
dorsal region element | 1.87e-07 | 6 |
dorsum | 1.87e-07 | 6 |
regional part of midbrain | 5.49e-07 | 4 |
midbrain | 5.49e-07 | 4 |
presumptive midbrain | 5.49e-07 | 4 |
midbrain neural tube | 5.49e-07 | 4 |
neurectoderm | 5.55e-07 | 64 |
neural plate | 5.55e-07 | 64 |
presumptive neural plate | 5.55e-07 | 64 |
ectoderm-derived structure | 5.95e-07 | 95 |
ectoderm | 5.95e-07 | 95 |
presumptive ectoderm | 5.95e-07 | 95 |