FFCP PHASE1:Mm9::chr8:109555195..109555250,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=116733 | |EntrezGene=116733 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=60 | |||
|TSSclassifier=NA | |||
|UniProt=Q8VEJ9 | |UniProt=Q8VEJ9 | ||
|association_with_transcript=0bp_to_NM_126165,uc009ngv.1_5end | |association_with_transcript=0bp_to_NM_126165,uc009ngv.1_5end | ||
|cluster_id=chr8:109555195..109555250,+ | |||
|description=CAGE_peak_1_at_Vps4a_5end | |description=CAGE_peak_1_at_Vps4a_5end | ||
|id=chr8:109555195..109555250,+ | |id=chr8:109555195..109555250,+ | ||
|ontology_enrichment_celltype=CL:0000117!1.50e-13!23;CL:0000337!1.50e-13!23;CL:0002319!3.02e-11!43;CL:0000221!1.48e-10!44;CL:0000133!1.48e-10!44;CL:0000540!1.56e-10!33;CL:0000047!1.56e-10!33;CL:0000031!1.56e-10!33;CL:0000404!1.56e-10!33;CL:0000055!4.08e-10!50;CL:0000393!9.23e-10!39;CL:0000211!9.23e-10!39;CL:0002321!4.70e-07!70;CL:0000220!4.70e-07!70 | |ontology_enrichment_celltype=CL:0000117!1.50e-13!23;CL:0000337!1.50e-13!23;CL:0002319!3.02e-11!43;CL:0000221!1.48e-10!44;CL:0000133!1.48e-10!44;CL:0000540!1.56e-10!33;CL:0000047!1.56e-10!33;CL:0000031!1.56e-10!33;CL:0000404!1.56e-10!33;CL:0000055!4.08e-10!50;CL:0000393!9.23e-10!39;CL:0000211!9.23e-10!39;CL:0002321!4.70e-07!70;CL:0000220!4.70e-07!70 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.50e-13,23;CL:0000337,1.50e-13,23;CL:0002319,3.02e-11,43;CL:0000221,1.48e-10,44;CL:0000133,1.48e-10,44;CL:0000540,1.56e-10,33;CL:0000047,1.56e-10,33;CL:0000031,1.56e-10,33;CL:0000404,1.56e-10,33;CL:0000393,9.23e-10,39;CL:0000211,9.23e-10,39;CL:0002321,4.70e-07,70 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.55e-23!73;UBERON:0005743!1.55e-23!73;UBERON:0000073!2.10e-23!75;UBERON:0001016!2.10e-23!75;UBERON:0001049!4.15e-21!52;UBERON:0005068!4.15e-21!52;UBERON:0006241!4.15e-21!52;UBERON:0007135!4.15e-21!52;UBERON:0004121!4.72e-20!102;UBERON:0000924!4.72e-20!102;UBERON:0006601!4.72e-20!102;UBERON:0000955!5.69e-20!50;UBERON:0006238!5.69e-20!50;UBERON:0002020!1.20e-19!34;UBERON:0002616!1.65e-19!49;UBERON:0002346!8.57e-19!71;UBERON:0003075!8.57e-19!71;UBERON:0007284!8.57e-19!71;UBERON:0000033!4.68e-17!63;UBERON:0002791!1.55e-16!29;UBERON:0003528!1.55e-16!29;UBERON:0001893!1.55e-16!29;UBERON:0003080!1.02e-15!40;UBERON:0002780!3.12e-15!39;UBERON:0001890!3.12e-15!39;UBERON:0006240!3.12e-15!39;UBERON:0003056!3.44e-14!49;UBERON:0000956!3.82e-12!21;UBERON:0001869!3.82e-12!21;UBERON:0000203!3.82e-12!21;UBERON:0002619!1.50e-10!17;UBERON:0007811!2.49e-08!86;UBERON:0002021!9.16e-08!10;UBERON:0000411!9.16e-08!10;UBERON:0001950!9.16e-08!10;UBERON:0000153!6.89e-07!94 | |ontology_enrichment_uberon=UBERON:0001017!1.55e-23!73;UBERON:0005743!1.55e-23!73;UBERON:0000073!2.10e-23!75;UBERON:0001016!2.10e-23!75;UBERON:0001049!4.15e-21!52;UBERON:0005068!4.15e-21!52;UBERON:0006241!4.15e-21!52;UBERON:0007135!4.15e-21!52;UBERON:0004121!4.72e-20!102;UBERON:0000924!4.72e-20!102;UBERON:0006601!4.72e-20!102;UBERON:0000955!5.69e-20!50;UBERON:0006238!5.69e-20!50;UBERON:0002020!1.20e-19!34;UBERON:0002616!1.65e-19!49;UBERON:0002346!8.57e-19!71;UBERON:0003075!8.57e-19!71;UBERON:0007284!8.57e-19!71;UBERON:0000033!4.68e-17!63;UBERON:0002791!1.55e-16!29;UBERON:0003528!1.55e-16!29;UBERON:0001893!1.55e-16!29;UBERON:0003080!1.02e-15!40;UBERON:0002780!3.12e-15!39;UBERON:0001890!3.12e-15!39;UBERON:0006240!3.12e-15!39;UBERON:0003056!3.44e-14!49;UBERON:0000956!3.82e-12!21;UBERON:0001869!3.82e-12!21;UBERON:0000203!3.82e-12!21;UBERON:0002619!1.50e-10!17;UBERON:0007811!2.49e-08!86;UBERON:0002021!9.16e-08!10;UBERON:0000411!9.16e-08!10;UBERON:0001950!9.16e-08!10;UBERON:0000153!6.89e-07!94 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.55e-23,73;UBERON:0001016,2.10e-23,75;UBERON:0000073,1.05e-22,54;UBERON:0001049,4.15e-21,52;UBERON:0005068,4.15e-21,52;UBERON:0006241,4.15e-21,52;UBERON:0007135,4.15e-21,52;UBERON:0004121,8.17e-20,95;UBERON:0000924,8.17e-20,95;UBERON:0006601,8.17e-20,95;UBERON:0002020,1.20e-19,34;UBERON:0002346,5.61e-19,64;UBERON:0003075,5.61e-19,64;UBERON:0007284,5.61e-19,64;UBERON:0000955,6.17e-18,47;UBERON:0006238,6.17e-18,47;UBERON:0002616,1.75e-17,46;UBERON:0010314,3.30e-17,92;UBERON:0003528,1.55e-16,29;UBERON:0002791,1.55e-16,29;UBERON:0001893,1.55e-16,29;UBERON:0003080,1.02e-15,40;UBERON:0010371,1.42e-15,73;UBERON:0002780,3.12e-15,39;UBERON:0001890,3.12e-15,39;UBERON:0006240,3.12e-15,39;UBERON:0003056,3.44e-14,49;UBERON:0000956,3.82e-12,21;UBERON:0001869,3.82e-12,21;UBERON:0000203,3.82e-12,21;UBERON:0002619,1.50e-10,17;UBERON:0002021,9.16e-08,10;UBERON:0000411,9.16e-08,10;UBERON:0001950,9.16e-08,10 | |||
|phase1_expression=54.4506080156299,91.780532209152,98.2798357081398,138.528608778528,134.240055625621,55.0644011870999,63.0754129607919,56.9433856377351,43.92608131132,54.0689055803805,41.4347483105722,38.1310919997708,63.3442700745461,52.8019230610744,51.2989033196121,43.5321824888126,48.9693314689703,52.8399126975048,52.9261713718152,59.8389409035223,108.770368103218,33.5603415058992,36.8291702685899,58.2372418968,52.9935439265163,68.3336037296874,58.1528694814751,57.0998766617606,77.3395317187442,63.2595625697426,51.4414784720307,44.4521471421742,33.8285633171514,15.8481681015439,48.5270721182141,35.9066833974343,38.179669621063,68.220655810116,66.413504284523,58.6346593250654,69.9995470756907,71.0367304356784,63.6018562470811,59.4232980844725,51.3981041282939,45.8866880404204,61.0265248591471,82.6315342681892,88.3138454592577,117.435659040867,80.9121516994595,89.1265899062824,47.9858253325126,46.423177088726,58.8164148499312,85.6673921999704,104.298172137707,99.0090417172689,125.84083865467,188.320788620844,178.106624385236,55.2316587272685,87.1508900188917,55.343832612806,56.3653826663175,53.9964887359036,63.8148235404202,64.5486752940212,89.4841354222162,116.510124780249,107.476055250556,173.675798517513,186.854785645065,115.998786856561,104.950790764969,166.378600376414,225.737556048747,175.059340514792,184.635052974005,142.173418173149,132.748570867096,153.148530943687,169.74326339284,144.06722816811,135.684844025807,175.304008356832,155.327503751821,133.089204319265,64.8973476865387,68.7701196971748,78.8431409268564,50.7650087419018,51.677821361789,41.0174425644741,44.1847963864415,57.7954684355563,76.6826533919365,63.0592193538814,66.7650031829373,79.1480646903162,48.4501364031781,55.1803852881567,112.114305470924,156.434674693733,53.6897781707811,49.6585336331193,52.5745422815375,66.7975696356501,60.5914647734382,77.0414701746441,54.8213632580989,78.2476279262203,69.1846491768175,65.7150712809434,66.907974360216,67.8599593180247,68.2258110946872,83.7230276566288,51.3074120130927,61.9567035298577,65.8107725011973,80.4892920204469,82.0123749359738,110.671141270365,103.885566579474,66.9297484646509,41.6956633280603,32.9946502046374,40.9166131175268,127.621624772909,143.655189285049,137.088898155135,144.795658720166,137.319200586387,131.322044161642,138.391797396797,57.4374012115784,60.7106016577254,40.435641349388,76.811277398563,54.910826930261,52.1877777063984,63.0217454318722,64.3509572158503,62.5935792192216,71.615569639231,68.402258928602,92.3571033538286,46.3471184805611,49.3566869238008,51.729630504201,56.5524989663143,68.9557178079483,54.6755901439801,64.2040265592784,52.1469779064452,55.4748417977455,38.3448381600926,34.6679469262623,41.0109029620294,53.706467735671,49.5170669017791,48.7694155305533,55.6842775845153,57.8501673327668,61.3889614141077,63.8490695331094,65.6221224103492,71.583534712364,76.9945406530957,91.2024107390877,94.8837918390407,106.042705685577,96.762827926228,119.23440083586,130.688857721691,94.4997719333662,88.5909398322873,57.5878276445132,51.0920678092965,49.742840070328,42.1518566462786,46.0322550758882,49.8391140414905,59.3161326930639,71.3146473954967,57.3044276064614,54.116160395193,59.0741183970934,52.1315257019448,62.896172513536,65.5174789006868,52.9173443659098,58.152492918352,41.7018621990398,62.5209576485115,59.3494610732935,51.3394201597132,56.6599372633345,69.5243796983926,69.2364389780463,71.3235607468007,50.9898518589896,45.0481785433454,43.2429789249047,35.9779379815766,45.0349469482476,38.1059912408819,36.1568709529616,43.1544206176216,35.6697498905078,30.201755450689,41.6927798929328,34.6091081331708,45.8695379478404,47.9899868099512,35.5206878773386,38.113038187706,68.7281867419769,43.5830247072115,46.7709482388614,61.6174661363933,60.0807035618565,52.764471094172,51.893513713151,66.1503066237938,77.0835854679274,65.1106187567398,60.1144477838726,75.5409880839552,60.4397436530635,66.8278650646584,99.5222473999197,101.16645719028,61.9622984003986,60.9820209333459,132.614787329916,133.504111028519,55.573946482693,109.319911479494,55.2139383978449,64.812831553242,76.2598827974108,57.1135427106599,63.0520247653175,71.3352857587858,65.174522969658,68.6801266091583,67.989497806802,110.855854165523,61.4600568951803,65.8842733568844,56.8475488143981,48.666186276898,94.2490482213736,58.9956945856605,47.1624748865012,52.9980274114074,60.5368880405584,60.2572889970098,59.6969357218591,45.4417161846882,55.9700884064012,76.7969321784033,76.9555842597491,87.6652117609588,71.4923172082955,60.6805886885515,62.7389616346359,58.0853364935615,61.7144013075112,66.7099377831744,65.325961179042,72.7671228383892,47.4036850288695,65.0324457551928,102.986761891667,71.3957475236609,74.5965651335084,54.1006936605558,50.3751291693236,43.8256202319314,59.7535715091194,124.976653555084,47.502104861803,62.12244725693,51.8544676635193,39.9341128849945,48.1163681578009,44.1541874288589,36.2054055886912,41.1457269831554,40.4925923246962,59.189578316937,43.9707031077778,45.13692170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| ||
|short_description=p1@Vps4a | |short_description=p1@Vps4a | ||
}} | }} |
Latest revision as of 08:58, 27 September 2015
Short description: | p1@Vps4a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Vps4a_5end |
Coexpression cluster: | MCL_coexpression_mm9:60 |
Association with transcript: | 0bp_to_NM_126165, uc009ngv.1_5end |
EntrezGene: | Vps4a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.50e-13 | 23 |
neuroblast (sensu Vertebrata) | 1.50e-13 | 23 |
neural cell | 3.02e-11 | 43 |
ectodermal cell | 1.48e-10 | 44 |
neurectodermal cell | 1.48e-10 | 44 |
neuron | 1.56e-10 | 33 |
neuronal stem cell | 1.56e-10 | 33 |
neuroblast | 1.56e-10 | 33 |
electrically signaling cell | 1.56e-10 | 33 |
electrically responsive cell | 9.23e-10 | 39 |
electrically active cell | 9.23e-10 | 39 |
embryonic cell | 4.70e-07 | 70 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.55e-23 | 73 |
nervous system | 2.10e-23 | 75 |
regional part of nervous system | 1.05e-22 | 54 |
neural tube | 4.15e-21 | 52 |
neural rod | 4.15e-21 | 52 |
future spinal cord | 4.15e-21 | 52 |
neural keel | 4.15e-21 | 52 |
ectoderm-derived structure | 8.17e-20 | 95 |
ectoderm | 8.17e-20 | 95 |
presumptive ectoderm | 8.17e-20 | 95 |
gray matter | 1.20e-19 | 34 |
neurectoderm | 5.61e-19 | 64 |
neural plate | 5.61e-19 | 64 |
presumptive neural plate | 5.61e-19 | 64 |
brain | 6.17e-18 | 47 |
future brain | 6.17e-18 | 47 |
regional part of brain | 1.75e-17 | 46 |
structure with developmental contribution from neural crest | 3.30e-17 | 92 |
brain grey matter | 1.55e-16 | 29 |
regional part of telencephalon | 1.55e-16 | 29 |
telencephalon | 1.55e-16 | 29 |
anterior neural tube | 1.02e-15 | 40 |
ecto-epithelium | 1.42e-15 | 73 |
regional part of forebrain | 3.12e-15 | 39 |
forebrain | 3.12e-15 | 39 |
future forebrain | 3.12e-15 | 39 |
pre-chordal neural plate | 3.44e-14 | 49 |
cerebral cortex | 3.82e-12 | 21 |
cerebral hemisphere | 3.82e-12 | 21 |
pallium | 3.82e-12 | 21 |
regional part of cerebral cortex | 1.50e-10 | 17 |
occipital lobe | 9.16e-08 | 10 |
visual cortex | 9.16e-08 | 10 |
neocortex | 9.16e-08 | 10 |