FFCP PHASE1:Mm9::chr8:12395603..12395621,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=20664 | |EntrezGene=20664 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=184 | |MCL_coexpression_id=184 | ||
|TSSclassifier=NA | |||
|UniProt=Q80XF2 | |UniProt=Q80XF2 | ||
|association_with_transcript=84bp_to_NM_009233,uc009kwa.2_5end | |association_with_transcript=84bp_to_NM_009233,uc009kwa.2_5end | ||
|cluster_id=chr8:12395603..12395621,+ | |||
|description=CAGE_peak_1_at_Sox1_5end | |description=CAGE_peak_1_at_Sox1_5end | ||
|id=chr8:12395603..12395621,+ | |id=chr8:12395603..12395621,+ | ||
|ontology_enrichment_celltype=CL:0000117!2.16e-17!23;CL:0000337!2.16e-17!23;CL:0002319!6.36e-17!43;CL:0000221!3.22e-16!44;CL:0000133!3.22e-16!44;CL:0000540!2.09e-13!33;CL:0000047!2.09e-13!33;CL:0000031!2.09e-13!33;CL:0000404!2.09e-13!33;CL:0000055!1.21e-12!50;CL:0000393!9.09e-10!39;CL:0000211!9.09e-10!39;CL:0002609!4.33e-07!6 | |ontology_enrichment_celltype=CL:0000117!2.16e-17!23;CL:0000337!2.16e-17!23;CL:0002319!6.36e-17!43;CL:0000221!3.22e-16!44;CL:0000133!3.22e-16!44;CL:0000540!2.09e-13!33;CL:0000047!2.09e-13!33;CL:0000031!2.09e-13!33;CL:0000404!2.09e-13!33;CL:0000055!1.21e-12!50;CL:0000393!9.09e-10!39;CL:0000211!9.09e-10!39;CL:0002609!4.33e-07!6 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.24e-19,23;CL:0000337,3.24e-19,23;CL:0002319,9.50e-16,43;CL:0000221,3.99e-15,44;CL:0000133,3.99e-15,44;CL:0000540,1.74e-12,33;CL:0000047,1.74e-12,33;CL:0000031,1.74e-12,33;CL:0000404,1.74e-12,33;CL:0000393,2.96e-09,39;CL:0000211,2.96e-09,39;CL:0002609,9.93e-08,6 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.10e-36!73;UBERON:0005743!2.10e-36!73;UBERON:0000073!1.18e-35!75;UBERON:0001016!1.18e-35!75;UBERON:0004121!9.28e-34!102;UBERON:0000924!9.28e-34!102;UBERON:0006601!9.28e-34!102;UBERON:0000033!1.03e-33!63;UBERON:0002346!1.87e-32!71;UBERON:0003075!1.87e-32!71;UBERON:0007284!1.87e-32!71;UBERON:0003056!4.33e-31!49;UBERON:0000955!1.70e-30!50;UBERON:0006238!1.70e-30!50;UBERON:0001049!3.99e-30!52;UBERON:0005068!3.99e-30!52;UBERON:0006241!3.99e-30!52;UBERON:0007135!3.99e-30!52;UBERON:0002616!1.38e-29!49;UBERON:0003080!2.63e-24!40;UBERON:0002780!1.51e-23!39;UBERON:0001890!1.51e-23!39;UBERON:0006240!1.51e-23!39;UBERON:0002020!9.52e-21!34;UBERON:0007811!6.59e-20!86;UBERON:0002791!9.11e-19!29;UBERON:0003528!9.11e-19!29;UBERON:0001893!9.11e-19!29;UBERON:0000153!2.42e-16!94;UBERON:0000956!7.94e-13!21;UBERON:0001869!7.94e-13!21;UBERON:0000203!7.94e-13!21;UBERON:0002619!1.07e-09!17;UBERON:0000970!2.27e-07!9;UBERON:0000019!2.27e-07!9;UBERON:0000047!2.27e-07!9;UBERON:0004088!2.27e-07!9;UBERON:0002104!2.27e-07!9;UBERON:0001456!2.27e-07!9;UBERON:0003072!2.27e-07!9;UBERON:0003071!2.27e-07!9;UBERON:0004128!2.27e-07!9;UBERON:0002420!3.30e-07!8;UBERON:0007245!3.30e-07!8;UBERON:0010009!3.30e-07!8;UBERON:0010011!3.30e-07!8;UBERON:0000454!3.30e-07!8 | |ontology_enrichment_uberon=UBERON:0001017!2.10e-36!73;UBERON:0005743!2.10e-36!73;UBERON:0000073!1.18e-35!75;UBERON:0001016!1.18e-35!75;UBERON:0004121!9.28e-34!102;UBERON:0000924!9.28e-34!102;UBERON:0006601!9.28e-34!102;UBERON:0000033!1.03e-33!63;UBERON:0002346!1.87e-32!71;UBERON:0003075!1.87e-32!71;UBERON:0007284!1.87e-32!71;UBERON:0003056!4.33e-31!49;UBERON:0000955!1.70e-30!50;UBERON:0006238!1.70e-30!50;UBERON:0001049!3.99e-30!52;UBERON:0005068!3.99e-30!52;UBERON:0006241!3.99e-30!52;UBERON:0007135!3.99e-30!52;UBERON:0002616!1.38e-29!49;UBERON:0003080!2.63e-24!40;UBERON:0002780!1.51e-23!39;UBERON:0001890!1.51e-23!39;UBERON:0006240!1.51e-23!39;UBERON:0002020!9.52e-21!34;UBERON:0007811!6.59e-20!86;UBERON:0002791!9.11e-19!29;UBERON:0003528!9.11e-19!29;UBERON:0001893!9.11e-19!29;UBERON:0000153!2.42e-16!94;UBERON:0000956!7.94e-13!21;UBERON:0001869!7.94e-13!21;UBERON:0000203!7.94e-13!21;UBERON:0002619!1.07e-09!17;UBERON:0000970!2.27e-07!9;UBERON:0000019!2.27e-07!9;UBERON:0000047!2.27e-07!9;UBERON:0004088!2.27e-07!9;UBERON:0002104!2.27e-07!9;UBERON:0001456!2.27e-07!9;UBERON:0003072!2.27e-07!9;UBERON:0003071!2.27e-07!9;UBERON:0004128!2.27e-07!9;UBERON:0002420!3.30e-07!8;UBERON:0007245!3.30e-07!8;UBERON:0010009!3.30e-07!8;UBERON:0010011!3.30e-07!8;UBERON:0000454!3.30e-07!8 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,8.02e-40,64;UBERON:0003075,8.02e-40,64;UBERON:0007284,8.02e-40,64;UBERON:0001017,9.59e-38,73;UBERON:0004121,2.66e-36,95;UBERON:0000924,2.66e-36,95;UBERON:0006601,2.66e-36,95;UBERON:0001016,3.97e-36,75;UBERON:0000073,1.43e-35,54;UBERON:0003056,1.33e-34,49;UBERON:0001049,1.30e-33,52;UBERON:0005068,1.30e-33,52;UBERON:0006241,1.30e-33,52;UBERON:0007135,1.30e-33,52;UBERON:0010371,3.19e-32,73;UBERON:0000955,2.22e-31,47;UBERON:0006238,2.22e-31,47;UBERON:0002616,2.20e-30,46;UBERON:0003080,5.04e-27,40;UBERON:0002780,3.55e-26,39;UBERON:0001890,3.55e-26,39;UBERON:0006240,3.55e-26,39;UBERON:0002020,5.82e-23,34;UBERON:0010314,3.20e-21,92;UBERON:0003528,9.46e-21,29;UBERON:0002791,9.46e-21,29;UBERON:0001893,9.46e-21,29;UBERON:0000956,4.01e-14,21;UBERON:0001869,4.01e-14,21;UBERON:0000203,4.01e-14,21;UBERON:0002619,1.23e-10,17;UBERON:0000970,4.83e-08,9;UBERON:0000019,4.83e-08,9;UBERON:0000047,4.83e-08,9;UBERON:0010312,4.83e-08,9;UBERON:0004088,4.83e-08,9;UBERON:0002104,4.83e-08,9;UBERON:0001456,4.83e-08,9;UBERON:0003072,4.83e-08,9;UBERON:0004128,4.83e-08,9;UBERON:0003071,4.83e-08,9;UBERON:0002420,7.33e-08,8;UBERON:0007245,7.33e-08,8;UBERON:0010009,7.33e-08,8;UBERON:0010011,7.33e-08,8;UBERON:0000454,7.33e-08,8;UBERON:0001954,2.70e-07,7;UBERON:0003022,2.70e-07,7;UBERON:0002421,2.70e-07,7;UBERON:0000349,2.70e-07,7;UBERON:0002600,2.70e-07,7;UBERON:0003076,5.60e-07,12;UBERON:0003057,5.60e-07,12 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44573593256819,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,47.7475092473178,3.95435128922049,3.4997381833371,8.81914456239784,38.8131923785423,0,0,0,0,0,0,19.4223802425214,20.6306481916093,14.5781222806421,2.37191172448392,0,0,0,0,9.28760342607055,32.2743376470106,36.8098123695096,33.4814727062593,37.2275181591946,1.42825492201902,1.76694832761291,94.1954245962997,122.778048374361,80.8912532216818,9.91042928994498,10.4703617229854,8.60196586234964,32.3121404938975,21.1336456721566,21.3574481928272,5.58365998002762,3.93933827022176,6.26472815884921,3.24091444021034,4.41352210477219,4.65998614563251,0.075726193333184,0,0,0,0,0,0,0,0.280888840263504,0,0,0,0,0,0,0,0,0,0,0.34255163915718,0,0,0.346970653532272,0,0,0.150722640552623,0.117588707135705,0,0,0,0,0,0,0,0,13.1751358655196,13.1951425292477,0,0,0,0,9.58660092190865,8.23501085073528,48.5025799155657,3.99795936442236,2.55715457330331,16.8308316093244,8.4365456795234,0,0,0,1.47309299120532,9.49879233627737,10.1156925950728,18.3663372401456,10.7000420663358,17.2132342852859,11.2740073850668,9.27647073141315,15.2634988736019,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.30869845692382,26.034866931959,0,0,0,0,0,0,0,0,0,0,0,0.397912944082302,0,0,0.216138049874694,0,0.379335801906163,0,0,0,0,0,0,0,0,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.45872005958493,4.92289083687253,0,0,0,0,1.29254038639679,0.238968797952552,0.445597348164788,1.69845918473299,0,0,0.395287777946524,17.9939937196212,0,0,0,0,0,0,0,0,0,0,0.258428293168221,0,0,0,0,0,0,17.6459872150684,21.2148241403717,8.14480733120051,3.72414490648775,3.0322698992352,1.97458824722545,8.22055362609418,0.23467170806371,0.21183207086382,0,0,0.161464426695906,0,0,0,0,4.45020724825223,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0826534557253359,0,0,0,0,0,0,0,0.129159823477731,0,0,0,0,0,0,0,0.202725215290164,0,0,0,0,0,0,0,0,0,0.0974578807397524,0,0,0,0,0,0,0,0,0,0,0,3.3885110557024,2.76195141904306,1.71868654031819,2.749650917499,2.74033007908257,1.5107877947794,2.02506750069542,3.15224842256954,2.71885445390523,2.5888015587591,14.2188666190322,7.98049746802062,4.43907374960749,3.16038732188782,4.61148957781561,3.30918315210025,2.889207461421,2.26638562962784,3.53011130550997,2.27427490587418,2.5347929989024,2.64076877940507,2.06011316433741,3.20125762024346,2.64203157195821,2.85776214769844,2.66533949673168,3.8581844092741,3.29668720642645,2.06078488188156,3.42869252385415,2.12970967391205,2.62279808942053,2.32554266611726,1.97629698872194,2.70766745253365,1.64635175585495,1.31534855718921,2.8518863907631,1.68342681497322,3.44041552560105,2.46261205938909,2.04615521584845,2.63392630016142,1.54325288784913,8.24374907195222,2.57324769289949,1.93383948643468,0,0,0 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| ||
|short_description=p1@Sox1 | |short_description=p1@Sox1 | ||
}} | }} |
Latest revision as of 15:44, 1 October 2015
Short description: | p1@Sox1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Sox1_5end |
Coexpression cluster: | MCL_coexpression_mm9:184 |
Association with transcript: | 84bp_to_NM_009233, uc009kwa.2_5end |
EntrezGene: | Sox1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.24e-19 | 23 |
neuroblast (sensu Vertebrata) | 3.24e-19 | 23 |
neural cell | 9.50e-16 | 43 |
ectodermal cell | 3.99e-15 | 44 |
neurectodermal cell | 3.99e-15 | 44 |
neuron | 1.74e-12 | 33 |
neuronal stem cell | 1.74e-12 | 33 |
neuroblast | 1.74e-12 | 33 |
electrically signaling cell | 1.74e-12 | 33 |
electrically responsive cell | 2.96e-09 | 39 |
electrically active cell | 2.96e-09 | 39 |
neuron of cerebral cortex | 9.93e-08 | 6 |