FFCP PHASE1:Mm9::chr19:17211234..17211271,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 mm9::chr19:17211234..17211271,+ to FFCP PHASE1:Mm9::chr19:17211234..17211271,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=353211 | |EntrezGene=353211 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=39 | |||
|TSSclassifier=NA | |||
|UniProt=Q52KR3,Q3TQH7 | |UniProt=Q52KR3,Q3TQH7 | ||
|association_with_transcript=0bp_to_ENSMUST00000044176,ENSMUST00000099594,uc008gxi.1,uc008gxj.2,uc008gxk.2_5end | |||
|cluster_id=chr19:17211234..17211271,+ | |||
|description=CAGE_peak_1_at_Prune2_5end | |||
|id=chr19:17211234..17211271,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!1.95e-20!102;UBERON:0000924!1.95e-20!102;UBERON:0006601!1.95e-20!102;UBERON:0000073!2.63e-20!75;UBERON:0001016!2.63e-20!75;UBERON:0001017!3.30e-20!73;UBERON:0005743!3.30e-20!73;UBERON:0000033!3.42e-20!63;UBERON:0002346!1.68e-18!71;UBERON:0003075!1.68e-18!71;UBERON:0007284!1.68e-18!71;UBERON:0001049!7.30e-18!52;UBERON:0005068!7.30e-18!52;UBERON:0006241!7.30e-18!52;UBERON:0007135!7.30e-18!52;UBERON:0000955!1.31e-17!50;UBERON:0006238!1.31e-17!50;UBERON:0002616!6.47e-17!49;UBERON:0003056!4.82e-16!49;UBERON:0003080!2.84e-13!40;UBERON:0002780!1.27e-12!39;UBERON:0001890!1.27e-12!39;UBERON:0006240!1.27e-12!39;UBERON:0002020!2.03e-10!34;UBERON:0002791!2.54e-08!29;UBERON:0003528!2.54e-08!29;UBERON:0001893!2.54e-08!29;UBERON:0004111!1.39e-07!122;UBERON:0000025!2.25e-07!114;UBERON:0002021!4.52e-07!10;UBERON:0000411!4.52e-07!10;UBERON:0001950!4.52e-07!10;UBERON:0007811!6.66e-07!86;UBERON:0000468!9.06e-07!333 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,2.91e-23,92;UBERON:0001017,6.87e-20,73;UBERON:0001016,1.20e-19,75;UBERON:0004121,2.46e-19,95;UBERON:0000924,2.46e-19,95;UBERON:0006601,2.46e-19,95;UBERON:0000073,2.74e-19,54;UBERON:0002346,8.38e-19,64;UBERON:0003075,8.38e-19,64;UBERON:0007284,8.38e-19,64;UBERON:0001049,1.02e-17,52;UBERON:0005068,1.02e-17,52;UBERON:0006241,1.02e-17,52;UBERON:0007135,1.02e-17,52;UBERON:0010371,5.48e-17,73;UBERON:0003056,2.21e-16,49;UBERON:0000955,2.98e-15,47;UBERON:0006238,2.98e-15,47;UBERON:0002616,1.58e-14,46;UBERON:0003080,2.76e-13,40;UBERON:0002780,1.40e-12,39;UBERON:0001890,1.40e-12,39;UBERON:0006240,1.40e-12,39;UBERON:0002020,3.61e-10,34;UBERON:0003528,6.80e-08,29;UBERON:0002791,6.80e-08,29;UBERON:0001893,6.80e-08,29;UBERON:0002021,8.80e-08,10;UBERON:0000411,8.80e-08,10;UBERON:0001950,8.80e-08,10;UBERON:0000025,2.47e-07,114;UBERON:0004111,3.94e-07,122 | |||
|phase1_expression=8.16759120234449,0,0.454999239389536,0,0,1.17515490338323,2.33612640595526,0,0,0,0,0,0,0,0,0,0,0.157731082679119,0.137114433605739,0,15.6479653877968,0,0,0,0.68822784320151,0,0.86152399231815,0.646413698057667,1.52018735565099,0.504060259519861,1.33038306393183,0,0,0,0.577703239502549,0.498703936075477,0,0,0.7813353445238,0,0,0,0,0.881277725829041,0.202753862439029,0.550640256485045,0.782391344348039,0.65407546914134,0.219686182734472,0.777719596297134,1.53985063787899,2.87505128729943,0,0,0,0,1.71920063963254,1.03134418455488,3.84401275633236,4.23192783417626,1.90149421051854,0.338844532069132,0,4.04954872776629,9.88866362566974,2.8419204597844,2.39680088414724,3.07374644257244,0.622137673850866,0.945041568321835,0.210324961351382,9.42648248532552,8.39300455616131,1.46988959057945,1.15014565221884,0.919218786610021,60.5637345496638,74.1863434274941,69.2765464985658,4.2203612073662,4.48289453651807,5.2091337055676,40.2023518561989,48.9603470727562,62.6472815884921,15.0260578591571,15.0913981647049,6.71038004971082,0.832988126665025,4.53429360640713,1.15945795480671,0,0,0,0,0,2.52799956237153,0,0,0,11.8308472612412,0,2.54805239706646,0,0.216491041011214,0,0.505524445014783,1.94112595522402,5.43769555659061,2.07818994690755,1.73485326766136,1.21786191324856,0.922461989024234,1.3565037649736,2.23418543557839,0.628332956648377,0,2.16899035379867,0.884610551949874,0.485300549842228,0.220841518460394,0.484875253135222,0,143.75537133267,155.409456455584,1.27728527604296,0.239630249011841,0,0.508280908292259,77.8911324905078,48.4950638987744,6.53402630986895,65.1841200721037,48.8416523500931,71.6868753730482,55.3242707061054,1.83310854930569,2.11491850037158,10.867078612648,11.995185785529,2.47228841629137,2.5289231487682,1.26043490863744,3.16480117455002,7.55205140579739,9.09607414022434,7.49613796477831,22.2484898835553,0.431135985865684,0.378212160335639,0.703804496655795,0.219195732427575,0.278047249225598,0.696504333044333,1.4404749548556,0.59710280045548,0,0,0.568326998791185,9.94203708170409,11.9608290590359,9.7233513188948,10.180023630164,12.9864392953287,12.0328348052155,12.556833016522,9.65784245038629,9.45799273174073,4.60767579757745,3.11918181750281,2.10778904819225,2.48539978623065,0.878200461164203,2.28150911892632,42.899149507082,4.42489833230923,0.330418782983798,1.32225283331772,1.2797295032114,0.928946687441754,0.902072229254653,1.00841762311671,0.889512175379481,0.760902504450237,0.949058123089023,1.15289268306808,2.01068167040216,3.18330355265841,1.55971269695296,1.79763881730844,1.29682829924817,0.398282546508734,0.569003702859245,1.5994791765362,1.1270773567308,0.407302655690628,2.13347735884388,1.54298803758701,1.83385957660346,1.03327103585722,2.511979645462,0.740382983530803,0.296452627087149,0.500535317148282,0.393117990226406,0.674586337154561,0.202860121388503,0,0,0,0.486405680325106,0.274561413188081,1.43768206527355,0.372140947668503,0,0.252578877947112,0,0,0.739012760666419,0.757965647081939,0.977789858652155,1.52770577197669,0.234690248288502,0.502518772325447,0,0.390267295715598,0.315270288212382,0,0.478364305972461,0.163863314715738,0.518054945597687,0.578596234326046,10.5553898757491,14.1415477792864,0.491764273019036,1.10374698521893,45.2752663765573,44.423229218445,0.163934945376675,0.252470927204373,0.631016438832513,0.390438744296638,0.215423397732799,0.716906393857656,1.78238939265915,1.41538265394416,1.21443210502468,1.75353514746787,1.58115111178609,126.600598670192,2.83880170416537,1.42452482933804,2.28041743095006,5.27904393512113,2.65490276679926,2.6705869977048,4.23252979750651,4.71512699389745,2.36241514304618,3.3817866273832,5.16856586336442,6.90714086007261,4.9909632973861,2.52829406348653,1.05418608574999,1.03135543248187,52.7681388918371,3.24109969256358,3.23396709456886,6.85878512101095,8.33499098118686,9.63191615051181,10.0374902567294,8.82948352432338,0,0,0.882113592219848,1.6488625294148,1.13025098687134,0.784068024066026,0.596861720015682,0.656563598980245,0.291480836629851,40.0518652342701,0.170870880797853,0.412773735926445,0.555583582109135,0,0,0.686334519619568,1.5298058699447,1.53946597556024,0.690999869022119,0.954670618015114,0.949007980743406,1.21991680276109,0.756037385752609,0.418176592028937,0.655087691238533,1.21377911746339,0.661227645802687,1.83229159388821,1.94422459937689,0,0,0.448549638131936,0.165458490457098,0.388902376688095,0,0.337912250981556,0.117357238645754,0.13020438484395,0.524296722128554,0,0,0,0,0.102710957164827,0.129920822977795,0,0,0.120195449519969,0,0.100966449948148,0.228620419965,0,0.38983152295901,0.288635524920988,0,0.906921534460845,0,0,0,3.09103350451505,1.87682475451182,1.09890974560359,0.857473516316263,1.00314420807073,20.8958181768315,26.6988637174163,18.9055519435001,32.995811009988,39.0497036269266,58.9207239963966,38.4762825132129,47.7340475417674,59.3616555769308,37.7965027578829,0.726511433089237,0.798049746802062,0.682934423016537,0.972426868273176,1.04806581313991,1.47074806760011,1.5557270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| |phase1_expression=8.16759120234449,0,0.454999239389536,0,0,1.17515490338323,2.33612640595526,0,0,0,0,0,0,0,0,0,0,0.157731082679119,0.137114433605739,0,15.6479653877968,0,0,0,0.68822784320151,0,0.86152399231815,0.646413698057667,1.52018735565099,0.504060259519861,1.33038306393183,0,0,0,0.577703239502549,0.498703936075477,0,0,0.7813353445238,0,0,0,0,0.881277725829041,0.202753862439029,0.550640256485045,0.782391344348039,0.65407546914134,0.219686182734472,0.777719596297134,1.53985063787899,2.87505128729943,0,0,0,0,1.71920063963254,1.03134418455488,3.84401275633236,4.23192783417626,1.90149421051854,0.338844532069132,0,4.04954872776629,9.88866362566974,2.8419204597844,2.39680088414724,3.07374644257244,0.622137673850866,0.945041568321835,0.210324961351382,9.42648248532552,8.39300455616131,1.46988959057945,1.15014565221884,0.919218786610021,60.5637345496638,74.1863434274941,69.2765464985658,4.2203612073662,4.48289453651807,5.2091337055676,40.2023518561989,48.9603470727562,62.6472815884921,15.0260578591571,15.0913981647049,6.71038004971082,0.832988126665025,4.53429360640713,1.15945795480671,0,0,0,0,0,2.52799956237153,0,0,0,11.8308472612412,0,2.54805239706646,0,0.216491041011214,0,0.505524445014783,1.94112595522402,5.43769555659061,2.07818994690755,1.73485326766136,1.21786191324856,0.922461989024234,1.3565037649736,2.23418543557839,0.628332956648377,0,2.16899035379867,0.884610551949874,0.485300549842228,0.220841518460394,0.484875253135222,0,143.75537133267,155.409456455584,1.27728527604296,0.239630249011841,0,0.508280908292259,77.8911324905078,48.4950638987744,6.53402630986895,65.1841200721037,48.8416523500931,71.6868753730482,55.3242707061054,1.83310854930569,2.11491850037158,10.867078612648,11.995185785529,2.47228841629137,2.5289231487682,1.26043490863744,3.16480117455002,7.55205140579739,9.09607414022434,7.49613796477831,22.2484898835553,0.431135985865684,0.378212160335639,0.703804496655795,0.219195732427575,0.278047249225598,0.696504333044333,1.4404749548556,0.59710280045548,0,0,0.568326998791185,9.94203708170409,11.9608290590359,9.7233513188948,10.180023630164,12.9864392953287,12.0328348052155,12.556833016522,9.65784245038629,9.45799273174073,4.60767579757745,3.11918181750281,2.10778904819225,2.48539978623065,0.878200461164203,2.28150911892632,42.899149507082,4.42489833230923,0.330418782983798,1.32225283331772,1.2797295032114,0.928946687441754,0.902072229254653,1.00841762311671,0.889512175379481,0.760902504450237,0.949058123089023,1.15289268306808,2.01068167040216,3.18330355265841,1.55971269695296,1.79763881730844,1.29682829924817,0.398282546508734,0.569003702859245,1.5994791765362,1.1270773567308,0.407302655690628,2.13347735884388,1.54298803758701,1.83385957660346,1.03327103585722,2.511979645462,0.740382983530803,0.296452627087149,0.500535317148282,0.393117990226406,0.674586337154561,0.202860121388503,0,0,0,0.486405680325106,0.274561413188081,1.43768206527355,0.372140947668503,0,0.252578877947112,0,0,0.739012760666419,0.757965647081939,0.977789858652155,1.52770577197669,0.234690248288502,0.502518772325447,0,0.390267295715598,0.315270288212382,0,0.478364305972461,0.163863314715738,0.518054945597687,0.578596234326046,10.5553898757491,14.1415477792864,0.491764273019036,1.10374698521893,45.2752663765573,44.423229218445,0.163934945376675,0.252470927204373,0.631016438832513,0.390438744296638,0.215423397732799,0.716906393857656,1.78238939265915,1.41538265394416,1.21443210502468,1.75353514746787,1.58115111178609,126.600598670192,2.83880170416537,1.42452482933804,2.28041743095006,5.27904393512113,2.65490276679926,2.6705869977048,4.23252979750651,4.71512699389745,2.36241514304618,3.3817866273832,5.16856586336442,6.90714086007261,4.9909632973861,2.52829406348653,1.05418608574999,1.03135543248187,52.7681388918371,3.24109969256358,3.23396709456886,6.85878512101095,8.33499098118686,9.63191615051181,10.0374902567294,8.82948352432338,0,0,0.882113592219848,1.6488625294148,1.13025098687134,0.784068024066026,0.596861720015682,0.656563598980245,0.291480836629851,40.0518652342701,0.170870880797853,0.412773735926445,0.555583582109135,0,0,0.686334519619568,1.5298058699447,1.53946597556024,0.690999869022119,0.954670618015114,0.949007980743406,1.21991680276109,0.756037385752609,0.418176592028937,0.655087691238533,1.21377911746339,0.661227645802687,1.83229159388821,1.94422459937689,0,0,0.448549638131936,0.165458490457098,0.388902376688095,0,0.337912250981556,0.117357238645754,0.13020438484395,0.524296722128554,0,0,0,0,0.102710957164827,0.129920822977795,0,0,0.120195449519969,0,0.100966449948148,0.228620419965,0,0.38983152295901,0.288635524920988,0,0.906921534460845,0,0,0,3.09103350451505,1.87682475451182,1.09890974560359,0.857473516316263,1.00314420807073,20.8958181768315,26.6988637174163,18.9055519435001,32.995811009988,39.0497036269266,58.9207239963966,38.4762825132129,47.7340475417674,59.3616555769308,37.7965027578829,0.726511433089237,0.798049746802062,0.682934423016537,0.972426868273176,1.04806581313991,1.47074806760011,1.5557270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| ||
|short_description=p1@Prune2 | |||
}} | }} |
Latest revision as of 22:57, 1 October 2015
Short description: | p1@Prune2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Prune2_5end |
Coexpression cluster: | MCL_coexpression_mm9:39 |
Association with transcript: | 0bp_to_ENSMUST00000044176, ENSMUST00000099594, uc008gxi.1, uc008gxj.2, uc008gxk.2_5end |
EntrezGene: | Prune2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
structure with developmental contribution from neural crest | 2.91e-23 | 92 |
central nervous system | 6.87e-20 | 73 |
nervous system | 1.20e-19 | 75 |
ectoderm-derived structure | 2.46e-19 | 95 |
ectoderm | 2.46e-19 | 95 |
presumptive ectoderm | 2.46e-19 | 95 |
regional part of nervous system | 2.74e-19 | 54 |
neurectoderm | 8.38e-19 | 64 |
neural plate | 8.38e-19 | 64 |
presumptive neural plate | 8.38e-19 | 64 |
neural tube | 1.02e-17 | 52 |
neural rod | 1.02e-17 | 52 |
future spinal cord | 1.02e-17 | 52 |
neural keel | 1.02e-17 | 52 |
ecto-epithelium | 5.48e-17 | 73 |
pre-chordal neural plate | 2.21e-16 | 49 |
brain | 2.98e-15 | 47 |
future brain | 2.98e-15 | 47 |
regional part of brain | 1.58e-14 | 46 |
anterior neural tube | 2.76e-13 | 40 |
regional part of forebrain | 1.40e-12 | 39 |
forebrain | 1.40e-12 | 39 |
future forebrain | 1.40e-12 | 39 |
gray matter | 3.61e-10 | 34 |
brain grey matter | 6.80e-08 | 29 |
regional part of telencephalon | 6.80e-08 | 29 |
telencephalon | 6.80e-08 | 29 |
occipital lobe | 8.80e-08 | 10 |
visual cortex | 8.80e-08 | 10 |
neocortex | 8.80e-08 | 10 |
tube | 2.47e-07 | 114 |
anatomical conduit | 3.94e-07 | 122 |