FF:10014-101C5: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005815 | ||
|accession_numbers=CAGE;DRX008638;DRR009510;DRZ000935;DRZ002320;DRZ012285;DRZ013670 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0001155,UBERON:0000160,UBERON:0000479,UBERON:0001007,UBERON:0000064,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0001555,UBERON:0000059,UBERON:0005409 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010014 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/colon%252c%2520adult%252c%2520pool1.CNhs10619.10014-101C5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/colon%252c%2520adult%252c%2520pool1.CNhs10619.10014-101C5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/colon%252c%2520adult%252c%2520pool1.CNhs10619.10014-101C5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/colon%252c%2520adult%252c%2520pool1.CNhs10619.10014-101C5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/colon%252c%2520adult%252c%2520pool1.CNhs10619.10014-101C5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10014-101C5 | |id=FF:10014-101C5 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0010014 | ||
|is_obsolete= | |||
|library_id=CNhs10619 | |||
|library_id_phase_based=2:CNhs10619 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10014 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10014 | |||
|name=colon, adult, pool1 | |name=colon, adult, pool1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10619,LSID656,release008,COMPLETED | |profile_hcage=CNhs10619,LSID656,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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|rna_box=101 | |rna_box=101 | ||
|rna_catalog_number=Cat:AM6000 Lot:0910061 -5 | |rna_catalog_number=Cat:AM6000 Lot:0910061 -5 | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age= | |sample_age= | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.09266383481241e-249!GO:0005737;cytoplasm;1.44697267061578e-185!GO:0044444;cytoplasmic part;1.41905177180377e-131!GO:0043226;organelle;6.35041428598652e-115!GO:0043229;intracellular organelle;1.00286582824969e-114!GO:0043231;intracellular membrane-bound organelle;1.00286582824969e-114!GO:0043227;membrane-bound organelle;1.00286582824969e-114!GO:0005515;protein binding;4.46142026450844e-85!GO:0044422;organelle part;1.98785190214195e-79!GO:0044446;intracellular organelle part;3.21801823745209e-78!GO:0032991;macromolecular complex;6.41820656448926e-51!GO:0005739;mitochondrion;4.07152801880389e-50!GO:0044237;cellular metabolic process;5.16509594114213e-50!GO:0044238;primary metabolic process;6.10108737476506e-49!GO:0031090;organelle membrane;4.57695254804529e-48!GO:0030529;ribonucleoprotein complex;7.64731172293777e-44!GO:0043170;macromolecule metabolic process;4.23202624778284e-40!GO:0043233;organelle lumen;8.83796063560117e-40!GO:0031974;membrane-enclosed lumen;8.83796063560117e-40!GO:0019538;protein metabolic process;7.60279539657402e-38!GO:0003723;RNA binding;1.38634560735733e-37!GO:0044429;mitochondrial part;1.87607570740054e-36!GO:0033036;macromolecule localization;1.63505715697672e-35!GO:0044260;cellular macromolecule metabolic process;1.54376173497707e-33!GO:0008104;protein localization;1.66297772269291e-33!GO:0016043;cellular component organization and biogenesis;2.07058037884024e-33!GO:0031967;organelle envelope;2.1546630220903e-33!GO:0015031;protein transport;3.12726700563973e-33!GO:0031975;envelope;3.97497934201146e-33!GO:0045184;establishment of protein localization;4.87429275888152e-33!GO:0005829;cytosol;1.27297393752404e-32!GO:0044428;nuclear part;1.67372989137379e-32!GO:0044267;cellular protein metabolic process;3.01579021746712e-32!GO:0005840;ribosome;4.8356570298847e-28!GO:0009058;biosynthetic process;2.98193402445279e-27!GO:0043234;protein complex;2.22582066938458e-26!GO:0005740;mitochondrial envelope;2.69311223899096e-26!GO:0009059;macromolecule biosynthetic process;3.7300013345199e-26!GO:0006412;translation;4.85225086038202e-26!GO:0031966;mitochondrial membrane;1.06795480075298e-25!GO:0019866;organelle inner membrane;5.80712497273471e-25!GO:0003735;structural constituent of ribosome;9.15448420986553e-25!GO:0046907;intracellular transport;1.18653937305282e-24!GO:0005783;endoplasmic reticulum;1.4134634768638e-24!GO:0005634;nucleus;3.73919177609402e-24!GO:0005743;mitochondrial inner membrane;1.95704971909508e-23!GO:0016071;mRNA metabolic process;4.71837402749253e-23!GO:0033279;ribosomal subunit;4.71837402749253e-23!GO:0065003;macromolecular complex assembly;1.90395140925855e-22!GO:0006886;intracellular protein transport;7.13874026062958e-22!GO:0008380;RNA splicing;2.09085067870238e-21!GO:0044249;cellular biosynthetic process;3.30633568011029e-21!GO:0012505;endomembrane system;2.21005080950804e-20!GO:0031981;nuclear lumen;4.1026358012398e-20!GO:0022607;cellular component assembly;4.76643424252113e-20!GO:0006396;RNA processing;7.29756251618731e-20!GO:0006397;mRNA processing;4.04828427447364e-19!GO:0005794;Golgi apparatus;1.4583736240416e-18!GO:0008134;transcription factor binding;1.86754715221987e-18!GO:0006119;oxidative phosphorylation;3.39409898760427e-18!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.0820476755763e-17!GO:0051641;cellular localization;3.8000856578235e-17!GO:0051649;establishment of cellular localization;6.78436074644371e-17!GO:0048770;pigment granule;3.89738582833229e-16!GO:0042470;melanosome;3.89738582833229e-16!GO:0044432;endoplasmic reticulum part;7.43494769012644e-16!GO:0044265;cellular macromolecule catabolic process;1.78682641893616e-15!GO:0044455;mitochondrial membrane part;5.11937239242649e-15!GO:0005746;mitochondrial respiratory chain;6.24215438313029e-15!GO:0006996;organelle organization and biogenesis;8.10157912279262e-15!GO:0005681;spliceosome;1.74426162368487e-14!GO:0031980;mitochondrial lumen;2.12253786778374e-14!GO:0005759;mitochondrial matrix;2.12253786778374e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.47275087500494e-14!GO:0044445;cytosolic part;2.60331113109993e-14!GO:0016192;vesicle-mediated transport;4.04637068545653e-14!GO:0044248;cellular catabolic process;4.25053342151047e-14!GO:0012501;programmed cell death;8.89112899609597e-14!GO:0000166;nucleotide binding;9.68958143585336e-14!GO:0043283;biopolymer metabolic process;1.0648136066292e-13!GO:0006915;apoptosis;1.22440810048866e-13!GO:0050136;NADH dehydrogenase (quinone) activity;1.31600342262575e-13!GO:0003954;NADH dehydrogenase activity;1.31600342262575e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.31600342262575e-13!GO:0015935;small ribosomal subunit;2.39887629404201e-13!GO:0008219;cell death;3.83682901586398e-13!GO:0016265;death;3.83682901586398e-13!GO:0005654;nucleoplasm;5.586892897873e-13!GO:0048523;negative regulation of cellular process;1.25721268134473e-12!GO:0051603;proteolysis involved in cellular protein catabolic process;1.27351500607263e-12!GO:0009055;electron carrier activity;1.34356955754379e-12!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.55343843202174e-12!GO:0006511;ubiquitin-dependent protein catabolic process;2.33252109703494e-12!GO:0019941;modification-dependent protein catabolic process;2.39004846538115e-12!GO:0043632;modification-dependent macromolecule catabolic process;2.39004846538115e-12!GO:0022618;protein-RNA complex assembly;2.5559134914902e-12!GO:0044257;cellular protein catabolic process;2.83322136128442e-12!GO:0005789;endoplasmic reticulum membrane;4.25432712899666e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;6.38875975036737e-12!GO:0010467;gene expression;6.90377738768787e-12!GO:0048193;Golgi vesicle transport;9.20778296416709e-12!GO:0044451;nucleoplasm part;9.23927014732348e-12!GO:0009057;macromolecule catabolic process;1.31898497892488e-11!GO:0030964;NADH dehydrogenase complex (quinone);1.75229829368164e-11!GO:0045271;respiratory chain complex I;1.75229829368164e-11!GO:0005747;mitochondrial respiratory chain complex I;1.75229829368164e-11!GO:0042775;organelle ATP synthesis coupled electron transport;1.93201440523981e-11!GO:0042773;ATP synthesis coupled electron transport;1.93201440523981e-11!GO:0003712;transcription cofactor activity;3.94822470981913e-11!GO:0043285;biopolymer catabolic process;4.54013192491853e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.72141532709604e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.92349604291651e-11!GO:0048519;negative regulation of biological process;5.83706768390868e-11!GO:0015934;large ribosomal subunit;8.37246055098736e-11!GO:0000502;proteasome complex (sensu Eukaryota);8.4260308502942e-11!GO:0043228;non-membrane-bound organelle;1.22054444411751e-10!GO:0043232;intracellular non-membrane-bound organelle;1.22054444411751e-10!GO:0006457;protein folding;1.40446431731133e-10!GO:0006605;protein targeting;1.53771499883833e-10!GO:0016874;ligase activity;1.65095343005833e-10!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.17510143479492e-10!GO:0031982;vesicle;2.26857894118467e-10!GO:0043412;biopolymer modification;2.41891165027176e-10!GO:0051186;cofactor metabolic process;3.13369795880322e-10!GO:0006461;protein complex assembly;4.25882254720049e-10!GO:0031410;cytoplasmic vesicle;4.71294182748026e-10!GO:0016462;pyrophosphatase activity;5.13027495029777e-10!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.96866665236469e-10!GO:0006464;protein modification process;7.08023228200702e-10!GO:0006091;generation of precursor metabolites and energy;7.26614996668495e-10!GO:0016817;hydrolase activity, acting on acid anhydrides;7.94628359169972e-10!GO:0005768;endosome;1.14439672614656e-09!GO:0006366;transcription from RNA polymerase II promoter;1.16591855432005e-09!GO:0017076;purine nucleotide binding;1.40672766893074e-09!GO:0008135;translation factor activity, nucleic acid binding;1.61742789261852e-09!GO:0006512;ubiquitin cycle;2.37101749981012e-09!GO:0031988;membrane-bound vesicle;3.0165598539877e-09!GO:0009056;catabolic process;3.21089519465222e-09!GO:0030163;protein catabolic process;3.68383595639555e-09!GO:0006732;coenzyme metabolic process;3.9318200178565e-09!GO:0006793;phosphorus metabolic process;3.97870237150285e-09!GO:0006796;phosphate metabolic process;3.97870237150285e-09!GO:0032553;ribonucleotide binding;4.53619531044217e-09!GO:0032555;purine ribonucleotide binding;4.53619531044217e-09!GO:0017111;nucleoside-triphosphatase activity;5.19048294817159e-09!GO:0045333;cellular respiration;5.32412385937224e-09!GO:0016023;cytoplasmic membrane-bound vesicle;5.52100074376712e-09!GO:0009060;aerobic respiration;6.02291049767141e-09!GO:0030036;actin cytoskeleton organization and biogenesis;8.5879176284916e-09!GO:0006446;regulation of translational initiation;9.62598456024352e-09!GO:0016604;nuclear body;1.34460572527898e-08!GO:0016491;oxidoreductase activity;1.40141742493705e-08!GO:0008565;protein transporter activity;1.5690274517375e-08!GO:0005761;mitochondrial ribosome;1.68148956228122e-08!GO:0000313;organellar ribosome;1.68148956228122e-08!GO:0005793;ER-Golgi intermediate compartment;1.80310855939526e-08!GO:0015980;energy derivation by oxidation of organic compounds;1.99615495213832e-08!GO:0042981;regulation of apoptosis;3.0278206369115e-08!GO:0016310;phosphorylation;3.06092790786606e-08!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.41976838747961e-08!GO:0003743;translation initiation factor activity;3.41976838747961e-08!GO:0043687;post-translational protein modification;3.90783124195199e-08!GO:0051082;unfolded protein binding;4.28445333173571e-08!GO:0016564;transcription repressor activity;4.77073423589405e-08!GO:0043067;regulation of programmed cell death;5.08189348389207e-08!GO:0006413;translational initiation;5.74692537818576e-08!GO:0008092;cytoskeletal protein binding;7.11086640089457e-08!GO:0005773;vacuole;8.07016848597392e-08!GO:0006913;nucleocytoplasmic transport;9.71863210018778e-08!GO:0006099;tricarboxylic acid cycle;1.12254510898817e-07!GO:0046356;acetyl-CoA catabolic process;1.12254510898817e-07!GO:0005635;nuclear envelope;1.36737465155407e-07!GO:0031324;negative regulation of cellular metabolic process;1.40389362686315e-07!GO:0009892;negative regulation of metabolic process;1.50192780702256e-07!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.68330462421121e-07!GO:0016607;nuclear speck;1.72566602659587e-07!GO:0044255;cellular lipid metabolic process;1.72566602659587e-07!GO:0051169;nuclear transport;1.91141901991176e-07!GO:0000398;nuclear mRNA splicing, via spliceosome;2.13166270622213e-07!GO:0000375;RNA splicing, via transesterification reactions;2.13166270622213e-07!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.13166270622213e-07!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.19392663768526e-07!GO:0007264;small GTPase mediated signal transduction;2.19888175324597e-07!GO:0031252;leading edge;2.3264021874832e-07!GO:0030029;actin filament-based process;3.93362838083973e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.18067839713863e-07!GO:0006084;acetyl-CoA metabolic process;4.5006196117497e-07!GO:0048522;positive regulation of cellular process;4.54045272374892e-07!GO:0019899;enzyme binding;5.02317783995307e-07!GO:0006629;lipid metabolic process;5.02317783995307e-07!GO:0008639;small protein conjugating enzyme activity;5.54901678370896e-07!GO:0000323;lytic vacuole;6.96083682139064e-07!GO:0005764;lysosome;6.96083682139064e-07!GO:0004842;ubiquitin-protein ligase activity;8.62448505006446e-07!GO:0043069;negative regulation of programmed cell death;8.62448505006446e-07!GO:0005770;late endosome;1.02624159377693e-06!GO:0009109;coenzyme catabolic process;1.07702338760933e-06!GO:0043066;negative regulation of apoptosis;1.14844816802134e-06!GO:0044431;Golgi apparatus part;1.19565990084887e-06!GO:0019829;cation-transporting ATPase activity;1.22435288405249e-06!GO:0050794;regulation of cellular process;1.51557993081078e-06!GO:0005730;nucleolus;1.72458405226237e-06!GO:0030554;adenyl nucleotide binding;1.78008368824461e-06!GO:0019787;small conjugating protein ligase activity;1.78008368824461e-06!GO:0051187;cofactor catabolic process;1.79227899531324e-06!GO:0048518;positive regulation of biological process;1.94285488265549e-06!GO:0051246;regulation of protein metabolic process;2.34017440390575e-06!GO:0003779;actin binding;3.74339776189127e-06!GO:0015986;ATP synthesis coupled proton transport;3.94091059737566e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.94091059737566e-06!GO:0007243;protein kinase cascade;4.08209343442833e-06!GO:0017038;protein import;4.23817763222269e-06!GO:0044262;cellular carbohydrate metabolic process;4.34604074974647e-06!GO:0032559;adenyl ribonucleotide binding;4.58981406744606e-06!GO:0005524;ATP binding;4.99466110191906e-06!GO:0003713;transcription coactivator activity;5.12209132569604e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;5.17000248232755e-06!GO:0044440;endosomal part;5.64383257487108e-06!GO:0010008;endosome membrane;5.64383257487108e-06!GO:0003714;transcription corepressor activity;5.7196628136737e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;6.07989355873431e-06!GO:0016481;negative regulation of transcription;6.13904084244313e-06!GO:0016563;transcription activator activity;6.19459545961402e-06!GO:0050789;regulation of biological process;6.50379209317765e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.12350865744804e-06!GO:0006888;ER to Golgi vesicle-mediated transport;7.49385732816112e-06!GO:0015078;hydrogen ion transmembrane transporter activity;8.13572677352338e-06!GO:0045259;proton-transporting ATP synthase complex;8.56861756310754e-06!GO:0006259;DNA metabolic process;8.62748273424315e-06!GO:0048475;coated membrane;9.07080423872171e-06!GO:0030117;membrane coat;9.07080423872171e-06!GO:0048471;perinuclear region of cytoplasm;1.01956207891275e-05!GO:0030120;vesicle coat;1.13098347436197e-05!GO:0030662;coated vesicle membrane;1.13098347436197e-05!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.19767253578366e-05!GO:0031965;nuclear membrane;1.27030594318695e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;2.20454511708716e-05!GO:0005839;proteasome core complex (sensu Eukaryota);2.24722140779397e-05!GO:0006066;alcohol metabolic process;2.25497773417225e-05!GO:0042802;identical protein binding;2.64849931402126e-05!GO:0005525;GTP binding;2.71906256558004e-05!GO:0016881;acid-amino acid ligase activity;3.12299568880991e-05!GO:0005975;carbohydrate metabolic process;3.92634854834184e-05!GO:0051789;response to protein stimulus;4.19002460282877e-05!GO:0006986;response to unfolded protein;4.19002460282877e-05!GO:0007242;intracellular signaling cascade;4.73261914024296e-05!GO:0006916;anti-apoptosis;5.11418166744432e-05!GO:0006950;response to stress;5.17323322106334e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;5.20765561122927e-05!GO:0003924;GTPase activity;5.39976952373801e-05!GO:0000139;Golgi membrane;6.28606217480349e-05!GO:0007265;Ras protein signal transduction;6.28606217480349e-05!GO:0051170;nuclear import;7.24342040832326e-05!GO:0006082;organic acid metabolic process;7.66384619947596e-05!GO:0042623;ATPase activity, coupled;7.82515441454504e-05!GO:0019318;hexose metabolic process;8.04281790069607e-05!GO:0016887;ATPase activity;8.14117989479403e-05!GO:0050662;coenzyme binding;8.25679275843482e-05!GO:0005788;endoplasmic reticulum lumen;8.44103236695197e-05!GO:0016469;proton-transporting two-sector ATPase complex;9.42270228830164e-05!GO:0005996;monosaccharide metabolic process;0.000102685719415238!GO:0006606;protein import into nucleus;0.000106283895882412!GO:0016787;hydrolase activity;0.000106710919212913!GO:0043566;structure-specific DNA binding;0.000116478504948443!GO:0051287;NAD binding;0.000122707105218394!GO:0004298;threonine endopeptidase activity;0.000123158513699968!GO:0007010;cytoskeleton organization and biogenesis;0.000123993538823671!GO:0006754;ATP biosynthetic process;0.000125112572143433!GO:0006753;nucleoside phosphate metabolic process;0.000125112572143433!GO:0051188;cofactor biosynthetic process;0.000136861324656774!GO:0032561;guanyl ribonucleotide binding;0.000143826724302191!GO:0019001;guanyl nucleotide binding;0.000143826724302191!GO:0019752;carboxylic acid metabolic process;0.000147250951662087!GO:0016740;transferase activity;0.00015334222417454!GO:0005741;mitochondrial outer membrane;0.000158513987462551!GO:0030133;transport vesicle;0.000164242702776686!GO:0006613;cotranslational protein targeting to membrane;0.000168148911290799!GO:0045786;negative regulation of progression through cell cycle;0.000177791535010935!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000183146640819136!GO:0016044;membrane organization and biogenesis;0.000184579652120745!GO:0001666;response to hypoxia;0.000211000356045289!GO:0006325;establishment and/or maintenance of chromatin architecture;0.000214957350749282!GO:0008154;actin polymerization and/or depolymerization;0.000227079257080386!GO:0008610;lipid biosynthetic process;0.000243444941941865!GO:0005791;rough endoplasmic reticulum;0.000258082046242708!GO:0000245;spliceosome assembly;0.000273936260050749!GO:0005798;Golgi-associated vesicle;0.00028996663581923!GO:0045893;positive regulation of transcription, DNA-dependent;0.00031165522069633!GO:0031968;organelle outer membrane;0.00031853754555844!GO:0016197;endosome transport;0.000326801042795143!GO:0019867;outer membrane;0.000336641543986104!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000340256348182819!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;0.00035066719400253!GO:0009145;purine nucleoside triphosphate biosynthetic process;0.00035066719400253!GO:0009142;nucleoside triphosphate biosynthetic process;0.000372945998969023!GO:0009201;ribonucleoside triphosphate biosynthetic process;0.000372945998969023!GO:0051128;regulation of cellular component organization and biogenesis;0.000379630706133051!GO:0004177;aminopeptidase activity;0.000386249954130165!GO:0046034;ATP metabolic process;0.000396992020472019!GO:0009150;purine ribonucleotide metabolic process;0.000396992020472019!GO:0051427;hormone receptor binding;0.000427543572039675!GO:0007049;cell cycle;0.000441551724175914!GO:0044453;nuclear membrane part;0.000450133245469816!GO:0006118;electron transport;0.000450868007809214!GO:0009152;purine ribonucleotide biosynthetic process;0.000469806434119095!GO:0009966;regulation of signal transduction;0.000481926450257156!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000482026843763069!GO:0009108;coenzyme biosynthetic process;0.000483741309786488!GO:0032446;protein modification by small protein conjugation;0.000495807876967477!GO:0065007;biological regulation;0.000515175352675592!GO:0003702;RNA polymerase II transcription factor activity;0.000515506959894826!GO:0001726;ruffle;0.000579151588442078!GO:0030867;rough endoplasmic reticulum membrane;0.000595464374906075!GO:0006323;DNA packaging;0.000596099289858323!GO:0005083;small GTPase regulator activity;0.000596099289858323!GO:0008361;regulation of cell size;0.000635615097348065!GO:0019843;rRNA binding;0.000645988941631691!GO:0016567;protein ubiquitination;0.000656938309317794!GO:0000151;ubiquitin ligase complex;0.000667761928036228!GO:0009205;purine ribonucleoside triphosphate metabolic process;0.00067492912046978!GO:0009144;purine nucleoside triphosphate metabolic process;0.00067492912046978!GO:0009199;ribonucleoside triphosphate metabolic process;0.000700679926106976!GO:0006163;purine nucleotide metabolic process;0.000706555197686995!GO:0032787;monocarboxylic acid metabolic process;0.000706555197686995!GO:0009259;ribonucleotide metabolic process;0.000729762975432665!GO:0045892;negative regulation of transcription, DNA-dependent;0.000761562365339595!GO:0008654;phospholipid biosynthetic process;0.00076279190179726!GO:0030532;small nuclear ribonucleoprotein complex;0.000766032402883061!GO:0035257;nuclear hormone receptor binding;0.000768841650537464!GO:0016049;cell growth;0.000774531708022733!GO:0006164;purine nucleotide biosynthetic process;0.000888422221518227!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000940657349332456!GO:0045941;positive regulation of transcription;0.000964566910586663!GO:0009141;nucleoside triphosphate metabolic process;0.000984895515376115!GO:0006635;fatty acid beta-oxidation;0.00102447929706457!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00105060611262802!GO:0003724;RNA helicase activity;0.00109251996528745!GO:0008286;insulin receptor signaling pathway;0.00112956464692798!GO:0004386;helicase activity;0.00116614788999607!GO:0045454;cell redox homeostasis;0.001202731265548!GO:0009260;ribonucleotide biosynthetic process;0.00125032015921715!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00125229245395085!GO:0019904;protein domain specific binding;0.0012899568892175!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00132979348370239!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00132979348370239!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00132979348370239!GO:0005885;Arp2/3 protein complex;0.0013420021510238!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.0013615075180367!GO:0003697;single-stranded DNA binding;0.00137215018771012!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00138476919955451!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00153646158610039!GO:0008026;ATP-dependent helicase activity;0.00163286131445746!GO:0005762;mitochondrial large ribosomal subunit;0.00172213247567678!GO:0000315;organellar large ribosomal subunit;0.00172213247567678!GO:0006612;protein targeting to membrane;0.00179491452269077!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00197902138857208!GO:0015399;primary active transmembrane transporter activity;0.00197902138857208!GO:0006006;glucose metabolic process;0.00201666697294394!GO:0043623;cellular protein complex assembly;0.00204673355721673!GO:0006897;endocytosis;0.00208482238482097!GO:0010324;membrane invagination;0.00208482238482097!GO:0008629;induction of apoptosis by intracellular signals;0.00208522205822341!GO:0005769;early endosome;0.00216033121536867!GO:0007005;mitochondrion organization and biogenesis;0.00217525362297704!GO:0016568;chromatin modification;0.00220012287300567!GO:0035258;steroid hormone receptor binding;0.00222162496963322!GO:0016070;RNA metabolic process;0.00229365946609683!GO:0001558;regulation of cell growth;0.00236422502216004!GO:0030027;lamellipodium;0.00240839728738385!GO:0008047;enzyme activator activity;0.00244100925299675!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00244915187994981!GO:0050657;nucleic acid transport;0.00244915187994981!GO:0051236;establishment of RNA localization;0.00244915187994981!GO:0050658;RNA transport;0.00244915187994981!GO:0051920;peroxiredoxin activity;0.00247298750782605!GO:0005667;transcription factor complex;0.00248288901906069!GO:0022890;inorganic cation transmembrane transporter activity;0.00250240218037152!GO:0030695;GTPase regulator activity;0.00252770767197106!GO:0043065;positive regulation of apoptosis;0.00255730110521776!GO:0016853;isomerase activity;0.00267959375825928!GO:0051726;regulation of cell cycle;0.00310868680218681!GO:0006403;RNA localization;0.00310868680218681!GO:0006333;chromatin assembly or disassembly;0.00312027353307051!GO:0043021;ribonucleoprotein binding;0.00313592194794521!GO:0000074;regulation of progression through cell cycle;0.00314975290490725!GO:0003690;double-stranded DNA binding;0.00319741044571764!GO:0007266;Rho protein signal transduction;0.0032481907803497!GO:0003676;nucleic acid binding;0.00337177662398347!GO:0006631;fatty acid metabolic process;0.0034667872432249!GO:0065002;intracellular protein transport across a membrane;0.0034894928928689!GO:0008064;regulation of actin polymerization and/or depolymerization;0.00353053531027287!GO:0005643;nuclear pore;0.00359588453743677!GO:0048468;cell development;0.00371942484050024!GO:0031902;late endosome membrane;0.0037367421426062!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.00373825003853458!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.00374353953060711!GO:0004812;aminoacyl-tRNA ligase activity;0.00374353953060711!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.00374353953060711!GO:0033673;negative regulation of kinase activity;0.0037755262335469!GO:0006469;negative regulation of protein kinase activity;0.0037755262335469!GO:0043068;positive regulation of programmed cell death;0.00384208212507088!GO:0009719;response to endogenous stimulus;0.00389975936550456!GO:0006979;response to oxidative stress;0.00400860455317099!GO:0046983;protein dimerization activity;0.00417287879839549!GO:0051276;chromosome organization and biogenesis;0.00443527218898243!GO:0006643;membrane lipid metabolic process;0.00448348027914645!GO:0030041;actin filament polymerization;0.00455862482253785!GO:0030118;clathrin coat;0.00485731013231006!GO:0043492;ATPase activity, coupled to movement of substances;0.00489943359297769!GO:0017040;ceramidase activity;0.00515841937777115!GO:0043038;amino acid activation;0.00552763088513587!GO:0006418;tRNA aminoacylation for protein translation;0.00552763088513587!GO:0043039;tRNA aminoacylation;0.00552763088513587!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00557064171968644!GO:0008234;cysteine-type peptidase activity;0.00565883226464493!GO:0008250;oligosaccharyl transferase complex;0.00572177852746973!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.00574157510107759!GO:0033043;regulation of organelle organization and biogenesis;0.00574157510107759!GO:0030518;steroid hormone receptor signaling pathway;0.00576730623457206!GO:0016301;kinase activity;0.00579129343217855!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00581115807557823!GO:0046930;pore complex;0.00590996096170763!GO:0005905;coated pit;0.00637662085128715!GO:0006693;prostaglandin metabolic process;0.00658566407357725!GO:0006692;prostanoid metabolic process;0.00658566407357725!GO:0006892;post-Golgi vesicle-mediated transport;0.00668441443823498!GO:0030127;COPII vesicle coat;0.00690255985146357!GO:0012507;ER to Golgi transport vesicle membrane;0.00690255985146357!GO:0033116;ER-Golgi intermediate compartment membrane;0.00705740390649598!GO:0006695;cholesterol biosynthetic process;0.00712213960549912!GO:0030134;ER to Golgi transport vesicle;0.00722269227666645!GO:0006752;group transfer coenzyme metabolic process;0.00726476922417546!GO:0048037;cofactor binding;0.00726476922417546!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00739102973388329!GO:0005912;adherens junction;0.00740983083245977!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.00753494786458624!GO:0008283;cell proliferation;0.0075469795695533!GO:0017166;vinculin binding;0.00755745117113958!GO:0006402;mRNA catabolic process;0.00781763351525525!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0079088697079163!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00792762636279455!GO:0000785;chromatin;0.00824950249744347!GO:0006487;protein amino acid N-linked glycosylation;0.0084185160201871!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00873194373301822!GO:0009967;positive regulation of signal transduction;0.00881469163318588!GO:0006917;induction of apoptosis;0.00889270390004485!GO:0051348;negative regulation of transferase activity;0.00899733712237831!GO:0030658;transport vesicle membrane;0.00914613900493646!GO:0008186;RNA-dependent ATPase activity;0.00915185874572721!GO:0046467;membrane lipid biosynthetic process;0.00926409388895381!GO:0016363;nuclear matrix;0.00937631603566483!GO:0065004;protein-DNA complex assembly;0.00937631603566483!GO:0006644;phospholipid metabolic process;0.00955987174309416!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00965644551075146!GO:0000314;organellar small ribosomal subunit;0.00983933200697381!GO:0005763;mitochondrial small ribosomal subunit;0.00983933200697381!GO:0003729;mRNA binding;0.00983933200697381!GO:0004197;cysteine-type endopeptidase activity;0.00983933200697381!GO:0005048;signal sequence binding;0.00991757371175687!GO:0007167;enzyme linked receptor protein signaling pathway;0.0102863091823842!GO:0004576;oligosaccharyl transferase activity;0.0104732708177019!GO:0006749;glutathione metabolic process;0.0105642344118237!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.010723248806762!GO:0042254;ribosome biogenesis and assembly;0.0108543864232002!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.010980915908791!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.010980915908791!GO:0032940;secretion by cell;0.011376771151394!GO:0030832;regulation of actin filament length;0.0115500936400447!GO:0045045;secretory pathway;0.0117105554685372!GO:0012502;induction of programmed cell death;0.0118190980675504!GO:0004364;glutathione transferase activity;0.0118553982367844!GO:0006891;intra-Golgi vesicle-mediated transport;0.0123082900157202!GO:0051540;metal cluster binding;0.0124012657583834!GO:0051536;iron-sulfur cluster binding;0.0124012657583834!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0124012657583834!GO:0065009;regulation of a molecular function;0.0124012657583834!GO:0032535;regulation of cellular component size;0.0124128283670113!GO:0016126;sterol biosynthetic process;0.0124732607302737!GO:0030100;regulation of endocytosis;0.012532888587751!GO:0051539;4 iron, 4 sulfur cluster binding;0.0130563417866849!GO:0046364;monosaccharide biosynthetic process;0.0131276140540499!GO:0046165;alcohol biosynthetic process;0.0131276140540499!GO:0006974;response to DNA damage stimulus;0.0133178263666844!GO:0012506;vesicle membrane;0.0139606474317227!GO:0030139;endocytic vesicle;0.0139917479781283!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0141114542989228!GO:0015002;heme-copper terminal oxidase activity;0.0141114542989228!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0141114542989228!GO:0004129;cytochrome-c oxidase activity;0.0141114542989228!GO:0042627;chylomicron;0.014322597519016!GO:0016584;nucleosome positioning;0.0146816507461534!GO:0051028;mRNA transport;0.0146816507461534!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0148749279706698!GO:0051087;chaperone binding;0.0149608704500292!GO:0019395;fatty acid oxidation;0.0153489953969472!GO:0043034;costamere;0.0154033827915085!GO:0005777;peroxisome;0.015820942676747!GO:0042579;microbody;0.015820942676747!GO:0043488;regulation of mRNA stability;0.0158461721911232!GO:0043487;regulation of RNA stability;0.0158461721911232!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0160040828238222!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.016270603914797!GO:0030521;androgen receptor signaling pathway;0.016351342048432!GO:0006607;NLS-bearing substrate import into nucleus;0.0171234597393835!GO:0030659;cytoplasmic vesicle membrane;0.0173112617591238!GO:0030865;cortical cytoskeleton organization and biogenesis;0.017365398155978!GO:0009117;nucleotide metabolic process;0.017365398155978!GO:0030145;manganese ion binding;0.0177515381408586!GO:0009100;glycoprotein metabolic process;0.0179577817839331!GO:0004860;protein kinase inhibitor activity;0.0180394194545698!GO:0030119;AP-type membrane coat adaptor complex;0.0183367113753977!GO:0015629;actin cytoskeleton;0.0186398916515504!GO:0005774;vacuolar membrane;0.0192722515165675!GO:0015036;disulfide oxidoreductase activity;0.0194258821959183!GO:0016859;cis-trans isomerase activity;0.0194602416433889!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.0201078248746923!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0202562383130229!GO:0006401;RNA catabolic process;0.0203230015130028!GO:0004300;enoyl-CoA hydratase activity;0.020340173011114!GO:0019319;hexose biosynthetic process;0.0213787488523073!GO:0009991;response to extracellular stimulus;0.0215907085428075!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0216234834637954!GO:0004004;ATP-dependent RNA helicase activity;0.0216306024047313!GO:0015926;glucosidase activity;0.0217052301964944!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0217930149100952!GO:0051168;nuclear export;0.0218087571363808!GO:0060090;molecular adaptor activity;0.02194038235604!GO:0030131;clathrin adaptor complex;0.0223195150894655!GO:0030132;clathrin coat of coated pit;0.0225008767314189!GO:0009893;positive regulation of metabolic process;0.0225454872847432!GO:0017042;glycosylceramidase activity;0.0227680610529775!GO:0010045;response to nickel ion;0.0227680610529775!GO:0000016;lactase activity;0.0227680610529775!GO:0010288;response to lead ion;0.0227680610529775!GO:0009744;response to sucrose stimulus;0.0227680610529775!GO:0030663;COPI coated vesicle membrane;0.0228503418958201!GO:0030126;COPI vesicle coat;0.0228503418958201!GO:0051252;regulation of RNA metabolic process;0.0228572782868882!GO:0048500;signal recognition particle;0.022940063679162!GO:0035035;histone acetyltransferase binding;0.0230936521671881!GO:0006518;peptide metabolic process;0.0235438030745835!GO:0030241;muscle thick filament assembly;0.0238462120798384!GO:0031034;myosin filament assembly;0.0238462120798384!GO:0031033;myosin filament assembly or disassembly;0.0238462120798384!GO:0048739;cardiac muscle fiber development;0.0238462120798384!GO:0051017;actin filament bundle formation;0.0241579451160858!GO:0044433;cytoplasmic vesicle part;0.0241950925357632!GO:0008139;nuclear localization sequence binding;0.0241950925357632!GO:0001516;prostaglandin biosynthetic process;0.0246962198920548!GO:0046457;prostanoid biosynthetic process;0.0246962198920548!GO:0018196;peptidyl-asparagine modification;0.0247525372736233!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0247525372736233!GO:0045098;type III intermediate filament;0.0249984017275549!GO:0030660;Golgi-associated vesicle membrane;0.0250678386146519!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.025233453537927!GO:0006650;glycerophospholipid metabolic process;0.0256743241215426!GO:0016791;phosphoric monoester hydrolase activity;0.0257634550846296!GO:0033344;cholesterol efflux;0.0259852496760499!GO:0007169;transmembrane receptor protein tyrosine kinase signaling pathway;0.026066311562839!GO:0006869;lipid transport;0.0260939177297161!GO:0051235;maintenance of localization;0.026769610163558!GO:0005765;lysosomal membrane;0.0268625829020162!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0282889859274181!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0283265008911528!GO:0030176;integral to endoplasmic reticulum membrane;0.0285179423583708!GO:0044275;cellular carbohydrate catabolic process;0.0285954881721666!GO:0050591;quinine 3-monooxygenase activity;0.0286165773096988!GO:0033780;taurochenodeoxycholate 6alpha-hydroxylase activity;0.0286165773096988!GO:0005096;GTPase activator activity;0.0286165773096988!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0287579524800295!GO:0006414;translational elongation;0.0288375923583643!GO:0030522;intracellular receptor-mediated signaling pathway;0.0292069952433025!GO:0051101;regulation of DNA binding;0.0296896836212268!GO:0005813;centrosome;0.0298929347787532!GO:0005862;muscle thin filament tropomyosin;0.0300834813932656!GO:0043681;protein import into mitochondrion;0.030479460492068!GO:0051270;regulation of cell motility;0.031062001769347!GO:0031529;ruffle organization and biogenesis;0.0316637213918999!GO:0009101;glycoprotein biosynthetic process;0.031809952006943!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.032305325390375!GO:0048487;beta-tubulin binding;0.0330873450877895!GO:0005869;dynactin complex;0.0331743513208473!GO:0005938;cell cortex;0.0333754367003759!GO:0030833;regulation of actin filament polymerization;0.0335754435530701!GO:0050811;GABA receptor binding;0.0339890166313176!GO:0004558;alpha-glucosidase activity;0.0352440396212705!GO:0022415;viral reproductive process;0.0363505780884024!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0363505780884024!GO:0016408;C-acyltransferase activity;0.0376534465032709!GO:0004463;leukotriene-A4 hydrolase activity;0.0377822775914498!GO:0004301;epoxide hydrolase activity;0.0377822775914498!GO:0015918;sterol transport;0.0383276642828196!GO:0030301;cholesterol transport;0.0383276642828196!GO:0004674;protein serine/threonine kinase activity;0.0383276642828196!GO:0016405;CoA-ligase activity;0.0383276642828196!GO:0007584;response to nutrient;0.0383503094445621!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0395824419365253!GO:0045047;protein targeting to ER;0.0395824419365253!GO:0001887;selenium metabolic process;0.0398564539474032!GO:0046578;regulation of Ras protein signal transduction;0.0400361950314487!GO:0006984;ER-nuclear signaling pathway;0.0402428119888014!GO:0006376;mRNA splice site selection;0.0402428119888014!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0402428119888014!GO:0004448;isocitrate dehydrogenase activity;0.0407279062729494!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0407279062729494!GO:0045944;positive regulation of transcription from RNA polymerase II promoter;0.0418601648508218!GO:0005070;SH3/SH2 adaptor activity;0.0422497674675543!GO:0045947;negative regulation of translational initiation;0.0422663839520131!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0422664588678942!GO:0043284;biopolymer biosynthetic process;0.0424797394186097!GO:0031667;response to nutrient levels;0.0424797394186097!GO:0031901;early endosome membrane;0.0424797394186097!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0429129304513631!GO:0031272;regulation of pseudopodium formation;0.0438282383308784!GO:0031269;pseudopodium formation;0.0438282383308784!GO:0031344;regulation of cell projection organization and biogenesis;0.0438282383308784!GO:0031268;pseudopodium organization and biogenesis;0.0438282383308784!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0438282383308784!GO:0031274;positive regulation of pseudopodium formation;0.0438282383308784!GO:0005099;Ras GTPase activator activity;0.0441204833053441!GO:0043022;ribosome binding;0.0441204833053441!GO:0017091;AU-rich element binding;0.0448454591660635!GO:0050779;RNA destabilization;0.0448454591660635!GO:0000289;poly(A) tail shortening;0.0448454591660635!GO:0050681;androgen receptor binding;0.0469793843575941!GO:0030031;cell projection biogenesis;0.0474890047827317!GO:0008022;protein C-terminus binding;0.047592608048567!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0477296984205081!GO:0010257;NADH dehydrogenase complex assembly;0.0477296984205081!GO:0033108;mitochondrial respiratory chain complex assembly;0.0477296984205081!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0483391365052433!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0485167719801153!GO:0019208;phosphatase regulator activity;0.0485186116409202!GO:0008097;5S rRNA binding;0.0491987082403269!GO:0030137;COPI-coated vesicle;0.0493761257004197!GO:0051049;regulation of transport;0.0494303886075085!GO:0022402;cell cycle process;0.049490230332416!GO:0006509;membrane protein ectodomain proteolysis;0.049490230332416!GO:0033619;membrane protein proteolysis;0.049490230332416 | |||
|sample_id=10014 | |sample_id=10014 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=colon | |sample_tissue=colon | ||
|top_motifs=HNF4A_NR2F1,2:6.17982717821;HNF1A:4.1852458009;RXR{A,B,G}_{NR1H2,PPAR}dimers:2.97743531193;GATA6:2.51497333229;NR1H4:2.2229534358;SP1:2.18869153487;AR:2.01657536191;SNAI1..3:2.01585090536;T:1.95110676896;ZEB1:1.88711902113;MTF1:1.8763845941;ESRRA:1.80579235391;TBP:1.78992475971;SRF:1.72541256102;FOX{D1,D2}:1.71032168487;FOX{F1,F2,J1}:1.66207819773;TFCP2:1.64285819161;MAZ:1.62463376666;RBPJ:1.59934929512;TFAP2{A,C}:1.52513301289;XCPE1{core}:1.52460054935;SPZ1:1.51533851241;FOXA2:1.44203958121;FOXL1:1.43058622419;ZNF148:1.323126132;NANOG:1.29955082283;MYBL2:1.25673112396;FOXO1,3,4:1.25354444089;TLX1..3_NFIC{dimer}:1.23450016649;MYFfamily:1.22187521752;ATF6:1.21176817819;PAX6:1.20889638508;PATZ1:1.20169125418;POU5F1:1.15756647484;EP300:1.15553788715;NR3C1:1.13263777733;MYOD1:1.12941365457;FOX{I1,J2}:1.10348555054;MTE{core}:1.05577815381;GTF2I:1.04681401936;ADNP_IRX_SIX_ZHX:1.04596752184;HIC1:1.02913352185;NFATC1..3:1.02037708555;TFAP2B:0.98619063851;POU2F1..3:0.983697366037;TLX2:0.973587869356;MED-1{core}:0.911856078791;GTF2A1,2:0.893728844104;GFI1B:0.85712912328;LMO2:0.845596026563;HMX1:0.835000808895;MZF1:0.82998727814;EBF1:0.806997071652;POU6F1:0.772968400548;HOX{A6,A7,B6,B7}:0.758587915262;PAX5:0.758578587199;DBP:0.725684069938;PRDM1:0.706687533283;TFAP4:0.695258416688;TBX4,5:0.675560060641;NHLH1,2:0.666043644703;IRF7:0.659070634534;ESR1:0.640219763641;NR5A1,2:0.638638725258;NR6A1:0.633527770308;EGR1..3:0.617523147014;RREB1:0.604526469223;bHLH_family:0.593236322817;FOXM1:0.588268563793;IRF1,2:0.578185968713;STAT1,3:0.556149601838;ZNF423:0.554779392964;ALX1:0.488450331837;REST:0.464529827606;FOXD3:0.463221346188;SOX5:0.46245053305;STAT2,4,6:0.439999037102;RXR{A,B,G}:0.431843277602;NKX2-3_NKX2-5:0.430394719223;ETS1,2:0.424845265589;DMAP1_NCOR{1,2}_SMARC:0.393560325944;SREBF1,2:0.393165776306;MEF2{A,B,C,D}:0.323036991108;IKZF1:0.316721197363;TGIF1:0.314847280025;SMAD1..7,9:0.284128735711;NFIX:0.267849210024;BREu{core}:0.233199754094;ZFP161:0.227829977061;FOXP1:0.22319872264;RFX2..5_RFXANK_RFXAP:0.216411599786;PITX1..3:0.193031946048;TEAD1:0.189057226574;SPIB:0.165860713043;FOXN1:0.125214190578;ATF2:0.0681447351113;HBP1_HMGB_SSRP1_UBTF:0.0563305906391;IKZF2:0.0228599917821;CRX:0.0183774765253;LEF1_TCF7_TCF7L1,2:0.0116771427551;ZNF143:0.00247455012437;GCM1,2:-0.00378446885997;VSX1,2:-0.00927820635734;MAFB:-0.0127204802296;HMGA1,2:-0.0596024213389;PRRX1,2:-0.0753007321022;SPI1:-0.0851728669809;NKX2-2,8:-0.0960831264369;XBP1:-0.100561831079;GZF1:-0.101902557521;NFY{A,B,C}:-0.103288109981;NFIL3:-0.123895548757;RUNX1..3:-0.126740879356;ZBTB6:-0.139519131812;ONECUT1,2:-0.142376795524;SOX2:-0.150768613442;ZNF238:-0.163910957014;ATF4:-0.174782710186;JUN:-0.184505188221;ELF1,2,4:-0.232307319378;PBX1:-0.234291988202;HAND1,2:-0.246249849389;GFI1:-0.255388980714;GATA4:-0.262434773107;CDC5L:-0.264477888196;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.265106944735;NKX3-2:-0.297750512696;TFDP1:-0.30079372902;GLI1..3:-0.321634811244;TP53:-0.35166107891;NFE2:-0.354158984624;KLF4:-0.36801271652;NKX2-1,4:-0.368218161364;NKX6-1,2:-0.375933852955;FOXQ1:-0.389615856036;HLF:-0.39530705483;TOPORS:-0.402047579834;PDX1:-0.405064371158;FOSL2:-0.428599835846;NFKB1_REL_RELA:-0.435210619116;SOX{8,9,10}:-0.435871739807;ATF5_CREB3:-0.448928211315;RORA:-0.458583312113;LHX3,4:-0.462511679157;HES1:-0.481153904365;PAX1,9:-0.495838174779;SOX17:-0.501841273956;PAX3,7:-0.503980350509;RXRA_VDR{dimer}:-0.565682458283;BPTF:-0.577564976073;AHR_ARNT_ARNT2:-0.585463285768;E2F1..5:-0.592350310861;FOS_FOS{B,L1}_JUN{B,D}:-0.594128307752;CUX2:-0.596659748657;CEBPA,B_DDIT3:-0.597504856766;NRF1:-0.605639877723;PAX2:-0.638794681525;CDX1,2,4:-0.658249985622;BACH2:-0.659069658586;TEF:-0.758658688536;ZIC1..3:-0.762408056847;POU1F1:-0.796077459574;UFEwm:-0.823513542364;ZNF384:-0.838670906621;OCT4_SOX2{dimer}:-0.854347910888;ARID5B:-0.901161597379;CREB1:-0.909129114257;RFX1:-0.944208063095;ALX4:-0.946306981477;EVI1:-0.960999450163;NFE2L2:-0.965390661737;FOXP3:-0.966721421673;ELK1,4_GABP{A,B1}:-0.969436746812;HOX{A5,B5}:-0.994909203445;PPARG:-1.02800001516;HIF1A:-1.03588163929;AIRE:-1.04156359446;YY1:-1.10380680944;POU3F1..4:-1.13571738598;HSF1,2:-1.16693004659;EN1,2:-1.17126061638;TAL1_TCF{3,4,12}:-1.23295178997;NANOG{mouse}:-1.24130219517;NFE2L1:-1.36802832902;MYB:-1.37234256327;ZBTB16:-1.64308490792;HOX{A4,D4}:-1.72809584046;HOXA9_MEIS1:-1.83803648027;STAT5{A,B}:-1.93591357471;NKX3-1:-1.98602828311;PAX8:-2.09758347476;PAX4:-2.31118595141 | |top_motifs=HNF4A_NR2F1,2:6.17982717821;HNF1A:4.1852458009;RXR{A,B,G}_{NR1H2,PPAR}dimers:2.97743531193;GATA6:2.51497333229;NR1H4:2.2229534358;SP1:2.18869153487;AR:2.01657536191;SNAI1..3:2.01585090536;T:1.95110676896;ZEB1:1.88711902113;MTF1:1.8763845941;ESRRA:1.80579235391;TBP:1.78992475971;SRF:1.72541256102;FOX{D1,D2}:1.71032168487;FOX{F1,F2,J1}:1.66207819773;TFCP2:1.64285819161;MAZ:1.62463376666;RBPJ:1.59934929512;TFAP2{A,C}:1.52513301289;XCPE1{core}:1.52460054935;SPZ1:1.51533851241;FOXA2:1.44203958121;FOXL1:1.43058622419;ZNF148:1.323126132;NANOG:1.29955082283;MYBL2:1.25673112396;FOXO1,3,4:1.25354444089;TLX1..3_NFIC{dimer}:1.23450016649;MYFfamily:1.22187521752;ATF6:1.21176817819;PAX6:1.20889638508;PATZ1:1.20169125418;POU5F1:1.15756647484;EP300:1.15553788715;NR3C1:1.13263777733;MYOD1:1.12941365457;FOX{I1,J2}:1.10348555054;MTE{core}:1.05577815381;GTF2I:1.04681401936;ADNP_IRX_SIX_ZHX:1.04596752184;HIC1:1.02913352185;NFATC1..3:1.02037708555;TFAP2B:0.98619063851;POU2F1..3:0.983697366037;TLX2:0.973587869356;MED-1{core}:0.911856078791;GTF2A1,2:0.893728844104;GFI1B:0.85712912328;LMO2:0.845596026563;HMX1:0.835000808895;MZF1:0.82998727814;EBF1:0.806997071652;POU6F1:0.772968400548;HOX{A6,A7,B6,B7}:0.758587915262;PAX5:0.758578587199;DBP:0.725684069938;PRDM1:0.706687533283;TFAP4:0.695258416688;TBX4,5:0.675560060641;NHLH1,2:0.666043644703;IRF7:0.659070634534;ESR1:0.640219763641;NR5A1,2:0.638638725258;NR6A1:0.633527770308;EGR1..3:0.617523147014;RREB1:0.604526469223;bHLH_family:0.593236322817;FOXM1:0.588268563793;IRF1,2:0.578185968713;STAT1,3:0.556149601838;ZNF423:0.554779392964;ALX1:0.488450331837;REST:0.464529827606;FOXD3:0.463221346188;SOX5:0.46245053305;STAT2,4,6:0.439999037102;RXR{A,B,G}:0.431843277602;NKX2-3_NKX2-5:0.430394719223;ETS1,2:0.424845265589;DMAP1_NCOR{1,2}_SMARC:0.393560325944;SREBF1,2:0.393165776306;MEF2{A,B,C,D}:0.323036991108;IKZF1:0.316721197363;TGIF1:0.314847280025;SMAD1..7,9:0.284128735711;NFIX:0.267849210024;BREu{core}:0.233199754094;ZFP161:0.227829977061;FOXP1:0.22319872264;RFX2..5_RFXANK_RFXAP:0.216411599786;PITX1..3:0.193031946048;TEAD1:0.189057226574;SPIB:0.165860713043;FOXN1:0.125214190578;ATF2:0.0681447351113;HBP1_HMGB_SSRP1_UBTF:0.0563305906391;IKZF2:0.0228599917821;CRX:0.0183774765253;LEF1_TCF7_TCF7L1,2:0.0116771427551;ZNF143:0.00247455012437;GCM1,2:-0.00378446885997;VSX1,2:-0.00927820635734;MAFB:-0.0127204802296;HMGA1,2:-0.0596024213389;PRRX1,2:-0.0753007321022;SPI1:-0.0851728669809;NKX2-2,8:-0.0960831264369;XBP1:-0.100561831079;GZF1:-0.101902557521;NFY{A,B,C}:-0.103288109981;NFIL3:-0.123895548757;RUNX1..3:-0.126740879356;ZBTB6:-0.139519131812;ONECUT1,2:-0.142376795524;SOX2:-0.150768613442;ZNF238:-0.163910957014;ATF4:-0.174782710186;JUN:-0.184505188221;ELF1,2,4:-0.232307319378;PBX1:-0.234291988202;HAND1,2:-0.246249849389;GFI1:-0.255388980714;GATA4:-0.262434773107;CDC5L:-0.264477888196;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.265106944735;NKX3-2:-0.297750512696;TFDP1:-0.30079372902;GLI1..3:-0.321634811244;TP53:-0.35166107891;NFE2:-0.354158984624;KLF4:-0.36801271652;NKX2-1,4:-0.368218161364;NKX6-1,2:-0.375933852955;FOXQ1:-0.389615856036;HLF:-0.39530705483;TOPORS:-0.402047579834;PDX1:-0.405064371158;FOSL2:-0.428599835846;NFKB1_REL_RELA:-0.435210619116;SOX{8,9,10}:-0.435871739807;ATF5_CREB3:-0.448928211315;RORA:-0.458583312113;LHX3,4:-0.462511679157;HES1:-0.481153904365;PAX1,9:-0.495838174779;SOX17:-0.501841273956;PAX3,7:-0.503980350509;RXRA_VDR{dimer}:-0.565682458283;BPTF:-0.577564976073;AHR_ARNT_ARNT2:-0.585463285768;E2F1..5:-0.592350310861;FOS_FOS{B,L1}_JUN{B,D}:-0.594128307752;CUX2:-0.596659748657;CEBPA,B_DDIT3:-0.597504856766;NRF1:-0.605639877723;PAX2:-0.638794681525;CDX1,2,4:-0.658249985622;BACH2:-0.659069658586;TEF:-0.758658688536;ZIC1..3:-0.762408056847;POU1F1:-0.796077459574;UFEwm:-0.823513542364;ZNF384:-0.838670906621;OCT4_SOX2{dimer}:-0.854347910888;ARID5B:-0.901161597379;CREB1:-0.909129114257;RFX1:-0.944208063095;ALX4:-0.946306981477;EVI1:-0.960999450163;NFE2L2:-0.965390661737;FOXP3:-0.966721421673;ELK1,4_GABP{A,B1}:-0.969436746812;HOX{A5,B5}:-0.994909203445;PPARG:-1.02800001516;HIF1A:-1.03588163929;AIRE:-1.04156359446;YY1:-1.10380680944;POU3F1..4:-1.13571738598;HSF1,2:-1.16693004659;EN1,2:-1.17126061638;TAL1_TCF{3,4,12}:-1.23295178997;NANOG{mouse}:-1.24130219517;NFE2L1:-1.36802832902;MYB:-1.37234256327;ZBTB16:-1.64308490792;HOX{A4,D4}:-1.72809584046;HOXA9_MEIS1:-1.83803648027;STAT5{A,B}:-1.93591357471;NKX3-1:-1.98602828311;PAX8:-2.09758347476;PAX4:-2.31118595141 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10014-101C5;search_select_hide=table117:FF:10014-101C5 | |||
}} | }} | ||
Latest revision as of 12:14, 3 June 2020
| Name: | colon, adult, pool1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10619 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10619
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10619
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.122 |
| 10 | 10 | 0.0431 |
| 100 | 100 | 0.226 |
| 101 | 101 | 0.696 |
| 102 | 102 | 0.162 |
| 103 | 103 | 0.266 |
| 104 | 104 | 0.938 |
| 105 | 105 | 0.369 |
| 106 | 106 | 0.642 |
| 107 | 107 | 0.219 |
| 108 | 108 | 0.746 |
| 109 | 109 | 0.461 |
| 11 | 11 | 0.301 |
| 110 | 110 | 0.124 |
| 111 | 111 | 0.0758 |
| 112 | 112 | 0.532 |
| 113 | 113 | 0.864 |
| 114 | 114 | 0.0645 |
| 115 | 115 | 0.983 |
| 116 | 116 | 0.582 |
| 117 | 117 | 0.0292 |
| 118 | 118 | 0.296 |
| 119 | 119 | 0.705 |
| 12 | 12 | 0.843 |
| 120 | 120 | 0.092 |
| 121 | 121 | 0.767 |
| 122 | 122 | 0.824 |
| 123 | 123 | 0.167 |
| 124 | 124 | 0.635 |
| 125 | 125 | 0.0309 |
| 126 | 126 | 0.14 |
| 127 | 127 | 0.316 |
| 128 | 128 | 0.195 |
| 129 | 129 | 0.215 |
| 13 | 13 | 0.256 |
| 130 | 130 | 0.605 |
| 131 | 131 | 0.408 |
| 132 | 132 | 0.0867 |
| 133 | 133 | 0.00536 |
| 134 | 134 | 0.0172 |
| 135 | 135 | 0.174 |
| 136 | 136 | 0.866 |
| 137 | 137 | 0.341 |
| 138 | 138 | 0.503 |
| 139 | 139 | 0.0724 |
| 14 | 14 | 0.738 |
| 140 | 140 | 0.261 |
| 141 | 141 | 0.318 |
| 142 | 142 | 0.764 |
| 143 | 143 | 0.0247 |
| 144 | 144 | 0.701 |
| 145 | 145 | 0.415 |
| 146 | 146 | 0.262 |
| 147 | 147 | 0.65 |
| 148 | 148 | 0.969 |
| 149 | 149 | 0.134 |
| 15 | 15 | 0.0557 |
| 150 | 150 | 0.61 |
| 151 | 151 | 0.867 |
| 152 | 152 | 0.0843 |
| 153 | 153 | 0.993 |
| 154 | 154 | 0.538 |
| 155 | 155 | 0.822 |
| 156 | 156 | 0.904 |
| 157 | 157 | 0.413 |
| 158 | 158 | 0.248 |
| 159 | 159 | 0.716 |
| 16 | 16 | 0.342 |
| 160 | 160 | 0.655 |
| 161 | 161 | 0.458 |
| 162 | 162 | 0.481 |
| 163 | 163 | 0.811 |
| 164 | 164 | 0.0502 |
| 165 | 165 | 0.652 |
| 166 | 166 | 0.239 |
| 167 | 167 | 0.0894 |
| 168 | 168 | 0.0323 |
| 169 | 169 | 0.669 |
| 17 | 17 | 0.808 |
| 18 | 18 | 0.00772 |
| 19 | 19 | 0.43 |
| 2 | 2 | 0.0349 |
| 20 | 20 | 0.0656 |
| 21 | 21 | 0.194 |
| 22 | 22 | 0.563 |
| 23 | 23 | 0.551 |
| 24 | 24 | 0.643 |
| 25 | 25 | 0.61 |
| 26 | 26 | 0.342 |
| 27 | 27 | 0.568 |
| 28 | 28 | 0.84 |
| 29 | 29 | 0.0155 |
| 3 | 3 | 0.329 |
| 30 | 30 | 0.0117 |
| 31 | 31 | 0.839 |
| 32 | 32 | 0.366 |
| 33 | 33 | 0.378 |
| 34 | 34 | 0.272 |
| 35 | 35 | 0.199 |
| 36 | 36 | 0.0229 |
| 37 | 37 | 0.375 |
| 38 | 38 | 0.735 |
| 39 | 39 | 0.172 |
| 4 | 4 | 0.305 |
| 40 | 40 | 0.409 |
| 41 | 41 | 0.0836 |
| 42 | 42 | 0.447 |
| 43 | 43 | 0.482 |
| 44 | 44 | 0.761 |
| 45 | 45 | 0.162 |
| 46 | 46 | 0.215 |
| 47 | 47 | 0.27 |
| 48 | 48 | 0.446 |
| 49 | 49 | 0.0792 |
| 5 | 5 | 0.809 |
| 50 | 50 | 0.221 |
| 51 | 51 | 0.983 |
| 52 | 52 | 0.0599 |
| 53 | 53 | 0.649 |
| 54 | 54 | 0.77 |
| 55 | 55 | 0.479 |
| 56 | 56 | 0.857 |
| 57 | 57 | 0.073 |
| 58 | 58 | 0.945 |
| 59 | 59 | 0.47 |
| 6 | 6 | 0.863 |
| 60 | 60 | 0.372 |
| 61 | 61 | 0.576 |
| 62 | 62 | 0.612 |
| 63 | 63 | 0.957 |
| 64 | 64 | 0.527 |
| 65 | 65 | 0.707 |
| 66 | 66 | 0.0625 |
| 67 | 67 | 0.109 |
| 68 | 68 | 0.878 |
| 69 | 69 | 0.684 |
| 7 | 7 | 0.879 |
| 70 | 70 | 0.0639 |
| 71 | 71 | 0.0748 |
| 72 | 72 | 0.968 |
| 73 | 73 | 0.79 |
| 74 | 74 | 0.503 |
| 75 | 75 | 0.0175 |
| 76 | 76 | 0.009 |
| 77 | 77 | 0.0864 |
| 78 | 78 | 0.969 |
| 79 | 79 | 0.139 |
| 8 | 8 | 0.552 |
| 80 | 80 | 0.0296 |
| 81 | 81 | 0.145 |
| 82 | 82 | 0.409 |
| 83 | 83 | 0.726 |
| 84 | 84 | 0.747 |
| 85 | 85 | 0.464 |
| 86 | 86 | 0.887 |
| 87 | 87 | 0.951 |
| 88 | 88 | 0.793 |
| 89 | 89 | 0.875 |
| 9 | 9 | 0.498 |
| 90 | 90 | 0.0287 |
| 91 | 91 | 0.681 |
| 92 | 92 | 0.792 |
| 93 | 93 | 0.0535 |
| 94 | 94 | 0.0186 |
| 95 | 95 | 0.254 |
| 96 | 96 | 0.681 |
| 97 | 97 | 0.899 |
| 98 | 98 | 0.235 |
| 99 | 99 | 0.127 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10619
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0010014 human colon - adult sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0001155 (colon)
0000160 (intestine)
0000479 (tissue)
0001007 (digestive system)
0000064 (organ part)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0000059 (large intestine)
0005409 (gastrointestinal system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010014 (human colon - adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)
