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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005030
|DRA_sample_Accession=CAGE@SAMD00005030
|accession_numbers=CAGE;DRX008746;DRR009618;DRZ001043;DRZ002428
|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005030
|accession_numbers=CAGE;DRX008746;DRR009618;DRZ001043;DRZ002428;DRZ012393;DRZ013778
|accession_numbers_RNASeq=RNA-Seq;DRX057115;DRR062874;DRZ007950
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002370,UBERON:0000479,UBERON:0004119,UBERON:0000062,UBERON:0000475,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002368,UBERON:0004177,UBERON:0005057,UBERON:0002530,UBERON:0005058,UBERON:0010317,UBERON:0000153,UBERON:0002390,UBERON:0000949,UBERON:0002193,UBERON:0002405,UBERON:0009113
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002370,UBERON:0000479,UBERON:0004119,UBERON:0000062,UBERON:0000475,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002368,UBERON:0004177,UBERON:0005057,UBERON:0002530,UBERON:0005058,UBERON:0010317,UBERON:0000153,UBERON:0002390,UBERON:0000949,UBERON:0002193,UBERON:0002405,UBERON:0009113
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
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|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/thymus%252c%2520fetal%252c%2520pool1.CNhs10650.10043-101F7.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/thymus%252c%2520fetal%252c%2520pool1.CNhs10650.10043-101F7.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/thymus%252c%2520fetal%252c%2520pool1.CNhs10650.10043-101F7.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/thymus%252c%2520fetal%252c%2520pool1.CNhs10650.10043-101F7.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/thymus%252c%2520fetal%252c%2520pool1.CNhs10650.10043-101F7.hg38.nobarcode.ctss.bed.gz
|id=FF:10043-101F7
|id=FF:10043-101F7
|is_a=EFO:0002091;;FF:0010043
|is_a=EFO:0002091;;FF:0010043
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|library_id=CNhs10650
|library_id=CNhs10650
|library_id_phase_based=2:CNhs10650
|library_id_phase_based=2:CNhs10650
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10043
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10043
|name=thymus, fetal, pool1
|name=thymus, fetal, pool1
|namespace=FANTOM5
|namespace=FANTOM5
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|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|sample_category=tissues
Line 91: Line 104:
|top_motifs=TLX2:3.72434949324;NFY{A,B,C}:2.48460326807;TBP:2.33138856115;FOXO1,3,4:2.12581723215;ELF1,2,4:2.09301107077;LMO2:1.92040451403;RORA:1.76651908811;ETS1,2:1.7655837006;SP1:1.72438490764;TGIF1:1.70450495212;STAT1,3:1.56540712616;RUNX1..3:1.52070379162;HBP1_HMGB_SSRP1_UBTF:1.50467093538;SPZ1:1.46761157441;GATA6:1.45013710444;PATZ1:1.44984397345;SMAD1..7,9:1.41334943326;EP300:1.39791393415;BREu{core}:1.38496431209;BPTF:1.35758200096;DMAP1_NCOR{1,2}_SMARC:1.31781949541;MAZ:1.2431115645;FOXN1:1.19145459492;SPI1:1.18834342643;NRF1:1.1594112192;T:1.15424038537;FOX{D1,D2}:1.15193096807;ZEB1:1.15015904149;SREBF1,2:1.1471074969;RREB1:1.14424639408;MYOD1:1.14264060375;RBPJ:1.13767925905;PAX3,7:1.12209102925;ZNF238:1.10241015425;POU2F1..3:1.09792889858;MZF1:1.07317142554;SNAI1..3:1.06081162261;ZNF143:1.0469299084;IRF1,2:1.0375772187;SPIB:1.02668413479;PBX1:1.01023761605;XCPE1{core}:0.949408194425;GFI1:0.926749695116;RFX2..5_RFXANK_RFXAP:0.917330093574;SOX{8,9,10}:0.911423787652;PAX6:0.84527733159;MYB:0.832049544933;E2F1..5:0.802429995976;SOX5:0.788657082322;FOXA2:0.784720590206;ATF2:0.763798864975;IRF7:0.760398845079;ZNF148:0.743408040643;MYFfamily:0.702929493118;SOX2:0.70223757977;IKZF2:0.680513531973;TFAP4:0.677222812784;HSF1,2:0.66454150196;FOX{F1,F2,J1}:0.628922021834;JUN:0.627735479491;ATF4:0.626874206961;ELK1,4_GABP{A,B1}:0.621207899298;LEF1_TCF7_TCF7L1,2:0.583836159519;AR:0.569714570979;CREB1:0.569652484073;MED-1{core}:0.526049905955;NKX6-1,2:0.520865670607;EGR1..3:0.517457883394;MTE{core}:0.465328346349;FOXP3:0.433311577908;FOXP1:0.427021403247;ZNF384:0.406784963034;NFATC1..3:0.367880527024;ATF5_CREB3:0.317826090252;ZFP161:0.294970997477;NKX2-1,4:0.27489026312;NFKB1_REL_RELA:0.259116626757;EN1,2:0.239081888409;NANOG{mouse}:0.230013354698;MYBL2:0.213785034952;SRF:0.201650315399;NKX2-3_NKX2-5:0.175732559082;POU5F1:0.149553903844;AIRE:0.146831809487;DBP:0.133822912026;NHLH1,2:0.121439796429;TOPORS:0.0932596687468;CDX1,2,4:0.0929889751152;PRDM1:0.0862775040755;GTF2I:0.0166192457498;GTF2A1,2:0.0105907340686;TP53:0.00064029286149;PAX2:-0.00771868797615;HAND1,2:-0.0284266768699;POU3F1..4:-0.044783694041;CUX2:-0.0631808509699;MAFB:-0.0638543461061;MEF2{A,B,C,D}:-0.0722293048209;TBX4,5:-0.106505413647;TFCP2:-0.117838741344;GFI1B:-0.122488604999;CRX:-0.134416006425;GATA4:-0.13570190984;STAT2,4,6:-0.137600593193;HIC1:-0.152158403777;ZBTB16:-0.152192590748;NANOG:-0.166595338429;TAL1_TCF{3,4,12}:-0.16929802603;VSX1,2:-0.188819391994;HMX1:-0.221755681987;FOX{I1,J2}:-0.225020601801;MTF1:-0.244092923252;FOXQ1:-0.244347018833;TFAP2B:-0.266014245235;HNF1A:-0.287124287167;NR3C1:-0.292627283615;PAX5:-0.294895731515;CDC5L:-0.308614497794;GCM1,2:-0.31096848847;HNF4A_NR2F1,2:-0.313423392352;TFDP1:-0.321988333387;TFAP2{A,C}:-0.324783908519;CEBPA,B_DDIT3:-0.324795495622;GLI1..3:-0.353902335581;POU1F1:-0.410714809971;REST:-0.428582639592;SOX17:-0.443704224311;POU6F1:-0.444843581672;NR5A1,2:-0.446868037269;ATF6:-0.452166778689;ARID5B:-0.465285556076;HES1:-0.46580142948;HOXA9_MEIS1:-0.478698946475;KLF4:-0.490179002296;PAX4:-0.492860490983;ESR1:-0.496029486528;OCT4_SOX2{dimer}:-0.499334814591;FOXM1:-0.500170193507;HIF1A:-0.536310139181;PITX1..3:-0.543307857805;NFIL3:-0.556315568032;HMGA1,2:-0.605094721728;YY1:-0.610302500839;AHR_ARNT_ARNT2:-0.61689651681;ZIC1..3:-0.6192413823;TEAD1:-0.634529809276;RFX1:-0.675730226368;PRRX1,2:-0.678191237823;EVI1:-0.688910151314;HLF:-0.704597382857;GZF1:-0.705667176951;bHLH_family:-0.720868215138;FOS_FOS{B,L1}_JUN{B,D}:-0.721371472125;EBF1:-0.757545217246;FOSL2:-0.821869362927;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.825482217421;TLX1..3_NFIC{dimer}:-0.839500626911;BACH2:-0.853158164317;FOXD3:-0.891055804651;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.929658327526;HOX{A6,A7,B6,B7}:-0.931482665126;FOXL1:-0.947075730671;NKX3-2:-0.956809982628;ALX4:-0.972390006854;NFE2:-0.980460419577;RXR{A,B,G}:-1.00122453146;NFE2L2:-1.0079141577;ZNF423:-1.136475041;PAX1,9:-1.16188149252;ALX1:-1.19118903963;NFIX:-1.22215824774;STAT5{A,B}:-1.32937678185;PAX8:-1.34603391875;ADNP_IRX_SIX_ZHX:-1.35313636783;NR1H4:-1.3549257673;LHX3,4:-1.39091337443;NKX3-1:-1.40035194171;HOX{A4,D4}:-1.43551084981;ZBTB6:-1.43703734946;XBP1:-1.46908294541;NKX2-2,8:-1.4790333537;UFEwm:-1.49464474623;NR6A1:-1.51537862402;RXRA_VDR{dimer}:-1.52931720618;PDX1:-1.5556402753;IKZF1:-1.61144942891;TEF:-1.72320186589;NFE2L1:-1.82204747634;ONECUT1,2:-1.89565067391;PPARG:-1.92756669031;ESRRA:-2.10837016065;HOX{A5,B5}:-2.25128302993
|top_motifs=TLX2:3.72434949324;NFY{A,B,C}:2.48460326807;TBP:2.33138856115;FOXO1,3,4:2.12581723215;ELF1,2,4:2.09301107077;LMO2:1.92040451403;RORA:1.76651908811;ETS1,2:1.7655837006;SP1:1.72438490764;TGIF1:1.70450495212;STAT1,3:1.56540712616;RUNX1..3:1.52070379162;HBP1_HMGB_SSRP1_UBTF:1.50467093538;SPZ1:1.46761157441;GATA6:1.45013710444;PATZ1:1.44984397345;SMAD1..7,9:1.41334943326;EP300:1.39791393415;BREu{core}:1.38496431209;BPTF:1.35758200096;DMAP1_NCOR{1,2}_SMARC:1.31781949541;MAZ:1.2431115645;FOXN1:1.19145459492;SPI1:1.18834342643;NRF1:1.1594112192;T:1.15424038537;FOX{D1,D2}:1.15193096807;ZEB1:1.15015904149;SREBF1,2:1.1471074969;RREB1:1.14424639408;MYOD1:1.14264060375;RBPJ:1.13767925905;PAX3,7:1.12209102925;ZNF238:1.10241015425;POU2F1..3:1.09792889858;MZF1:1.07317142554;SNAI1..3:1.06081162261;ZNF143:1.0469299084;IRF1,2:1.0375772187;SPIB:1.02668413479;PBX1:1.01023761605;XCPE1{core}:0.949408194425;GFI1:0.926749695116;RFX2..5_RFXANK_RFXAP:0.917330093574;SOX{8,9,10}:0.911423787652;PAX6:0.84527733159;MYB:0.832049544933;E2F1..5:0.802429995976;SOX5:0.788657082322;FOXA2:0.784720590206;ATF2:0.763798864975;IRF7:0.760398845079;ZNF148:0.743408040643;MYFfamily:0.702929493118;SOX2:0.70223757977;IKZF2:0.680513531973;TFAP4:0.677222812784;HSF1,2:0.66454150196;FOX{F1,F2,J1}:0.628922021834;JUN:0.627735479491;ATF4:0.626874206961;ELK1,4_GABP{A,B1}:0.621207899298;LEF1_TCF7_TCF7L1,2:0.583836159519;AR:0.569714570979;CREB1:0.569652484073;MED-1{core}:0.526049905955;NKX6-1,2:0.520865670607;EGR1..3:0.517457883394;MTE{core}:0.465328346349;FOXP3:0.433311577908;FOXP1:0.427021403247;ZNF384:0.406784963034;NFATC1..3:0.367880527024;ATF5_CREB3:0.317826090252;ZFP161:0.294970997477;NKX2-1,4:0.27489026312;NFKB1_REL_RELA:0.259116626757;EN1,2:0.239081888409;NANOG{mouse}:0.230013354698;MYBL2:0.213785034952;SRF:0.201650315399;NKX2-3_NKX2-5:0.175732559082;POU5F1:0.149553903844;AIRE:0.146831809487;DBP:0.133822912026;NHLH1,2:0.121439796429;TOPORS:0.0932596687468;CDX1,2,4:0.0929889751152;PRDM1:0.0862775040755;GTF2I:0.0166192457498;GTF2A1,2:0.0105907340686;TP53:0.00064029286149;PAX2:-0.00771868797615;HAND1,2:-0.0284266768699;POU3F1..4:-0.044783694041;CUX2:-0.0631808509699;MAFB:-0.0638543461061;MEF2{A,B,C,D}:-0.0722293048209;TBX4,5:-0.106505413647;TFCP2:-0.117838741344;GFI1B:-0.122488604999;CRX:-0.134416006425;GATA4:-0.13570190984;STAT2,4,6:-0.137600593193;HIC1:-0.152158403777;ZBTB16:-0.152192590748;NANOG:-0.166595338429;TAL1_TCF{3,4,12}:-0.16929802603;VSX1,2:-0.188819391994;HMX1:-0.221755681987;FOX{I1,J2}:-0.225020601801;MTF1:-0.244092923252;FOXQ1:-0.244347018833;TFAP2B:-0.266014245235;HNF1A:-0.287124287167;NR3C1:-0.292627283615;PAX5:-0.294895731515;CDC5L:-0.308614497794;GCM1,2:-0.31096848847;HNF4A_NR2F1,2:-0.313423392352;TFDP1:-0.321988333387;TFAP2{A,C}:-0.324783908519;CEBPA,B_DDIT3:-0.324795495622;GLI1..3:-0.353902335581;POU1F1:-0.410714809971;REST:-0.428582639592;SOX17:-0.443704224311;POU6F1:-0.444843581672;NR5A1,2:-0.446868037269;ATF6:-0.452166778689;ARID5B:-0.465285556076;HES1:-0.46580142948;HOXA9_MEIS1:-0.478698946475;KLF4:-0.490179002296;PAX4:-0.492860490983;ESR1:-0.496029486528;OCT4_SOX2{dimer}:-0.499334814591;FOXM1:-0.500170193507;HIF1A:-0.536310139181;PITX1..3:-0.543307857805;NFIL3:-0.556315568032;HMGA1,2:-0.605094721728;YY1:-0.610302500839;AHR_ARNT_ARNT2:-0.61689651681;ZIC1..3:-0.6192413823;TEAD1:-0.634529809276;RFX1:-0.675730226368;PRRX1,2:-0.678191237823;EVI1:-0.688910151314;HLF:-0.704597382857;GZF1:-0.705667176951;bHLH_family:-0.720868215138;FOS_FOS{B,L1}_JUN{B,D}:-0.721371472125;EBF1:-0.757545217246;FOSL2:-0.821869362927;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.825482217421;TLX1..3_NFIC{dimer}:-0.839500626911;BACH2:-0.853158164317;FOXD3:-0.891055804651;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.929658327526;HOX{A6,A7,B6,B7}:-0.931482665126;FOXL1:-0.947075730671;NKX3-2:-0.956809982628;ALX4:-0.972390006854;NFE2:-0.980460419577;RXR{A,B,G}:-1.00122453146;NFE2L2:-1.0079141577;ZNF423:-1.136475041;PAX1,9:-1.16188149252;ALX1:-1.19118903963;NFIX:-1.22215824774;STAT5{A,B}:-1.32937678185;PAX8:-1.34603391875;ADNP_IRX_SIX_ZHX:-1.35313636783;NR1H4:-1.3549257673;LHX3,4:-1.39091337443;NKX3-1:-1.40035194171;HOX{A4,D4}:-1.43551084981;ZBTB6:-1.43703734946;XBP1:-1.46908294541;NKX2-2,8:-1.4790333537;UFEwm:-1.49464474623;NR6A1:-1.51537862402;RXRA_VDR{dimer}:-1.52931720618;PDX1:-1.5556402753;IKZF1:-1.61144942891;TEF:-1.72320186589;NFE2L1:-1.82204747634;ONECUT1,2:-1.89565067391;PPARG:-1.92756669031;ESRRA:-2.10837016065;HOX{A5,B5}:-2.25128302993
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10043-101F7;search_select_hide=table117:FF:10043-101F7
}}
}}

Latest revision as of 12:16, 3 June 2020

Name:thymus, fetal, pool1
Species:Human (Homo sapiens)
Library ID:CNhs10650
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuethymus
dev stage22-34 weeks fetus
sexmixed
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyClontech
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number5040223
catalog numberCat:636586
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005030
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10650 CAGE DRX008746 DRR009618
Accession ID Hg19

Library idBAMCTSS
CNhs10650 DRZ001043 DRZ002428
Accession ID Hg38

Library idBAMCTSS
CNhs10650 DRZ012393 DRZ013778
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
RNA-Seq  SAMD00005030
Library accession numbers

Library idMethodExp. accession idRun accession id
RDhi10057 RNA-Seq DRX057115 DRR062874
Accession ID Hg19

Library idBAMCTSS
RDhi10057 DRZ007950


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0.0262
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.145
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0.00647
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.472
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.0508
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0.0262
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40.0262
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.119
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0.385
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0.0262
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.0956
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0.0262
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.175
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.268
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.43
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0.0262
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0.484
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.357
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.175
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.0262
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.0262
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.112
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0.0262
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0.0262
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0.182
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190.0262
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.137
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.117
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.0508
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140.0262
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0.0742
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.691
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.532
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0852
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.0385
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0.0262
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.0742
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0.0262
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.21
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0665
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.338
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.0508
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0.0262
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0.707
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.037
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.311
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.117
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0.0262
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.0262
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.134
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.0508
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.193
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.0508
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.137
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0.0385
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0.0262
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0.0742
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.725
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.0262
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0.0262
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0.0963
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0.0262
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0.0262
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0.0508
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10650

Jaspar motifP-value
MA0002.20.446
MA0003.10.598
MA0004.10.665
MA0006.10.903
MA0007.10.684
MA0009.10.849
MA0014.10.974
MA0017.10.0864
MA0018.20.0222
MA0019.10.28
MA0024.10.00401
MA0025.10.0408
MA0027.10.841
MA0028.10.0197
MA0029.10.676
MA0030.10.0158
MA0031.10.00161
MA0035.20.0707
MA0038.10.0201
MA0039.20.0219
MA0040.10.948
MA0041.10.892
MA0042.10.863
MA0043.10.393
MA0046.10.69
MA0047.20.206
MA0048.10.0146
MA0050.12.50626e-5
MA0051.10.0925
MA0052.10.227
MA0055.10.0322
MA0057.10.256
MA0058.10.888
MA0059.10.0166
MA0060.17.5864e-17
MA0061.10.587
MA0062.26.47524e-8
MA0065.20.00429
MA0066.10.0393
MA0067.10.856
MA0068.10.00437
MA0069.10.795
MA0070.10.131
MA0071.10.175
MA0072.10.561
MA0073.10.833
MA0074.10.0295
MA0076.11.19081e-4
MA0077.10.831
MA0078.10.18
MA0079.20.0327
MA0080.27.76745e-10
MA0081.10.00712
MA0083.10.916
MA0084.10.85
MA0087.10.72
MA0088.10.4
MA0090.10.0121
MA0091.10.702
MA0092.10.301
MA0093.10.751
MA0099.21.39536e-11
MA0100.10.0258
MA0101.10.928
MA0102.20.843
MA0103.10.192
MA0104.20.43
MA0105.10.0259
MA0106.10.0412
MA0107.10.674
MA0108.21.48202e-15
MA0111.10.837
MA0112.26.33888e-6
MA0113.10.834
MA0114.10.0124
MA0115.10.274
MA0116.10.0971
MA0117.10.89
MA0119.10.0185
MA0122.10.573
MA0124.10.325
MA0125.10.371
MA0131.10.135
MA0135.10.466
MA0136.16.92296e-12
MA0137.20.036
MA0138.20.311
MA0139.10.636
MA0140.10.255
MA0141.18.22725e-5
MA0142.10.0801
MA0143.10.0229
MA0144.10.792
MA0145.10.131
MA0146.10.215
MA0147.10.245
MA0148.10.856
MA0149.10.0264
MA0150.17.91797e-4
MA0152.10.211
MA0153.10.885
MA0154.10.191
MA0155.10.953
MA0156.15.12628e-11
MA0157.10.0562
MA0159.10.0307
MA0160.10.0334
MA0162.10.0923
MA0163.13.20058e-4
MA0164.10.47
MA0258.10.00244
MA0259.10.712



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10650

Novel motifP-value
10.0341
100.104
1000.346
1010.8
1020.991
1030.263
1040.864
1050.444
1060.00905
1070.055
1080.213
1090.0816
110.143
1100.0992
1110.0277
1120.139
1130.149
1144.04424e-4
1150.131
1160.137
1170.681
1180.116
1190.115
120.739
1200.348
1210.133
1220.616
1230.699
1240.318
1250.406
1260.571
1270.806
1280.0652
1290.819
130.248
1300.0247
1310.745
1320.768
1330.592
1340.764
1350.0915
1360.739
1370.307
1380.585
1390.0822
140.664
1400.0178
1410.129
1420.088
1430.784
1440.429
1450.431
1460.562
1470.242
1480.079
1490.0713
150.16
1500.359
1510.538
1520.0355
1530.978
1540.438
1550.415
1560.304
1570.324
1580.966
1590.882
160.0759
1600.0982
1610.74
1620.365
1630.636
1640.0182
1650.972
1660.655
1670.0788
1680.454
1690.00121
170.152
180.0468
190.025
20.786
200.236
210.608
220.152
230.293
240.856
250.694
260.122
270.542
280.741
290.291
30.221
300.505
310.339
320.00731
330.38
340.974
350.246
360.103
370.0382
380.508
390.285
40.938
400.281
410.435
420.87
430.229
440.483
450.847
460.0755
470.296
480.475
490.289
50.314
500.959
510.452
520.51
530.646
540.426
550.234
560.721
570.0544
580.888
590.182
60.626
600.352
610.854
620.553
630.288
640.245
650.261
660.198
670.166
680.448
690.508
70.862
700.0119
710.0636
720.49
730.015
740.574
750.231
760.19
770.0416
780.663
790.289
80.00402
800.0055
810.304
820.247
830.865
840.337
850.0184
860.914
870.375
880.323
890.00868
90.933
900.0485
910.563
920.158
930.82
940.246
950.184
960.813
970.624
980.0718
990.141



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10650


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0002370 (thymus)
0000479 (tissue)
0004119 (endoderm-derived structure)
0000062 (organ)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002368 (endocrine gland)
0004177 (hemopoietic organ)
0005057 (immune organ)
0002530 (gland)
0005058 (hemolymphoid system gland)
0010317 (germ layer / neural crest derived structure)
0000153 (anterior region of body)
0002390 (hematopoietic system)
0000949 (endocrine system)
0002193 (hemolymphoid system)
0002405 (immune system)
0009113 (thymic region)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000999 (fetal tissue sample)
0000004 (tissue sample)
0010043 (human thymus - fetal sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0006603 (presumptive mesoderm)
UBERON:0010316 (germ layer / neural crest)

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