FF:10082-102B1: Difference between revisions

Latest revision as of 12:20, 3 June 2020

Name:	colon, adult, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs11794
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	colon
dev stage	23 years old adult
sex	female
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Clontech
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	8101369A-2
catalog number	Cat: 636643 Lot: 8101369A-2
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005055

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11794		CAGE		DRX008637		DRR009509

Accession ID Hg19

Library id		BAM		CTSS
CNhs11794		DRZ000934		DRZ002319

Accession ID Hg38

Library id		BAM		CTSS
CNhs11794		DRZ012284		DRZ013669

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.478
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.0549
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.00453
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.441
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0.601
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.26
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.0876
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	1.144
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0.975
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.067
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.221
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.331
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.295
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0608
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.1
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0.697
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0.601
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.3
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11794

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.243
MA0003.1	MA0003.1	0.236
MA0004.1	MA0004.1	0.151
MA0006.1	MA0006.1	0.113
MA0007.1	MA0007.1	0.24
MA0009.1	MA0009.1	0.947
MA0014.1	MA0014.1	0.852
MA0017.1	MA0017.1	6.02771e-4
MA0018.2	MA0018.2	0.104
MA0019.1	MA0019.1	0.827
MA0024.1	MA0024.1	0.829
MA0025.1	MA0025.1	0.731
MA0027.1	MA0027.1	0.75
MA0028.1	MA0028.1	1.37605e-6
MA0029.1	MA0029.1	0.874
MA0030.1	MA0030.1	0.0302
MA0031.1	MA0031.1	0.0346
MA0035.2	MA0035.2	0.517
MA0038.1	MA0038.1	0.867
MA0039.2	MA0039.2	0.0922
MA0040.1	MA0040.1	0.808
MA0041.1	MA0041.1	0.675
MA0042.1	MA0042.1	0.849
MA0043.1	MA0043.1	0.00554
MA0046.1	MA0046.1	7.634e-29
MA0047.2	MA0047.2	0.00408
MA0048.1	MA0048.1	0.133
MA0050.1	MA0050.1	0.594
MA0051.1	MA0051.1	0.819
MA0052.1	MA0052.1	0.222
MA0055.1	MA0055.1	0.0652
MA0057.1	MA0057.1	0.344
MA0058.1	MA0058.1	0.0178
MA0059.1	MA0059.1	0.00153
MA0060.1	MA0060.1	0.982
MA0061.1	MA0061.1	2.59139e-4
MA0062.2	MA0062.2	5.2035e-8
MA0065.2	MA0065.2	0.421
MA0066.1	MA0066.1	0.0535
MA0067.1	MA0067.1	0.0585
MA0068.1	MA0068.1	0.632
MA0069.1	MA0069.1	0.21
MA0070.1	MA0070.1	0.744
MA0071.1	MA0071.1	0.968
MA0072.1	MA0072.1	0.415
MA0073.1	MA0073.1	0.797
MA0074.1	MA0074.1	0.987
MA0076.1	MA0076.1	1.08291e-7
MA0077.1	MA0077.1	0.761
MA0078.1	MA0078.1	0.0799
MA0079.2	MA0079.2	0.167
MA0080.2	MA0080.2	0.551
MA0081.1	MA0081.1	0.0078
MA0083.1	MA0083.1	1.76002e-5
MA0084.1	MA0084.1	0.455
MA0087.1	MA0087.1	0.591
MA0088.1	MA0088.1	0.223
MA0090.1	MA0090.1	0.404
MA0091.1	MA0091.1	0.555
MA0092.1	MA0092.1	0.723
MA0093.1	MA0093.1	0.105
MA0099.2	MA0099.2	5.91369e-14
MA0100.1	MA0100.1	0.0937
MA0101.1	MA0101.1	0.00137
MA0102.2	MA0102.2	0.133
MA0103.1	MA0103.1	4.39647e-4
MA0104.2	MA0104.2	0.00313
MA0105.1	MA0105.1	1.84141e-7
MA0106.1	MA0106.1	0.0228
MA0107.1	MA0107.1	0.00227
MA0108.2	MA0108.2	4.61607e-13
MA0111.1	MA0111.1	0.948
MA0112.2	MA0112.2	0.933
MA0113.1	MA0113.1	0.994
MA0114.1	MA0114.1	0.00799
MA0115.1	MA0115.1	0.0298
MA0116.1	MA0116.1	0.00566
MA0117.1	MA0117.1	0.0319
MA0119.1	MA0119.1	0.82
MA0122.1	MA0122.1	0.897
MA0124.1	MA0124.1	0.891
MA0125.1	MA0125.1	0.301
MA0131.1	MA0131.1	0.143
MA0135.1	MA0135.1	0.49
MA0136.1	MA0136.1	0.0117
MA0137.2	MA0137.2	0.159
MA0138.2	MA0138.2	0.397
MA0139.1	MA0139.1	0.201
MA0140.1	MA0140.1	0.281
MA0141.1	MA0141.1	0.303
MA0142.1	MA0142.1	0.516
MA0143.1	MA0143.1	0.0492
MA0144.1	MA0144.1	0.461
MA0145.1	MA0145.1	0.0968
MA0146.1	MA0146.1	0.436
MA0147.1	MA0147.1	0.00131
MA0148.1	MA0148.1	0.0332
MA0149.1	MA0149.1	0.424
MA0150.1	MA0150.1	2.65358e-6
MA0152.1	MA0152.1	0.957
MA0153.1	MA0153.1	4.31298e-15
MA0154.1	MA0154.1	0.342
MA0155.1	MA0155.1	0.825
MA0156.1	MA0156.1	4.074e-4
MA0157.1	MA0157.1	0.94
MA0159.1	MA0159.1	0.741
MA0160.1	MA0160.1	0.591
MA0162.1	MA0162.1	0.791
MA0163.1	MA0163.1	7.48786e-5
MA0164.1	MA0164.1	0.49
MA0258.1	MA0258.1	0.729
MA0259.1	MA0259.1	0.0264

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11794

Novel motif	Logo	P-value
1	1	0.28
10	10	0.0601
100	100	0.296
101	101	0.698
102	102	0.43
103	103	0.0183
104	104	0.931
105	105	0.0818
106	106	0.621
107	107	0.0347
108	108	0.332
109	109	0.618
11	11	0.539
110	110	0.406
111	111	0.157
112	112	0.625
113	113	0.439
114	114	0.108
115	115	0.879
116	116	0.729
117	117	0.0199
118	118	0.298
119	119	0.553
12	12	0.484
120	120	0.148
121	121	0.845
122	122	0.962
123	123	0.0395
124	124	0.737
125	125	0.257
126	126	0.95
127	127	0.111
128	128	0.0195
129	129	0.629
13	13	0.32
130	130	0.844
131	131	0.352
132	132	0.00479
133	133	0.0363
134	134	0.0124
135	135	0.121
136	136	0.767
137	137	0.104
138	138	0.68
139	139	0.37
14	14	0.499
140	140	0.85
141	141	0.282
142	142	0.951
143	143	0.0137
144	144	0.763
145	145	0.14
146	146	0.269
147	147	0.475
148	148	0.91
149	149	0.171
15	15	0.184
150	150	0.605
151	151	0.468
152	152	0.186
153	153	0.867
154	154	0.937
155	155	0.73
156	156	0.556
157	157	0.945
158	158	0.379
159	159	0.517
16	16	0.429
160	160	0.903
161	161	0.506
162	162	0.0914
163	163	0.927
164	164	0.0701
165	165	0.621
166	166	0.476
167	167	0.217
168	168	0.169
169	169	0.375
17	17	0.604
18	18	0.00666
19	19	0.375
2	2	0.0355
20	20	0.125
21	21	0.313
22	22	0.583
23	23	0.385
24	24	0.375
25	25	0.547
26	26	0.564
27	27	0.438
28	28	0.676
29	29	0.0511
3	3	0.7
30	30	0.048
31	31	0.711
32	32	0.749
33	33	0.0885
34	34	0.218
35	35	0.112
36	36	0.0362
37	37	0.262
38	38	0.416
39	39	0.337
4	4	0.967
40	40	0.627
41	41	0.104
42	42	0.357
43	43	0.76
44	44	0.756
45	45	0.17
46	46	0.461
47	47	0.432
48	48	0.527
49	49	0.777
5	5	0.735
50	50	0.434
51	51	0.805
52	52	0.101
53	53	0.164
54	54	0.711
55	55	0.361
56	56	0.639
57	57	0.263
58	58	0.81
59	59	0.841
6	6	0.654
60	60	0.358
61	61	0.819
62	62	0.848
63	63	0.833
64	64	0.971
65	65	0.286
66	66	0.138
67	67	0.0757
68	68	0.861
69	69	0.505
7	7	0.978
70	70	0.337
71	71	0.0781
72	72	0.389
73	73	0.923
74	74	0.426
75	75	0.00661
76	76	0.0166
77	77	0.0327
78	78	0.836
79	79	0.471
8	8	0.973
80	80	0.963
81	81	0.895
82	82	0.494
83	83	0.667
84	84	0.26
85	85	0.403
86	86	0.496
87	87	0.469
88	88	0.872
89	89	0.944
9	9	0.446
90	90	0.00414
91	91	0.0798
92	92	0.511
93	93	0.123
94	94	0.0431
95	95	0.15
96	96	0.444
97	97	0.936
98	98	0.972
99	99	0.0475

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11794

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010014 human colon - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0001155 (colon)
0000160 (intestine)
0000479 (tissue)
0001007 (digestive system)
0000064 (organ part)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0000059 (large intestine)
0005409 (gastrointestinal system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010014 (human colon - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008529
+|DRA_sample_Accession=CAGE@SAMD00005055
-|accession_numbers=CAGE;DRX008637;DRR009509;DRZ000934;DRZ002319
+|accession_numbers=CAGE;DRX008637;DRR009509;DRZ000934;DRZ002319;DRZ012284;DRZ013669
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0001155,UBERON:0000160,UBERON:0000479,UBERON:0001007,UBERON:0000064,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0001555,UBERON:0000059,UBERON:0005409
 |ancestors_in_cell_lineage_facet=
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr5:149546334..149546364,+!p1@CDX1!2.45!279.67!CDX1;;chr1:201979743..201979762,+!p1@ELF3!2.32!209.01!ELF3;;chr4:174451370..174451387,-!p1@HAND2!2.13!133.37!HAND2;;chr2:122042770..122042785,-!p1@TFCP2L1!1.99!96.54!TFCP2L1;;chr1:201979703..201979721,+!p2@ELF3!1.88!75.64!ELF3;;chr6:34524093..34524135,-!p1@SPDEF!1.87!73.65!SPDEF;;chr6:134210243..134210257,+!p1@TCF21!1.86!70.66!TCF21;;chr20:42984330..42984364,+!p2@HNF4A!1.84!67.68!HNF4A;;chr16:86544113..86544145,+!p1@FOXF1!1.82!79.62!FOXF1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.75!54.74!ZBED1;;chr17:46682321..46682362,-!p1@HOXB6!1.73!52.75!HOXB6;;chr7:27192185..27192209,-!p1@HOXA3!1.72!51.75!HOXA3;;chr11:34642612..34642646,+!p1@EHF!1.71!49.76!EHF;;chr19:50922187..50922204,+!p1@SPIB!1.71!49.76!SPIB;;chr19:46801639..46801699,+!p1@HIF3A!1.65!43.79!HIF3A;;chr3:12330560..12330579,+!p1@PPARG!1.64!48.77!PPARG;;chr4:174451350..174451363,-!p3@HAND2!1.60!38.82!HAND2;;chr8:76319876..76319926,+!p1@HNF4G!1.57!35.83!HNF4G;;chr6:135502501..135502546,+!p1@MYB!1.53!38.82!MYB;;chr13:28543431..28543487,-!p1@CDX2!1.52!31.85!CDX2;;chr6:1389789..1389821,+!p1@FOXF2!1.51!42.80!FOXF2;;chr19:46367576..46367592,+!p1@FOXA3!1.50!30.85!FOXA3;;chr13:28543285..28543314,-!p2@CDX2!1.50!30.85!CDX2;;chr8:102504651..102504683,+!p1@GRHL2!1.45!26.87!GRHL2;;chr7:27205136..27205164,-!p1@HOXA9!1.43!25.88!HOXA9;;chr16:85932760..85932775,+!p1@IRF8!1.43!25.88!IRF8;;chr2:176973498..176973524,+!p1@HOXD10!1.43!25.88!HOXD10;;chr1:47903709..47903764,+!p1@BC169308!1.42!28.86!FOXD2;;chr14:38064429..38064486,-!p1@FOXA1!1.41!24.88!FOXA1;;chr4:149363494..149363543,-!p1@NR3C2!1.41!24.88!NR3C2;;chr13:73633131..73633149,+!p1@KLF5!1.40!248.82!KLF5;;chr11:34642656..34642667,+!p2@EHF!1.40!23.89!EHF;;chr5:153857778..153857794,-!p1@HAND1!1.40!23.89!HAND1;;chr4:94749897..94749909,+!p1@ATOH1!1.38!22.89!ATOH1;;chr10:101292684..101292706,+!p1@NKX2-3!1.38!22.89!NKX2-3;;chr13:28543253..28543276,-!p5@CDX2!1.38!22.89!CDX2;;chr12:48298765..48298783,-!p2@VDR!1.37!45.78!VDR;;chr13:28543388..28543406,-!p3@CDX2!1.34!20.90!CDX2;;chr13:28543316..28543329,-!p4@CDX2!1.32!19.91!CDX2;;chr2:177001290..177001315,+!p1@HOXD3!1.32!19.91!HOXD3;;chr19:33793430..33793447,-!p1@CEBPA!1.31!79.62!CEBPA;;chr3:119500941..119500961,+!p1@NR1I2!1.30!18.91!NR1I2;;chr7:27224842..27224872,-!p1@HOXA11!1.28!17.91!HOXA11;;chr11:113930425..113930471,+!p1@ZBTB16!1.26!24.88!ZBTB16;;chr18:45663490..45663528,-!p2@ZBTB7C!1.25!16.92!ZBTB7C;;chr20:43029862..43029900,+!p1@HNF4A!1.25!16.92!HNF4A;;chr17:53342311..53342400,+!p1@HLF!1.24!18.91!HLF;;chr18:19749541..19749557,+!p1@GATA6!1.23!49.76!GATA6;;chr20:62680984..62680999,-!p1@SOX18!1.23!20.90!SOX18;;chr1:209979467..209979494,-!p1@IRF6!1.23!17.91!IRF6;;chr7:27224795..27224840,-!p2@HOXA11!1.23!15.92!HOXA11;;chr13:72441315..72441454,-!p1@DACH1!1.22!30.85!DACH1;;chr2:200323414..200323455,-!p1@SATB2!1.20!31.85!SATB2;;chr16:52581025..52581072,-!p1@TOX3!1.20!14.93!TOX3;;chr17:36105042..36105060,-!p1@HNF1B!1.20!14.93!HNF1B;;chr1:6479968..6479986,-!p1@HES2!1.20!14.93!HES2;;chr20:18038521..18038571,-!p1@OVOL2!1.20!14.93!OVOL2;;chr2:60780753..60780800,-!p1@BCL11A!1.17!67.68!BCL11A;;chr6:391743..391759,+!p1@IRF4!1.17!13.93!IRF4;;chr4:149363475..149363492,-!p2@NR3C2!1.14!12.94!NR3C2;;chr3:24536253..24536328,-!p1@THRB!1.12!22.89!THRB;;chr2:177001268..177001287,+!p3@HOXD3!1.11!11.94!HOXD3;;chr2:200322229..200322251,-!p3@SATB2!1.11!11.94!SATB2;;chr11:113930401..113930422,+!p3@ZBTB16!1.11!11.94!ZBTB16;;chr20:50179368..50179392,-!p2@NFATC2!1.10!14.93!NFATC2;;chr17:38256822..38256851,-!p1@NR1D1!1.09!88.58!NR1D1;;chr7:113726357..113726443,+!p1@FOXP2!1.08!18.91!FOXP2;;chr11:111249993..111250006,-!p1@POU2AF1!1.08!10.95!POU2AF1;;chr11:65554528..65554546,+!p1@OVOL1!1.04!9.95!OVOL1;;chr6:34524049..34524089,-!p2@SPDEF!1.04!9.95!SPDEF;;chr7:27205106..27205134,-!p2@HOXA9!1.04!9.95!HOXA9;;chr1:164528445..164528459,+!p2@PBX1!1.02!29.86!PBX1;;chr18:19749517..19749531,+!p3@GATA6!1.02!16.92!GATA6;;chr16:79634595..79634620,-!p2@MAF!1.01!16.92!MAF;;chr3:169381420..169381535,-!p1@MECOM!1.01!10.95!MECOM;;chr22:38380543..38380569,-!p1@SOX10!1.00!8.96!SOX10;;chr2:176994408..176994492,+!p1@HOXD8!1.00!8.96!HOXD8;;chr4:13546632..13546662,-!p1@NKX3-2!1.00!8.96!NKX3-2;;chr4:57522674..57522699,-!p5@HOPX!1.00!8.96!HOPX;;chr18:19749504..19749515,+!p5@GATA6!1.00!8.96!GATA6;;chr1:10856639..10856662,-!p2@CASZ1!1.00!8.96!CASZ1;;chr1:199996831..199996843,+!p4@NR5A2!1.00!8.96!NR5A2;;chr1:2461692..2461710,-!p1@HES5!1.00!8.96!HES5;;chr11:65554563..65554576,+!p2@OVOL1!1.00!8.96!OVOL1;;chr6:1389824..1389840,+!p3@FOXF2!1.00!8.96!FOXF2;;chr7:27213893..27213954,-!p1@HOXA10!1.00!8.96!HOXA10;;chr12:122516646..122516668,+!p1@MLXIP!0.99!120.43!MLXIP;;chr1:164528410..164528428,+!p1@PBX1!0.97!64.69!PBX1;;chr1:61548225..61548299,+!p1@NFIA!0.96!108.48!NFIA;;chr2:19558373..19558392,-!p1@OSR1!0.96!22.89!OSR1;;chr20:50159198..50159299,-!p1@NFATC2!0.96!11.94!NFATC2;;chr1:151804244..151804310,-!p1@RORC!0.95!7.96!RORC;;chr1:209979411..209979433,-!p2@IRF6!0.95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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000160;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001155;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005409
 |ffid_belonging_in_development=UBERON:0002532,UBERON:0006595,UBERON:0010316
 |fonse_cell_line=
@@ Line 41: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/colon%252c%2520adult%252c%2520donor1.CNhs11794.10082-102B1.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/colon%252c%2520adult%252c%2520donor1.CNhs11794.10082-102B1.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/colon%252c%2520adult%252c%2520donor1.CNhs11794.10082-102B1.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/colon%252c%2520adult%252c%2520donor1.CNhs11794.10082-102B1.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/colon%252c%2520adult%252c%2520donor1.CNhs11794.10082-102B1.hg38.nobarcode.ctss.bed.gz
 |id=FF:10082-102B1
 |is_a=EFO:0002091;;FF:0010014
 |is_obsolete=
 |library_id=CNhs11794
-|library_id_phase_based=1:CNhs11794
+|library_id_phase_based=2:CNhs11794
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10082
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10082
 |name=colon, adult, donor1
 |namespace=FANTOM5
@@ Line 51: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11794,LSID820,release009,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10082-102B1;search_select_hide=table117:FF:10082-102B1
 }}

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FF:10082-102B1: Difference between revisions

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Latest revision as of 12:20, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0