FF:10239-104A5: Difference between revisions

Latest revision as of 13:56, 3 June 2020

Name:	visual cortex - wildtype
Species:	Mouse (Mus musculus)
Library ID:	CNhs13035
Sample type:	tissues
Genomic View:	UCSC
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	Visual cortex
dev stage	postnatal day 30
sex	male
age	P30
cell type	mixed
cell line	N/A
company	N/A
collaboration	Michela Fagiolini/Alka Saxena/Piero Carninci
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	N/A
catalog number	N/A
sample type	Visual cortex tissue
extraction protocol (Details)	Total RNA Trizol Qiagen minElute

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005946

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13035		CAGE		DRX009137		DRR010011

Accession ID Mm9

Library id		BAM		CTSS
CNhs13035		DRZ001436		DRZ002819

Accession ID Mm10

Library id		BAM		CTSS
CNhs13035		DRZ012786		DRZ014169

Download raw sequence, BAM & CTSS

Mm9

Fasta	BAM	CTSS
download	download	donwload

Mm10

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

CNhs13035

0	0
1	0.848
10	0
100	0
1000	0
1001	0
1002	-0.0941
1003	0.337
1004	0
1005	-0.0389
1006	0.677
1007	-0.228
1008	0
1009	-0.19
101	-0.111
1010	0
1011	1.06
1012	0.244
1013	0.127
1014	-0.0851
1015	-0.0585
1016	-0.337
1017	0
1018	0
1019	0
102	0
1020	0.604
1021	0
1022	-0.0704
1023	0
1024	-0.0899
1025	0
1026	0
1027	0.497
1028	0
1029	0.0615
103	-0.0848
1030	0
1031	-0.627
1032	0.0829
1033	0
1034	0
1035	0
1036	-0.183
1037	0
1038	-0.0337
1039	0.0616
104	0
1040	-0.216
1041	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13035

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0133
MA0003.1	MA0003.1	0.293
MA0004.1	MA0004.1	0.564
MA0006.1	MA0006.1	0.0941
MA0007.1	MA0007.1	0.344
MA0009.1	MA0009.1	0.667
MA0014.1	MA0014.1	0.738
MA0017.1	MA0017.1	4.56049e-7
MA0018.2	MA0018.2	0.017
MA0019.1	MA0019.1	0.172
MA0024.1	MA0024.1	0.0163
MA0025.1	MA0025.1	0.0797
MA0027.1	MA0027.1	0.0707
MA0028.1	MA0028.1	0.0415
MA0029.1	MA0029.1	0.521
MA0030.1	MA0030.1	0.501
MA0031.1	MA0031.1	0.0256
MA0035.2	MA0035.2	0.0181
MA0038.1	MA0038.1	0.606
MA0039.2	MA0039.2	0.00215
MA0040.1	MA0040.1	0.073
MA0041.1	MA0041.1	0.298
MA0042.1	MA0042.1	0.437
MA0043.1	MA0043.1	0.384
MA0046.1	MA0046.1	2.79799e-10
MA0047.2	MA0047.2	8.10748e-4
MA0048.1	MA0048.1	0.0454
MA0050.1	MA0050.1	9.27572e-6
MA0051.1	MA0051.1	7.1989e-4
MA0052.1	MA0052.1	0.856
MA0055.1	MA0055.1	0.0106
MA0057.1	MA0057.1	0.594
MA0058.1	MA0058.1	0.388
MA0059.1	MA0059.1	0.309
MA0060.1	MA0060.1	0.0261
MA0061.1	MA0061.1	0.0307
MA0062.2	MA0062.2	1.4104e-4
MA0065.2	MA0065.2	4.91823e-6
MA0066.1	MA0066.1	0.15
MA0067.1	MA0067.1	0.539
MA0068.1	MA0068.1	0.199
MA0069.1	MA0069.1	0.0462
MA0070.1	MA0070.1	0.952
MA0071.1	MA0071.1	0.0434
MA0072.1	MA0072.1	0.243
MA0073.1	MA0073.1	0.873
MA0074.1	MA0074.1	0.132
MA0076.1	MA0076.1	0.0774
MA0077.1	MA0077.1	0.575
MA0078.1	MA0078.1	0.926
MA0079.2	MA0079.2	0.93
MA0080.2	MA0080.2	1.27549e-10
MA0081.1	MA0081.1	0.212
MA0083.1	MA0083.1	3.4634e-4
MA0084.1	MA0084.1	0.561
MA0087.1	MA0087.1	0.54
MA0088.1	MA0088.1	0.343
MA0090.1	MA0090.1	0.131
MA0091.1	MA0091.1	0.367
MA0092.1	MA0092.1	0.254
MA0093.1	MA0093.1	0.585
MA0099.2	MA0099.2	0.00503
MA0100.1	MA0100.1	0.338
MA0101.1	MA0101.1	0.00712
MA0102.2	MA0102.2	0.269
MA0103.1	MA0103.1	0.388
MA0104.2	MA0104.2	0.914
MA0105.1	MA0105.1	0.0419
MA0106.1	MA0106.1	0.0887
MA0107.1	MA0107.1	0.0155
MA0108.2	MA0108.2	1.21104e-5
MA0111.1	MA0111.1	0.738
MA0112.2	MA0112.2	0.00268
MA0113.1	MA0113.1	0.255
MA0114.1	MA0114.1	5.8289e-6
MA0115.1	MA0115.1	7.7563e-4
MA0116.1	MA0116.1	0.178
MA0117.1	MA0117.1	0.788
MA0119.1	MA0119.1	0.143
MA0122.1	MA0122.1	0.765
MA0124.1	MA0124.1	0.824
MA0125.1	MA0125.1	0.27
MA0131.1	MA0131.1	0.74
MA0135.1	MA0135.1	0.318
MA0136.1	MA0136.1	5.25452e-12
MA0137.2	MA0137.2	0.169
MA0138.2	MA0138.2	0.0015
MA0139.1	MA0139.1	0.562
MA0140.1	MA0140.1	8.18981e-4
MA0141.1	MA0141.1	0.00325
MA0142.1	MA0142.1	0.594
MA0143.1	MA0143.1	0.493
MA0144.1	MA0144.1	0.111
MA0145.1	MA0145.1	0.0933
MA0146.1	MA0146.1	0.0127
MA0147.1	MA0147.1	0.966
MA0148.1	MA0148.1	4.38299e-4
MA0149.1	MA0149.1	0.376
MA0150.1	MA0150.1	0.281
MA0152.1	MA0152.1	0.898
MA0153.1	MA0153.1	3.67898e-10
MA0154.1	MA0154.1	0.0609
MA0155.1	MA0155.1	0.309
MA0156.1	MA0156.1	6.50832e-11
MA0157.1	MA0157.1	0.0526
MA0159.1	MA0159.1	0.0179
MA0160.1	MA0160.1	0.00693
MA0162.1	MA0162.1	0.199
MA0163.1	MA0163.1	0.00724
MA0164.1	MA0164.1	0.913
MA0258.1	MA0258.1	0.0735
MA0259.1	MA0259.1	0.735

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13035

Novel motif	Logo	P-value
1	1	0.403
10	10	0.084
100	100	0.52
101	101	0.442
102	102	0.935
103	103	0.278
104	104	0.909
105	105	0.536
106	106	0.0409
107	107	0.138
108	108	0.361
109	109	0.00211
11	11	0.0938
110	110	0.0558
111	111	0.485
112	112	0.0169
113	113	0.345
114	114	0.74
115	115	0.821
116	116	0.388
117	117	0.00508
118	118	0.687
119	119	0.191
12	12	0.864
120	120	0.846
121	121	0.0475
122	122	0.967
123	123	5.75021e-4
124	124	0.026
125	125	0.741
126	126	0.0474
127	127	0.661
128	128	0.066
129	129	0.442
13	13	6.10764e-9
130	130	0.0296
131	131	0.509
132	132	0.735
133	133	0.36
134	134	0.0482
135	135	0.529
136	136	0.00813
137	137	0.483
138	138	0.682
139	139	0.692
14	14	0.784
140	140	0.323
141	141	0.991
142	142	0.959
143	143	0.637
144	144	0.487
145	145	5.84465e-5
146	146	0.174
147	147	0.0992
148	148	0.533
149	149	0.342
15	15	0.33
150	150	0.0353
151	151	0.877
152	152	0.062
153	153	0.957
154	154	0.992
155	155	0.355
156	156	3.04106e-9
157	157	0.163
158	158	0.322
159	159	0.657
160	160	0.319
161	161	0.0708
162	162	0.611
163	163	0.738
164	164	0.0779
165	165	0.135
166	166	0.696
167	167	0.248
168	168	0.568
169	169	0.00411
17	17	0.0643
18	18	0.776
19	19	0.0684
2	2	0.846
20	20	0.0426
21	21	0.26
22	22	0.0761
23	23	0.675
24	24	0.00941
25	25	0.972
26	26	1.82929e-6
27	27	0.379
28	28	0.706
29	29	0.0277
3	3	0.0562
30	30	0.913
31	31	0.857
32	32	0.763
33	33	0.195
34	34	0.427
35	35	0.409
36	36	0.492
37	37	0.0175
38	38	0.353
39	39	0.203
4	4	0.178
40	40	0.126
41	41	0.517
42	42	0.197
43	43	0.148
44	44	0.966
45	45	0.557
46	46	0.232
47	47	0.574
48	48	0.319
49	49	0.349
5	5	0.446
50	50	0.152
51	51	0.786
52	52	0.172
53	53	0.57
54	54	0.973
55	55	0.992
56	56	0.466
57	57	0.978
58	58	0.399
59	59	0.135
6	6	0.87
60	60	0.0348
61	61	0.0437
62	62	0.285
63	63	0.135
64	64	0.696
65	65	0.304
66	66	0.494
67	67	0.957
68	68	0.396
69	69	0.218
7	7	0.0195
70	70	0.433
71	71	0.00775
72	72	0.404
73	73	0.0218
74	74	0.44
75	75	0.0543
76	76	0.744
77	77	0.417
78	78	0.00149
79	79	0.389
8	8	0.149
80	80	0.691
81	81	0.746
82	82	0.372
83	83	0.0317
84	84	0.792
85	85	0.268
86	86	0.212
87	87	0.0155
88	88	0.558
89	89	0.922
9	9	0.366
90	90	0.963
91	91	0.169
92	92	0.461
93	93	0.554
94	94	0.983
95	95	0.0169
96	96	0.594
97	97	0.829
98	98	0.476
99	99	0.53

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13035

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011269 mouse visual cortex from wildtype- neonate N30 sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000955 (brain)
0002021 (occipital lobe)
0000411 (visual cortex)
0000956 (cerebral cortex)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0002619 (regional part of cerebral cortex)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)
0001950 (neocortex)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000004 (tissue sample)
0000303 (neonate sample - mouse)
0000310 (mouse neonate N30 sample)
0011269 (mouse visual cortex from wildtype- neonate N30 sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)
FF:0000294 (mouse embryonic day 11 sample)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005946
+|accession_numbers=CAGE;DRX009137;DRR010011;DRZ001436;DRZ002819;DRZ012786;DRZ014169
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000955,UBERON:0002021,UBERON:0000411,UBERON:0000956,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0002619,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0001950
 |ancestors_in_cell_lineage_facet=
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
+|donor= donor2
 |expression_enrichment_score=chr16:91270004..91270023,+!p1@Olig1!2.14!154.10!Olig1;;chr10:67375368..67375433,-!p1@Zfp365!2.10!213.78!Zfp365;;chr19:4989964..4989972,-!p1@Npas4!1.91!80.83!Npas4;;chr11:98190918..98190951,-!p1@Neurod2!1.83!67.23!Neurod2;;chr19:19185671..19185693,-!p1@Rorb!1.77!133.70!Rorb;;chr10:67375342..67375365,-!p3@Zfp365!1.76!56.65!Zfp365;;chr7:116154364..116154444,+!p1@Tub!1.75!92.91!Tub;;chr12:30219426..30219506,+!p2@Myt1l!1.74!53.63!Myt1l;;chr6:55631042..55631102,-!p1@Neurod6!1.73!52.12!Neurod6;;chr5:138199361..138199441,+!p2@Tsc22d4!1.69!88.38!Tsc22d4;;chr1:42752574..42752621,+!p@chr1:42752574..42752621,+!1.66!56.65!Pou3f3;;chr2:61642631..61642684,+!p1@Tbr1!1.64!42.30!Tbr1;;chr8:24780125..24780143,+!p1@Zmat4!1.63!59.68!Zmat4;;chr2:127347067..127347093,-!p1@Kcnip3!1.61!64.96!Kcnip3;;chr17:48015839..48015915,-!p3@Foxp4!1.61!46.83!Foxp4;;chr13:83663546..83663560,+!p4@Mef2c!1.60!49.86!Mef2c;;chr2:38206580..38206600,+!p2@Lhx2!1.60!47.59!Lhx2;;chr10:67375146..67375208,-!p2@Zfp365!1.59!56.65!Zfp365;;chr5:122452349..122452377,-!p4@Cux2!1.58!37.01!Cux2;;chr13:83663902..83663927,+!p1@Mef2c!1.57!830.18!Mef2c;;chr15:76352677..76352737,-!p3@Scrt1!1.56!35.50!Scrt1;;chrX:90531838..90531861,+!p1@Arx!1.52!40.04!Arx;;chr13:83663868..83663894,+!p2@Mef2c!1.51!429.06!Mef2c;;chr13:83663500..83663519,+!p8@Mef2c!1.50!30.97!Mef2c;;chr4:58956447..58956510,+!p1@Zkscan16!1.48!61.94!Zkscan16;;chr2:65683890..65683907,+!p1@Csrnp3!1.45!51.37!Csrnp3;;chr5:122499831..122499891,-!p1@Cux2!1.45!41.55!Cux2;;chr5:98609885..98609900,+!p1@Prdm8!1.44!26.44!Prdm8;;chr6:85463580..85463585,-!p1@Egr4!1.43!25.68!Egr4;;chr15:76353005..76353021,-!p2@Scrt1!1.43!25.68!Scrt1;;chr19:19185697..19185711,-!p2@Rorb!1.42!31.73!Rorb;;chr2:38206744..38206766,+!p1@Lhx2!1.40!28.70!Lhx2;;chr3:95032091..95032183,-!p1@Mllt11!1.39!194.14!Mllt11;;chr15:76352434..76352488,-!p4@Scrt1!1.39!23.42!Scrt1;;chr2:65768174..65768247,+!p2@Csrnp3!1.39!23.42!Csrnp3;;chr1:179374784..179374800,+!p2@Zfp238!1.37!26.44!Zfp238;;chr12:86939997..86940040,+!p4@Jdp2!1.36!21.91!Jdp2;;chr16:91225808..91225824,+!p1@Olig2!1.33!20.40!Olig2;;chr1:57029281..57029326,-!p1@Satb2!1.32!30.97!Satb2;;chrX:34442872..34442899,-!p1@Nkrf!1.31!24.93!Nkrf;;chr7:148008023..148008092,-!p1@Zfp941!1.30!45.32!Zfp941;;chr2:61642558..61642595,+!p3@Tbr1!1.30!18.88!Tbr1;;chr12:30213247..30213333,+!p1@Myt1l!1.28!18.13!Myt1l;;chr13:83643031..83643049,+!p11@Mef2c!1.28!18.13!Mef2c;;chr11:90250944..90250982,-!p2@Hlf!1.25!27.95!Hlf;;chr2:127347094..127347111,-!p2@Kcnip3!1.25!27.19!Kcnip3;;chr11:98636531..98636559,-!p1@Nr1d1!1.23!89.14!Nr1d1;;chr16:91270091..91270143,+!p2@Olig1!1.23!15.86!Olig1;;chr10:13685585..13685645,+!p2@Hivep2!1.22!53.63!Hivep2;;chr2:77654815..77654872,-!p2@Zfp385b!1.22!19.64!Zfp385b;;chr17:25707623..25707639,-!p1@Sox8!1.21!64.96!Sox8;;chr4:22415443..22415506,-!p1@Pou3f2!1.21!15.11!Pou3f2;;chr13:78339134..78339185,-!p5@Nr2f1!1.20!18.13!Nr2f1;;chrX:95345005..95345053,+!p1@Ar!1.19!14.35!Ar;;chr2:127347042..127347058,-!p3@Kcnip3!1.19!14.35!Kcnip3;;chr18:36441119..36441158,+!p2@Pura!1.14!30.97!Pura;;chr18:69680960..69681007,+!p10@Tcf4!1.14!16.62!Tcf4;;chr12:72149325..72149343,+!p2@Arid4a!1.13!17.37!Arid4a;;chr11:98190955..98190968,-!p2@Neurod2!1.12!12.09!Neurod2;;chr4:154335024..154335039,+!p1@Hes5!1.11!14.35!Hes5;;chr6:117813087..117813121,+!p1@Zfp239!1.10!43.81!Zfp239;;chr4:150482563..150482655,-!p2@Camta1!1.09!40.79!Camta1;;chr2:61642743..61642758,+!p2@Tbr1!1.09!11.33!Tbr1;;chr7:91521166..91521194,-!p11@Arnt2!1.09!11.33!Arnt2;;chr11:70501419..70501483,-!p1@Camta2,p1@LOC100048818!1.08!114.06!Camta2;;chr11:90252223..90252240,-!p1@Hlf!1.07!90.65!Hlf;;chr7:52960730..52960762,+!p3@Dbp!1.07!13.60!Dbp;;chr8:87297878..87297935,-!p3@Nfix!1.06!23.42!Nfix;;chr2:162769220..162769252,+!p1@L3mbtl1!1.06!10.58!L3mbtl1;;chr7:30094448..30094481,+!p4@Dpf1!1.04!12.09!Dpf1;;chr4:150513630..150513686,-!p4@Camta1!1.04!11.33!Camta1;;chr13:83643136..83643158,+!p7@Mef2c!1.03!9.82!Mef2c;;chr12:30220074..30220102,+!p3@Myt1l!1.03!9.82!Myt1l;;chr7:91520922..91520956,-!p5@Arnt2!1.03!9.82!Arnt2;;chr1:179374820..179374831,+!p3@Zfp238!1.03!9.82!Zfp238;;chr19:26681865..26681900,+!p6@Smarca2!1.02!27.95!Smarca2;;chr12:54349410..54349461,+!p1@Npas3!1.02!11.33!Npas3;;chr19:59533221..59533271,+!p1@Emx2!1.01!11.33!Emx2;;chr15:76352832..76352900,-!p1@Scrt1!1.00!9.06!Scrt1;;chr14:70477113..70477173,+!p1@Egr3!1.00!9.06!Egr3;;chr10:84218800..84218829,+!p2@Rfx4!1.00!9.06!Rfx4;;chr7:71083876..71083932,-!p2@Klf13!0.98!70.25!Klf13;;chr6:72850124..72850210,-!p7@Kcmf1!0.98!11.33!Kcmf1;;chr7:52960700..52960719,+!p2@Dbp!0.98!10.58!Dbp;;chr11:90251852..90251855,-!p4@Hlf!0.98!10.58!Hlf;;chr2:25562263..25562314,+!p2@Bmyc!0.97!33.24!Bmyc;;chr7:91558472..91558512,-!p2@Arnt2!0.97!12.09!Arnt2;;chr6:85137520..85137563,+!p1@Emx1!0.97!8.31!Emx1;;chr11:98603119..98603130,+!p2@Thra!0.96!71.76!Thra;;chr19:23216132..23216157,+!p3@Klf9!0.96!12.84!Klf9;;chr13:78339428..78339466,-!p2@Nr2f1!0.96!11.33!Nr2f1;;chr2:44972821..44972865,-!p10@Zeb2!0.94!15.86!Zeb2;;chr5:125342568..125342602,+!p2@Zfp664!0.94!12.84!Zfp664;;chr3:95032197..95032208,-!p3@Mllt11!0.94!9.82!Mllt11;;chr7:52960780..52960793,+!p5@Dbp!0.94!9.06!Dbp;;chr13:44936126..44936164,+!p6@Jarid2!0.94!9.06!Jarid2;;chr3:95032213..95032226,-!p6@Mllt11!0.93!9.06!Mllt11;;chr3:34548946..34548972,+!p2@Sox2!0.93!8.31!Sox2;;chr13:83643232..83643254,+!p5@Mef2c!0.93!7.55!Mef2c;;chr14:70476975..70476997,+!p2@Egr3!0.93!7.55!Egr3;;chr19:19185429..19185440,-!p3@Rorb!0.93!7.55!Rorb;;chr1:57028606..57028625,-!p4@Satb2!0.93!7.55!Satb2;;chr1:179374764..179374776,+!p5@Zfp238!0.93!7.55!Zfp238;;chr1:57028157..57028173,-!p3@Satb2!0.93!7.55!Satb2;;chr2:168427068..168427115,-!p3@Nfatc2!0.93!7.55!Nfatc2;;chr7:91520957..91520973,-!p9@Arnt2!0.93!7.55!Arnt2;;chrX:34442842..34442866,-!p3@Nkrf!0.93!7.55!Nkrf;;chr18:35020854..35020869,+!p1@Egr1!0.92!294.60!Egr1;;chr11:23978111..23978134,+!p3@Bcl11a!0.92!15.86!Bcl11a;;chr4:135840573..135840601,+!p1@Zfp46!0.91!58.92!Zfp46;;chr15:78994907..78994926,-!p1@Sox10!0.91!18.88!Sox10;;chr11:98603185..98603208,+!p1@Thra!0.90!442.66!Thra;;chr14:18493386..18493464,+!p1@Thrb!0.89!27.19!Thrb;;chr13:44936077..44936096,+!p9@Jarid2!0.89!6.80!Jarid2;;chr13:83643302..83643309,+!p12@Mef2c!0.89!6.80!Mef2c;;chr14:13178361..13178386,-!p2@Fezf2!0.89!6.80!Fezf2;;chr2:79296783..79296801,-!p1@Neurod1!0.89!6.80!Neurod1;;chr2:163051181..163051205,+!p2@Tox2!0.89!6.80!Tox2;;chr2:65768149..65768173,+!p4@Csrnp3!0.89!6.80!Csrnp3;;chr1:179372411..179372509,+!p1@Zfp238!0.88!88.38!Zfp238;;chr10:80893711..80893784,-!p3@Nfic!0.87!35.50!Nfic;;chr15:103170533..103170556,-!p1@Zfp385a!0.87!24.93!Zfp385a;;chr7:30092993..30093076,+!p1@Dpf1!0.87!11.33!Dpf1;;chr8:79423672..79423727,+!p2@Nr3c2!0.87!8.31!Nr3c2;;chr13:83663600..83663625,+!p6@Mef2c!0.86!9.82!Mef2c;;chr15:100325682..100325698,-!p1@Csrnp2!0.85!30.22!Csrnp2;;chr2:56967334..56967366,-!p1@Nr4a2!0.85!12.84!Nr4a2;;chr4:48058129..48058179,+!p2@Nr4a3!0.85!12.09!Nr4a3;;chr3:95032184..95032195,-!p4@Mllt11!0.85!7.55!Mllt11;;chr2:81893447..81893468,+!p2@Zfp804a!0.85!6.04!Zfp804a;;chr4:119487109..119487131,+!p4@Hivep3!0.85!6.04!Hivep3;;chr3:34549096..34549111,+!p3@Sox2!0.85!6.04!Sox2;;chr12:50485973..50486015,+!p2@Foxg1!0.85!6.04!Foxg1;;chr7:146768691..146768707,-!p1@Nkx6-2!0.85!6.04!Nkx6-2;;chr6:144152648..144152680,-!p5@Sox5!0.85!6.04!Sox5;;chr1:57028556..57028583,-!p5@Satb2!0.85!6.04!Satb2;;chr10:42303385..42303401,-!p1@Nr2e1!0.85!6.04!Nr2e1;;chr10:67375223..67375240,-!p4@Zfp365!0.84!6.80!Zfp365;;chr9:36954842..36954908,-!p1@Pknox2!0.83!71.01!Pknox2;;chr9:48644306..48644364,-!p1@Zbtb16!0.83!24.93!Zbtb16;;chr10:82226613..82226641,-!p4@Nfyb!0.83!16.62!Nfyb;;chr15:81641878..81641921,+!p1@Tef!0.82!154.10!Tef;;chr7:17200307..17200370,-!p2@Grlf1!0.82!43.81!Grlf1;;chr8:125897750..125897758,+!p2@Tcf25!0.82!40.79!Tcf25;;chr6:108610766..108610781,+!p2@Bhlhe40!0.82!10.58!Bhlhe40;;chr3:34548909..34548927,+!p1@Sox2!0.82!9.82!Sox2;;chr11:23980664..23980706,+!p2@Bcl11a!0.81!25.68!Bcl11a;;chr7:91558392..91558434,-!p1@Arnt2!0.81!15.86!Arnt2;;chr8:87297280..87297326,-!p2@Nfix!0.81!13.60!Nfix;;chr11:23978078..23978096,+!p4@Bcl11a!0.80!17.37!Bcl11a;;chr7:37483231..37483263,+!p2@Tshz3!0.80!8.31!Tshz3;;chr13:78338288..78338309,-!p7@Nr2f1!0.80!6.04!Nr2f1;;chr14:13178147..13178185,-!p1@Fezf2!0.80!5.29!Fezf2;;chr9:96631820..96631834,-!p11@Zbtb38!0.80!5.29!Zbtb38;;chr11:21901608..21901634,-!p1@Otx1!0.80!5.29!Otx1;;chr2:163030219..163030258,+!p5@Tox2!0.80!5.29!Tox2;;chr15:100430414..100430470,-!p1@Pou6f1!0.79!17.37!Pou6f1;;chr6:145814003..145814056,-!p1@Bhlhe41!0.79!15.86!Bhlhe41;;chr4:13670499..13670526,+!p2@Runx1t1!0.79!12.09!Runx1t1;;chr19:23215469..23215494,+!p2@Klf9!0.79!8.31!Klf9;;chr3:95032558..95032641,-!p2@Mllt11!0.78!30.22!Mllt11;;chr5:122500142..122500167,-!p2@Cux2!0.78!11.33!Cux2;;chr15:103170561..103170572,-!p4@Zfp385a!0.78!7.55!Zfp385a;;chr12:72149359..72149406,+!p4@Arid4a!0.78!6.80!Arid4a;;chr19:23216166..23216191,+!p6@Klf9!0.78!6.80!Klf9;;chr10:13685657..13685677,+!p7@Hivep2!0.78!6.80!Hivep2;;chr13:78339382..78339420,-!p3@Nr2f1!0.78!6.04!Nr2f1;;chr10:13685899..13685916,+!p1@Hivep2!0.77!55.90!Hivep2;;chr8:112603610..112603656,+!p1@Zfp612!0.77!24.17!Zfp612;;chr6:145813905..145813932,-!p2@Bhlhe41!0.77!9.82!Bhlhe41;;chr18:69753168..69753186,+!p12@Tcf4!0.77!6.80!Tcf4;;chr7:91558537..91558558,-!p4@Arnt2!0.77!6.04!Arnt2;;chr10:30522690..30522752,-!p2@Ncoa7!0.76!31.73!Ncoa7;;chr17:51971932..51971958,-!p2@Satb1!0.76!6.80!Satb1;;chr7:30088977..30089002,+!p2@Dpf1!0.76!6.80!Dpf1;;chr9:31720843..31720888,-!p1@Barx2!0.76!5.29!Barx2;;chr15:81633165..81633188,+!p2@Tef!0.75!42.30!Tef;;chr9:68501522..68501538,+!p4@Rora!0.75!9.06!Rora;;chr1:39250584..39250643,+!p1@Npas2!0.74!24.93!Npas2;;chrX:45245644..45245666,-!p2@Smarca1!0.74!15.86!Smarca1;;chr8:107793688..107793736,+!p1@Hsf4!0.74!6.04!Hsf4;;chr11:23978229..23978268,+!p8@Bcl11a!0.74!5.29!Bcl11a;;chr11:90250894..90250916,-!p5@Hlf!0.74!4.53!Hlf;;chr11:90252108..90252134,-!p6@Hlf!0.74!4.53!Hlf;;chr11:90250999..90251013,-!p8@Hlf!0.74!4.53!Hlf;;chr7:52960888..5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cf4;;chr7:30601080..30601172,+!p1@Zfp790!0.24!18.88!Zfp790;;chr13:65380118..65380146,+!p2@Zfp369!0.24!9.82!Zfp369;;chr15:100382390..100382441,-!p1@Tfcp2!0.24!9.82!Tfcp2;;chr5:34530293..34530318,-!p2@Mxd4!0.24!8.31!Mxd4;;chr17:84105510..84105540,+!p2@Mta3!0.24!7.55!Mta3;;chr8:72663347..72663398,+!p2@2310045N01Rik,p2@Mef2b!0.24!7.55!Mef2b;;chr7:25039763..25039831,+!p1@Zfp108!0.24!6.80!Zfp108;;chr7:13466514..13466553,+!p1@Zfp128!0.24!6.80!Zfp128;;chr6:118405493..118405536,-!p1@Zfp248!0.24!5.29!Zfp248;;chr7:4866835..4866858,+!p2@Zfp628!0.24!5.29!Zfp628;;chr11:80196900..80196917,+!p3@Zfp207!0.24!4.53!Zfp207;;chr2:152223881..152223933,-!p3@Sox12!0.24!4.53!Sox12;;chr3:88753953..88754004,+!p1@Ash1l!0.24!4.53!Ash1l;;chr8:118230894..118230918,-!p5@Maf!0.24!3.78!Maf;;chr7:74517732..74517743,-!p4@Mef2a!0.24!2.27!Mef2a;;chr12:39507680..39507715,+!p2@Etv1!0.24!2.27!Etv1;;chr18:79306577..79306592,-!p3@Setbp1!0.24!2.27!Setbp1;;chr19:25746898..25746910,+!p1@Dmrt2!0.24!1.51!Dmrt2;;chr17:44872524..44872537,-!p9@Runx2!0.24!0.76!Runx2;;chr19:28085572..28085579,-!p9@Rfx3!0.24!0.76!Rfx3;;chr17:51972400..51972428,-!p11@Satb1!0.24!0.76!Satb1;;chr17:51972438..51972463,-!p8@Satb1!0.24!0.76!Satb1;;chr19:23215616..23215627,+!p9@Klf9!0.24!0.76!Klf9;;chr17:51971991..51972003,-!p4@Satb1!0.24!0.76!Satb1;;chr15:96117679..96117696,+!p6@Arid2!0.24!0.76!Arid2;;chr17:44951431..44951445,-!p3@Runx2!0.24!0.76!Runx2;;chr18:69681228..69681237,+!p44@Tcf4!0.24!0.76!Tcf4;;chr17:51971209..51971220,-!p43@Satb1!0.24!0.76!Satb1;;chr17:48015824..48015836,-!p11@Foxp4!0.24!0.76!Foxp4;;chr17:51972575..51972595,-!p13@Satb1!0.24!0.76!Satb1;;chr16:91225654..91225671,+!p2@Olig2!0.24!0.76!Olig2;;chr16:43510380..43510393,+!p39@Zbtb20!0.24!0.76!Zbtb20;;chr16:43236037..43236050,+!p35@Zbtb20!0.24!0.76!Zbtb20;;chr18:5593880..5593898,+!p13@Zeb1!0.24!0.76!Zeb1;;chr18:5594197..5594228,+!p7@Zeb1!0.24!0.76!Zeb1;;chr17:51951662..51951670,-!p21@Satb1!0.24!0.76!Satb1;;chr18:84256138..84256150,-!p7@Tshz1!0.24!0.76!Tshz1;;chr18:5593345..5593349,+!p14@Zeb1!0.24!0.76!Zeb1;;chr16:43364012..43364030,+!p22@Zbtb20!0.24!0.76!Zbtb20;;chr4:107353376..107353452,-!p3@Dmrtb1!0.24!0.76!Dmrtb1;;chr2:91077026..91077029,-!p5@Ddb2!0.24!0.76!Ddb2;;chr3:99057677..99057730,+!p2@Tbx15!0.24!0.76!Tbx15;;chr3:8667049..8667056,-!p5@Hey1!0.24!0.76!Hey1;;chr4:89354785..89354801,+!p2@Dmrta1!0.24!0.76!Dmrta1;;chr3:17954258..17954267,+!p7@Bhlhe22!0.24!0.76!Bhlhe22;;chr2:71368786..71368813,+!p5@Dlx1!0.24!0.76!Dlx1;;chr3:34548845..34548856,+!p4@Sox2!0.24!0.76!Sox2;;chr4:109650609..109650653,+!p1@Dmrta2!0.24!0.76!Dmrta2;;chr4:107353508..107353547,-!p4@Dmrtb1!0.24!0.76!Dmrtb1;;chr4:119960275..119960288,-!p2@Foxo6!0.24!0.76!Foxo6;;chr2:77654793..77654805,-!p7@Zfp385b!0.24!0.76!Zfp385b;;chr2:77654767..77654784,-!p12@Zfp385b!0.24!0.76!Zfp385b;;chr4:48058196..48058205,+!p4@Nr4a3!0.24!0.76!Nr4a3;;chr4:48058252..48058261,+!p6@Nr4a3!0.24!0.76!Nr4a3;;chr4:13678514..13678539,+!p14@Runx1t1!0.24!0.76!Runx1t1;;chr4:13678482..13678505,+!p9@Runx1t1!0.24!0.76!Runx1t1;;chr4:48064149..48064169,+!p9@Nr4a3!0.24!0.76!Nr4a3;;chr4:48064302..48064316,+!p11@Nr4a3!0.24!0.76!Nr4a3;;chr4:154010882..154010889,-!p10@Prdm16!0.24!0.76!Prdm16;;chr5:137042338..137042372,-!p5@Cux1!0.24!0.76!Cux1;;chr6:52663997..52664043,+!p2@Tax1bp1!0.24!0.76!Tax1bp1;;chr6:144152590..144152602,-!p22@Sox5!0.24!0.76!Sox5;;chr6:6813769..6813781,+!p8@Dlx6!0.24!0.76!Dlx6;;chr6:144157960..144157967,-!p20@Sox5!0.24!0.76!Sox5;;chr6:52664439..52664461,+!p4@Tax1bp1!0.24!0.76!Tax1bp1;;chr6:144157968..144157989,-!p7@Sox5!0.24!0.76!Sox5;;chr5:77524199..77524210,-!p10@Hopx!0.24!0.76!Hopx;;chr6:144158267..144158282,-!p16@Sox5!0.24!0.76!Sox5;;chr6:14851403..14851422,+!p8@Foxp2!0.24!0.76!Foxp2;;chr6:6813269..6813272,+!p2@Dlx6!0.24!0.76!Dlx6;;chr6:29479308..29479325,+!p3@Irf5!0.24!0.76!Irf5;;chr6:144158183..144158210,-!p11@Sox5!0.24!0.76!Sox5;;chr6:144157893..144157905,-!p14@Sox5!0.24!0.76!Sox5;;chr5:24104540..24104584,-!p7@Smarcd3!0.24!0.76!Smarcd3;;chrX:83437105..83437121,+!p1@Nr0b1!0.24!0.76!Nr0b1;;chrX:58146612..58146615,-!p1@Sox3!0.24!0.76!Sox3;;chr10:42303410..42303422,-!p3@Nr2e1!0.24!0.76!Nr2e1;;chr10:102491405..102491416,-!p1@Alx1!0.24!0.76!Alx1;;chr12:109241971..109241982,-!p9@Bcl11b!0.24!0.76!Bcl11b;;chr11:98614697..98614707,+!p15@Thra!0.24!0.76!Thra;;chr10:42303434..42303445,-!p4@Nr2e1!0.24!0.76!Nr2e1;;chr11:98631631..98631667,-!p12@Nr1d1!0.24!0.76!Nr1d1;;chr12:100009260..100009274,+!p3@Zc3h14!0.24!0.76!Zc3h14;;chr10:5636354..5636373,-!p2@Esr1!0.24!0.76!Esr1;;chr10:80555398..80555409,-!p2@Creb3l3!0.24!0.76!Creb3l3;;chr11:97524329..97524348,+!p6@Mllt6!0.24!0.76!Mllt6;;chr11:90251960..90251972,-!p9@Hlf!0.24!0.76!Hlf;;chr10:30522660..30522671,-!p10@Ncoa7!0.24!0.76!Ncoa7;;chr11:21901587..21901604,-!p2@Otx1!0.24!0.76!Otx1;;chr11:23977800..23977810,+!p13@Bcl11a!0.24!0.76!Bcl11a;;chr10:84218931..84218942,+!p4@Rfx4!0.24!0.76!Rfx4;;chr11:102180656..102180663,-!p24@Ubtf!0.24!0.76!Ubtf;;chr14:70477013..70477029,+!p4@Egr3!0.24!0.76!Egr3;;chr14:18814327..18814334,+!p10@Thrb!0.24!0.76!Thrb;;chr12:50483778..50483789,+!p6@Foxg1!0.24!0.76!Foxg1;;chr13:78335687..78335701,-!p16@Nr2f1!0.24!0.76!Nr2f1;;chr12:75002422..75002429,+!p11@Hif1a!0.24!0.76!Hif1a;;chr15:25914088..25914091,+!p6@Zfp622!0.24!0.76!Zfp622;;chr14:52948033..52948045,-!p12@Sall2!0.24!0.76!Sall2;;chr14:18493470..18493477,+!p4@Thrb!0.24!0.76!Thrb;;chr12:12947199..12947213,-!p2@Mycn!0.24!0.76!Mycn;;chr12:30213392..30213414,+!p8@Myt1l!0.24!0.76!Myt1l;;chr14:118636183..118636192,-!p4@Sox21!0.24!0.76!Sox21;;chr12:50483663..50483678,+!p3@Foxg1!0.24!0.76!Foxg1;;chr14:122874593..122874610,+!p2@Zic2!0.24!0.76!Zic2;;chr1:169528520..169528542,+!p2@Rxrg!0.24!0.76!Rxrg;;chr1:57028538..57028553,-!p6@Satb2!0.24!0.76!Satb2;;chr2:35959541..35959548,-!p2@Lhx6!0.24!0.76!Lhx6;;chr2:144157144..144157150,-!p11@Ovol2!0.24!0.76!Ovol2;;chr2:61642695..61642702,+!p5@Tbr1!0.24!0.76!Tbr1;;chr2:38194778..38194798,+!p3@Lhx2!0.24!0.76!Lhx2;;chr2:168427120..168427138,-!p4@Nfatc2!0.24!0.76!Nfatc2;;chr1:57028182..57028191,-!p11@Satb2!0.24!0.76!Satb2;;chr2:181501745..181501778,+!p1@Myt1!0.24!0.76!Myt1;;chr1:189432857..189432870,+!p7@Esrrg!0.24!0.76!Esrrg;;chr2:151907546..151907561,+!p1@Scrt2!0.24!0.76!Scrt2;;chr2:105522885..105522902,+!p15@Pax6!0.24!0.76!Pax6;;chr1:189821700..189821713,+!p4@Esrrg!0.24!0.76!Esrrg;;chr1:179372543..179372557,+!p9@Zfp238!0.24!0.76!Zfp238;;chr1:189432881..189432903,+!p2@Esrrg!0.24!0.76!Esrrg;;chr2:180377307..180377330,-!p2@Tcfl5!0.24!0.76!Tcfl5;;chr1:19199236..19199258,+!p1@Tfap2b!0.24!0.76!Tfap2b;;chr19:59532915..59532940,+!p5@Emx2!0.24!0.76!Emx2;;chr2:147019977..147019985,-!p2@Nkx2-2!0.24!0.76!Nkx2-2;;chr2:105515586..105515606,+!p4@Pax6!0.24!0.76!Pax6;;chr1:6720216..6720232,+!p1@St18!0.24!0.76!St18;;chr19:59534008..59534046,+!p7@Emx2!0.24!0.76!Emx2;;chr8:74842792..74842814,+!p2@Klf2!0.24!0.76!Klf2;;chr9:91263173..91263220,+!p2@Zic4!0.24!0.76!Zic4;;chr9:31720903..31720918,-!p2@Barx2!0.24!0.76!Barx2;;chr9:91263879..91263911,+!p1@Zic4!0.24!0.76!Zic4;;chr9:96632690..96632703,-!p20@Zbtb38!0.24!0.76!Zbtb38;;chr9:8900459..8900489,+!p1@Pgr!0.24!0.76!Pgr;;chr9:91263649..91263666,+!p3@Zic4!0.24!0.76!Zic4;;chr9:119893782..119893802,-!p1@Csrnp1!0.24!0.76!Csrnp1;;chr7:30088957..30088966,+!p6@Dpf1!0.24!0.76!Dpf1;;chr8:12395843..12395852,+!p7@Sox1!0.24!0.76!Sox1;;chr9:31720817..31720829,-!p5@Barx2!0.24!0.76!Barx2;;chr8:12395629..12395644,+!p6@Sox1!0.24!0.76!Sox1;;chr8:12395670..12395682,+!p3@Sox1!0.24!0.76!Sox1;;chr7:38554745..38554756,-!p7@Zfp536!0.24!0.76!Zfp536;;chrX:110837933..110837958,+!p2@Dach2!0.24!0.76!Dach2;;chrX:108009798..108009815,+!p3@Pou3f4!0.24!0.76!Pou3f4;;chr13:58503480..58503510,-!p3@Hnrnpk!0.23!80.07!Hnrnpk;;chr3:90097085..90097175,+!p1@Gatad2b!0.23!61.19!Gatad2b;;chr12:41172341..41172385,-!p1@Zfp277!0.23!52.12!Zfp277;;chr17:34168732..34168766,+!p1@Rxrb!0.23!40.79!Rxrb;;chr3:19957802..19957857,+!p1@Hltf!0.23!26.44!Hltf;;chr15:50721588..50721610,-!p1@Trps1!0.23!15.11!Trps1;;chr2:181100122..181100143,+!p2@Zgpat!0.23!14.35!Zgpat;;chr15:75771454..75771521,+!p1@Zfp623!0.23!13.60!Zfp623;;chr8:112229478..112229536,+!p1@Zfp821!0.23!12.84!Zfp821;;chr9:57684520..57684612,-!p1@Arid3b!0.23!12.84!Arid3b;;chr7:24919167..24919203,+!p1@Zfp235!0.23!10.58!Zfp235;;chr7:50568603..50568655,-!p1@Zfp715!0.23!8.31!Zfp715;;chr12:119539843..119539899,-!p1@Sp4!0.23!7.55!Sp4;;chr2:128769721..128769770,-!p1@Zc3h8!0.23!5.29!Zc3h8;;chr7:4947697..4947718,-!p2@Zfp579!0.23!3.78!Zfp579;;chr4:6917971..6918000,-!p3@Tox!0.23!2.27!Tox;;chr18:69753108..69753139,+!p8@Tcf4!0.23!2.27!Tcf4;;chr17:27693746..27693759,+!p6@Hmga1-rs1,p7@Hmga1!0.23!2.27!Hmga1;;chr18:3337339..3337397,-!p5@Crem!0.23!2.27!Crem;;chr6:38204274..38204327,-!p3@D630045J12Rik!0.23!2.27!D630045J12Rik;;chr6:108610513..108610528,+!p3@Bhlhe40!0.23!1.51!Bhlhe40;;chr7:28516464..28516475,+!p3@Zfp60!0.23!1.51!Zfp60;;chr4:133801432..133801448,-!p3@Zfp593!0.23!1.51!Zfp593;;chr13:99124189..99124205,+!p1@Foxd1!0.23!1.51!Foxd1;;
+|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316,FF:0000294
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 40: / Line 45: @@
 |is_a=EFO:0002091;;FF:0011269
 |is_obsolete=
-|name=visual cortex - wildtype, neonate N30, donor2
+|library_id=CNhs13035
+|library_id_phase_based=2:CNhs13035
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;10239
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;10239
+|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/visual%2520cortex%2520-%2520wildtype%252c%2520neonate%2520N30%252c%2520donor2.CNhs13035.10239-104A5.mm10.nobarcode.bam
+|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/visual%2520cortex%2520-%2520wildtype%252c%2520neonate%2520N30%252c%2520donor2.CNhs13035.10239-104A5.mm10.nobarcode.ctss.bed.gz
+|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/visual%2520cortex%2520-%2520wildtype%252c%2520neonate%2520N30%252c%2520donor2.CNhs13035.10239-104A5.mm9.nobarcode.bam
+|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/visual%2520cortex%2520-%2520wildtype%252c%2520neonate%2520N30%252c%2520donor2.CNhs13035.10239-104A5.mm9.ctss.bed.gz
+|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/visual%2520cortex%2520-%2520wildtype%252c%2520neonate%2520N30%252c%2520donor2.CNhs13035.10239-104A5.mm9.nobarcode.rdna.fa.gz
+|name=visual cortex - wildtype
 |namespace=FANTOM5
 |part_of=
 |profile_cagescan=,,,
 |profile_hcage=CNhs13035,LSID999,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|repeat_enrich_byfamily=0.00439169576088696,0,0,0,0,0,0.35256598983742,0,0,0,0,-0.0843392403965415,0,0,0,0,0,0,0.0524812333199587,0,0,0,0,0,0,0,0,0,0,0,0,0.950542353544701,-0.558422792324031,0,0,0,0,0,-0.0871354333945594,0.0651281994657644,0.00394791388440252,0.882181219536773,-0.025494053807818,0,0,0,0,0,0,0,0,0,0,0,0,-0.0660055475634404,0,0,0,0,0,0,0.0288590436029832,0.244374584202533,0.514040340140897,0,-0.20244242069718,0.0891593514903143,0.905449262932074,-0.0185003911660262,0,0,0.0822100552120089,0.267133216643496,0,0,0.110277255510705,0.224073445917175,0.438317223312278,-0.0788315948399074,0.0270064156616068,0,0,0,0,0,0.308681000557866,0.0982137104990524,0.244237337909497,0,0,0.514040340140897,0.601903489292675,0
 |rna_box=104
 |rna_catalog_number=N/A
@@ Line 60: / Line 77: @@
 |rna_weight_ug=15.72
 |sample_age=P30
+|sample_category=tissues
 |sample_cell_catalog=N/A
 |sample_cell_line=N/A
@@ Line 75: / Line 93: @@
 |sample_note=
 |sample_sex=male
-|sample_species=mus musculus
+|sample_species=Mouse (Mus musculus)
 |sample_strain=
 |sample_tissue=Visual cortex
+|time= neonate N30
+|timecourse=Visual_cortex_development
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:10239-104A5;search_select_hide=table117:10239-104A5
 }}

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FF:10239-104A5: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 13:56, 3 June 2020

CNhs13035

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0