Personal tools

FF:10409-106B4: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005883
|DRA_sample_Accession=CAGE@SAMD00005883
|accession_numbers=CAGE;DRX007859;DRR008731;DRZ000156;DRZ001541
|accession_numbers=CAGE;DRX007859;DRR008731;DRZ000156;DRZ001541;DRZ011506;DRZ012891
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000255
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000255
Line 51: Line 51:
|library_id=CNhs10727
|library_id=CNhs10727
|library_id_phase_based=2:CNhs10727
|library_id_phase_based=2:CNhs10727
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10409
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10409
|name=chronic myelogenous leukemia cell line:KU812
|name=chronic myelogenous leukemia cell line:KU812
|namespace=FANTOM5
|namespace=FANTOM5
Line 58: Line 62:
|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.040444417589105,0.213715950840027,-0.27483329820609,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0892633398313195,0,0,0,0.0320298352585541,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.198080448368866,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,-0.0634742132090547,0.0640596705171081,0.0723321858505708,0,0,-0.0332839566959888,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.00218035568399105,0,0,0.0831835573039646,0,0,-0.00314380317913916,-0.0171902294533595,0.0320298352585541,0,0,-0.0584468268118252,-0.0665983229006405,0,0,0,0,0.11568059960232,-0.053814927254307,0,0,0,0,0,0,0.0640596705171081,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0.0640596705171081,0,0,-0.165674064961392,-0.474211345986206,0,0,0,0,0,0
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.040444417589105,0.213715950840027,-0.27483329820609,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0892633398313195,0,0,0,0.0320298352585541,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.198080448368866,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,-0.0634742132090547,0.0640596705171081,0.0723321858505708,0,0,-0.0332839566959888,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.00218035568399105,0,0,0.0831835573039646,0,0,-0.00314380317913916,-0.0171902294533595,0.0320298352585541,0,0,-0.0584468268118252,-0.0665983229006405,0,0,0,0,0.11568059960232,-0.053814927254307,0,0,0,0,0,0,0.0640596705171081,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0.0640596705171081,0,0,-0.165674064961392,-0.474211345986206,0,0,0,0,0,0
|repeat_enrich_byname=0,0,0,0.0640596705171081,0.11568059960232,0,0,0.0640596705171081,0,0,0.0640596705171081,0,0.324808240994978,0,0,0,-0.247178875285564,0,-0.474086218752008,0.110472581053662,0,0,-0.36734228066093,0,0,0,0,0.119873612497281,0,0.0640596705171081,0.0640596705171081,0,0.0412046801406112,0,0.0694610609079662,0,0,0,0,-0.00797473552486145,-0.305472230898407,0,-0.114321254900869,-0.00428459056026007,0,0,0,0,-0.0833100012971168,0,-0.120879483793741,-0.0827201683234173,0,-0.502558223072938,-0.0173888753297564,0,0,0.0320298352585541,-0.49125367475805,-0.662067580983209,0,0,-0.121779851751874,0.129172619028475,0,0,-0.391044581551635,0,-0.31468820735625,0.054870197973202,0,0.066838685553669,0,0,0,0,0,0,0,0,0,0,0,-0.0574934668214365,-0.00218035568399105,0.0324489768754673,0,0,0,-0.319610132856193,0,-0.0138323107379372,-0.373286155956567,-0.0559160256448342,-0.000387259879804425,0.0714596849791457,0,-0.302389727009913,-0.0620268856874665,-0.155019800376428,0.0887581510353455,-0.147401849371139,-0.189981719549847,0,-0.0171902294533595,0.180558830658034,0.0830310977769181,-0.262122292135109,0.00823431127823657,-1.16734883777,-0.132030789766384,0,0,0,-0.645270174740148,0,0.00175210074034182,-0.490114714476774,-0.176407720722808,-0.223465495753412,-0.241826257891208,-0.083249095325606,-0.263248313289333,-0.0395325284566706,0.0919328930823242,-0.052006620205141,-0.314714349483686,-0.036861504255459,0,-0.0830269132301321,-0.193060084149262,-0.572196156267296,0.372800189708145,0,0.102706414450496,-0.00428459056026007,0,-0.303472799013038,-0.121287987871782,0,0,-0.324789507294278,0,0,0,0,0,-0.0101262655647507,-0.539492143030166,-0.112981949058264,0,-0.095121340581125,0,-0.212623806805998,0,0.0757129269148646,-0.146009897457394,0,0.107950533962562,0,0.104063914611823,-0.0141126718562008,-0.0543797237449308,-0.253070258298562,-0.0584468268118252,0.292211855248472,0.22757759221292,-0.132599139638298,-0.788939864790226,-0.00815543486761472,-0.0881268324752877,0,-0.88354475051838,-0.615438461104416,-0.097079759486485,0.130971479868438,0,0.153546457167434,0,0.151243492991857,0.0240850189676639,0.108660232219953,-0.286446027896106,0.297124994079968,-0.0152478145915356,0,-0.121028307828314,-0.724071267256866,0,-0.214277896255126,-0.0164716176863073,0,-0.0863074128175312,0.444501431940379,-0.119683786357395,-0.138989456679195,0,-0.433768825979978,0,0,0.27010214925961,0.018511685812745,0,0.0872037723657855,-0.100658098791972,-0.0175321649338182,0.0533534736582418,0,0,-0.645700337992725,0,0,-0.541868393300922,-0.0636048451378017,-0.3657956003815,-0.253326341486756,-0.065755200379783,-0.108622809454255,0,0,-0.00820321887199976,0,0.20050726001881,0,0,-0.14302332117881,0,0,0,0,0,0,0,0,0,0,0,0,-0.206645640554592,0.00147800219323108,0,0.262680258878335,0,0,0,0,0,0.0640596705171081,0,0,-0.425943777851554,-0.058288587465245,-0.00314380317913916,0,0,0.0320298352585541,0,-0.0463988554602988,-0.0339120150015479,0,0.122125017079502,0,0,0,0,0.0831835573039646,0,0,0,0.0599368062486405,-0.057730457053664,-0.218889262818783,0,0,0,-0.27695440160179,0.119873612497281,0,0,0,0.00969620921010028,0,0,-0.123385357964956,0,-0.11844919626238,-0.0175222090297333,0.0320298352585541,-0.215792285556644,-0.293757084527888,-1.01878036493348,0,0,0.307080113621866,0,0,0.375576163993091,-0.0183105524485582,0.169324547093176,0,0,0,0,0,0.275951141826324,0,0.198878893489727,0,0,0,0,0,0.169324547093176,0,0,0,0,0,-0.345856175854677,0.0771004904346655,0,0,0,0,0,0,0,-0.0241060230789031,0.260908977756603,0,0,0,0,0,0,0,0,0.21112325742867,0,0,0,0,0,0.0723321858505708,0,0.169324547093176,0,0,-0.564807121153884,0,0,-0.213302461676406,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.00344547353816663,-0.59007525765806,0,0,0,0,0,0.213715950840027,0,-0.27483329820609,0,0,0,0,0.140103349868157,0,0,0,0.0645281623040195,0,-0.040444417589105,0,0,0,0,0,0.0640596705171081,0.219532256091579,0.0320298352585541,0,0,0,0,0,0,0,0,0,0,0.0320298352585541,0,0,0.117744537619518,0,-0.273101055144739,-0.0618746038594945,0,0,-0.018912401793015,0,0,0,0,0,0,0.0285963822201135,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.089507978864417,0,0,0.0640596705171081,0,0,0,0,0,0,0.0232943460616731,0,0,0,0,0.0640596705171081,0,0,-0.0979578962680575,0,0,0.16024515347698,0,0,0,0.0640596705171081,0,0,0.030651321563358,-0.191253758315953,-0.108017095920846,0,0,0.0640596705171081,-0.022355737223901,0,0,-0.0678917304938922,0.0640596705171081,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0.0599368062486405,0.0919666415071946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0640596705171081,-0.0892633398313195,0,0,0,0,0,0,0,0,0,0,0,0.0351720834349644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0640596705171081,0.084662273546588,0,0,0,0,0,0,0.334989460166814,0.119873612497281,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,0.111722011337934,0,0,0,0,0.0320298352585541,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.285555254453113,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0482220752390542,0,-0.020316961712919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18930017875712,0.198393847020643,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0842860611953292,0,0,-0.22606183721576,0,0,0,0,0,0.0117301687408685,0,0,0,0,0,0,0.00273949136698175,0,0,0,0,0,0,0,0,0,0,-0.0484300422256687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.175145191860854,-0.474211345986206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213715950840027,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.084662273546588,0,0,0,0,0,0,0,0,0,0,0,0,0,0.073897730194528,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0320298352585541,0,0,0,0,0.211656135335155,0.00233291288587832,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.667970185236182,0,0,0,0,0,0,0,0,0,0,0,0,0.169324547093176,0,0,0,0,0,0,0.0640596705171081,0,0,0,0,0,0,0.0320298352585541,0,0,0.00156332090231908,0,0,0,0,0,0,0,0,-0.620396418749604,0,0,0,0,0,0,0,0,0.637256324440135,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.192747187844922,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.084662273546588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0320298352585541,-0.072574140739919,0,0,0,0,0,0,0,-0.0586363264798928,0,0,0,0,0.27241384964606,0,0,0,0.736414368660654,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0919666415071946,0,0,0.0361970227310787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.000313249210170834,0,0,0.486597012917169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0640596705171081,0,0,0,0,0,0,0,0.24506624233,0,0,0,0,0,0,0,0.385682976245169,0,0,0,0,0.106857975420014,0,0,0,0,0,-0.0332839566959888,0,0,0,0,0,0.254272407710712,0,0,0,0,0,0,0,0,0,0.119873612497281,0,0,0,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0320298352585541,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.145419987857493,0,0,0,-0.0499379825215864,0,0,0,0,0,0,0,0,0,0,-0.0412500915278073,0,0,0,0,0.0640596705171081,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0483950759313276,0,0,0.0775861440201652,0,-0.146452841019099,0.0488676923476887,0,0,0,0,0,-0.0220203204819844,0,0,0,0,0,0,0,0,0,0.0640596705171081,0,0.0640596705171081,0,0.0743176329112605,0,0,0,0,0,0,0.169324547093176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35718422911717,0,0,0.697865549177692,0,0,-0.0463882781510128,0.051106181889372,0,-0.0477396614475454,0.191520248966601,0,0.744664705222692,0.526929468729745,0,0,0,0,0,0,0,0.0320298352585541,0,0,0,0,0,0.126993861788567,0,0,0.0640596705171081,0,0.00720072435450899,-0.205415965077461,0,0.189590991061329,0,0,0.165041502292611,0,0.145419987857493,0,0.073365139719589
|repeat_enrich_byname=0,0,0,0.0640596705171081,0.11568059960232,0,0,0.0640596705171081,0,0,0.0640596705171081,0,0.324808240994978,0,0,0,-0.247178875285564,0,-0.474086218752008,0.110472581053662,0,0,-0.36734228066093,0,0,0,0,0.119873612497281,0,0.0640596705171081,0.0640596705171081,0,0.0412046801406112,0,0.0694610609079662,0,0,0,0,-0.00797473552486145,-0.305472230898407,0,-0.114321254900869,-0.00428459056026007,0,0,0,0,-0.0833100012971168,0,-0.120879483793741,-0.0827201683234173,0,-0.502558223072938,-0.0173888753297564,0,0,0.0320298352585541,-0.49125367475805,-0.662067580983209,0,0,-0.121779851751874,0.129172619028475,0,0,-0.391044581551635,0,-0.31468820735625,0.054870197973202,0,0.066838685553669,0,0,0,0,0,0,0,0,0,0,0,-0.0574934668214365,-0.00218035568399105,0.0324489768754673,0,0,0,-0.319610132856193,0,-0.0138323107379372,-0.373286155956567,-0.0559160256448342,-0.000387259879804425,0.0714596849791457,0,-0.302389727009913,-0.0620268856874665,-0.155019800376428,0.0887581510353455,-0.147401849371139,-0.189981719549847,0,-0.0171902294533595,0.180558830658034,0.0830310977769181,-0.262122292135109,0.00823431127823657,-1.16734883777,-0.132030789766384,0,0,0,-0.645270174740148,0,0.00175210074034182,-0.490114714476774,-0.176407720722808,-0.223465495753412,-0.241826257891208,-0.083249095325606,-0.263248313289333,-0.0395325284566706,0.0919328930823242,-0.052006620205141,-0.314714349483686,-0.036861504255459,0,-0.0830269132301321,-0.193060084149262,-0.572196156267296,0.372800189708145,0,0.102706414450496,-0.00428459056026007,0,-0.303472799013038,-0.121287987871782,0,0,-0.324789507294278,0,0,0,0,0,-0.0101262655647507,-0.539492143030166,-0.112981949058264,0,-0.095121340581125,0,-0.212623806805998,0,0.0757129269148646,-0.146009897457394,0,0.107950533962562,0,0.104063914611823,-0.0141126718562008,-0.0543797237449308,-0.253070258298562,-0.0584468268118252,0.292211855248472,0.22757759221292,-0.132599139638298,-0.788939864790226,-0.00815543486761472,-0.0881268324752877,0,-0.88354475051838,-0.615438461104416,-0.097079759486485,0.130971479868438,0,0.153546457167434,0,0.151243492991857,0.0240850189676639,0.108660232219953,-0.286446027896106,0.297124994079968,-0.0152478145915356,0,-0.121028307828314,-0.724071267256866,0,-0.214277896255126,-0.0164716176863073,0,-0.0863074128175312,0.444501431940379,-0.119683786357395,-0.138989456679195,0,-0.433768825979978,0,0,0.27010214925961,0.018511685812745,0,0.0872037723657855,-0.100658098791972,-0.0175321649338182,0.0533534736582418,0,0,-0.645700337992725,0,0,-0.541868393300922,-0.0636048451378017,-0.3657956003815,-0.253326341486756,-0.065755200379783,-0.108622809454255,0,0,-0.00820321887199976,0,0.20050726001881,0,0,-0.14302332117881,0,0,0,0,0,0,0,0,0,0,0,0,-0.206645640554592,0.00147800219323108,0,0.262680258878335,0,0,0,0,0,0.0640596705171081,0,0,-0.425943777851554,-0.058288587465245,-0.00314380317913916,0,0,0.0320298352585541,0,-0.0463988554602988,-0.0339120150015479,0,0.122125017079502,0,0,0,0,0.0831835573039646,0,0,0,0.0599368062486405,-0.057730457053664,-0.218889262818783,0,0,0,-0.27695440160179,0.119873612497281,0,0,0,0.00969620921010028,0,0,-0.123385357964956,0,-0.11844919626238,-0.0175222090297333,0.0320298352585541,-0.215792285556644,-0.293757084527888,-1.01878036493348,0,0,0.307080113621866,0,0,0.375576163993091,-0.0183105524485582,0.169324547093176,0,0,0,0,0,0.275951141826324,0,0.198878893489727,0,0,0,0,0,0.169324547093176,0,0,0,0,0,-0.345856175854677,0.0771004904346655,0,0,0,0,0,0,0,-0.0241060230789031,0.260908977756603,0,0,0,0,0,0,0,0,0.21112325742867,0,0,0,0,0,0.0723321858505708,0,0.169324547093176,0,0,-0.564807121153884,0,0,-0.213302461676406,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.00344547353816663,-0.59007525765806,0,0,0,0,0,0.213715950840027,0,-0.27483329820609,0,0,0,0,0.140103349868157,0,0,0,0.0645281623040195,0,-0.040444417589105,0,0,0,0,0,0.0640596705171081,0.219532256091579,0.0320298352585541,0,0,0,0,0,0,0,0,0,0,0.0320298352585541,0,0,0.117744537619518,0,-0.273101055144739,-0.0618746038594945,0,0,-0.018912401793015,0,0,0,0,0,0,0.0285963822201135,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.089507978864417,0,0,0.0640596705171081,0,0,0,0,0,0,0.0232943460616731,0,0,0,0,0.0640596705171081,0,0,-0.0979578962680575,0,0,0.16024515347698,0,0,0,0.0640596705171081,0,0,0.030651321563358,-0.191253758315953,-0.108017095920846,0,0,0.0640596705171081,-0.022355737223901,0,0,-0.0678917304938922,0.0640596705171081,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0.0599368062486405,0.0919666415071946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0640596705171081,-0.0892633398313195,0,0,0,0,0,0,0,0,0,0,0,0.0351720834349644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0640596705171081,0.084662273546588,0,0,0,0,0,0,0.334989460166814,0.119873612497281,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,0.111722011337934,0,0,0,0,0.0320298352585541,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.285555254453113,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0482220752390542,0,-0.020316961712919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18930017875712,0.198393847020643,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0842860611953292,0,0,-0.22606183721576,0,0,0,0,0,0.0117301687408685,0,0,0,0,0,0,0.00273949136698175,0,0,0,0,0,0,0,0,0,0,-0.0484300422256687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.175145191860854,-0.474211345986206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213715950840027,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.084662273546588,0,0,0,0,0,0,0,0,0,0,0,0,0,0.073897730194528,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0320298352585541,0,0,0,0,0.211656135335155,0.00233291288587832,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.667970185236182,0,0,0,0,0,0,0,0,0,0,0,0,0.169324547093176,0,0,0,0,0,0,0.0640596705171081,0,0,0,0,0,0,0.0320298352585541,0,0,0.00156332090231908,0,0,0,0,0,0,0,0,-0.620396418749604,0,0,0,0,0,0,0,0,0.637256324440135,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.192747187844922,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.084662273546588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0320298352585541,-0.072574140739919,0,0,0,0,0,0,0,-0.0586363264798928,0,0,0,0,0.27241384964606,0,0,0,0.736414368660654,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0919666415071946,0,0,0.0361970227310787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.000313249210170834,0,0,0.486597012917169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0640596705171081,0,0,0,0,0,0,0,0.24506624233,0,0,0,0,0,0,0,0.385682976245169,0,0,0,0,0.106857975420014,0,0,0,0,0,-0.0332839566959888,0,0,0,0,0,0.254272407710712,0,0,0,0,0,0,0,0,0,0.119873612497281,0,0,0,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0320298352585541,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.145419987857493,0,0,0,-0.0499379825215864,0,0,0,0,0,0,0,0,0,0,-0.0412500915278073,0,0,0,0,0.0640596705171081,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0483950759313276,0,0,0.0775861440201652,0,-0.146452841019099,0.0488676923476887,0,0,0,0,0,-0.0220203204819844,0,0,0,0,0,0,0,0,0,0.0640596705171081,0,0.0640596705171081,0,0.0743176329112605,0,0,0,0,0,0,0.169324547093176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35718422911717,0,0,0.697865549177692,0,0,-0.0463882781510128,0.051106181889372,0,-0.0477396614475454,0.191520248966601,0,0.744664705222692,0.526929468729745,0,0,0,0,0,0,0,0.0320298352585541,0,0,0,0,0,0.126993861788567,0,0,0.0640596705171081,0,0.00720072435450899,-0.205415965077461,0,0.189590991061329,0,0,0.165041502292611,0,0.145419987857493,0,0.073365139719589
Line 96: Line 100:
|top_motifs=GATA6:4.74112467725;NFIX:2.92022482079;ZNF148:2.74797890579;MYB:2.25055392093;POU2F1..3:2.07320105229;STAT1,3:2.02602105264;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.72651463777;ALX1:1.6633399753;E2F1..5:1.47509002129;NFY{A,B,C}:1.42114142995;FOX{I1,J2}:1.34608864985;STAT5{A,B}:1.3246922467;ELF1,2,4:1.2496375995;IKZF2:1.21927887603;YY1:1.15232753132;ZNF143:1.13786789572;NANOG{mouse}:1.0659820752;bHLH_family:1.04363783218;ELK1,4_GABP{A,B1}:0.893377840915;RBPJ:0.843120033436;EN1,2:0.809035982717;TLX2:0.786052741878;NRF1:0.769423381252;PAX8:0.764786712849;PBX1:0.74392680343;ZBTB16:0.740770775377;DMAP1_NCOR{1,2}_SMARC:0.702438344642;BREu{core}:0.683244789744;SOX{8,9,10}:0.658825872669;HBP1_HMGB_SSRP1_UBTF:0.62655787729;CRX:0.624542783997;NR5A1,2:0.618306938936;SPIB:0.612740318557;NKX2-1,4:0.611186339423;CUX2:0.587795929635;PAX6:0.582817622914;PITX1..3:0.544050669354;RUNX1..3:0.493047103966;AR:0.478284350873;AHR_ARNT_ARNT2:0.474743369368;PRRX1,2:0.459623997762;VSX1,2:0.458641068909;ETS1,2:0.449942733729;PAX3,7:0.438523000677;OCT4_SOX2{dimer}:0.411862042431;SPI1:0.411030746137;POU6F1:0.400134576925;HOXA9_MEIS1:0.385728719299;HSF1,2:0.36497933796;POU3F1..4:0.357792881878;FOXP1:0.353534376037;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.320160760472;EVI1:0.312194390005;TOPORS:0.29465692937;NR1H4:0.280028621673;AIRE:0.274954349781;HIF1A:0.242276079412;HOX{A5,B5}:0.236619033039;SMAD1..7,9:0.224024968821;RORA:0.204891854607;FOXN1:0.189059220122;PDX1:0.110547840075;GZF1:0.105299433836;SOX17:0.10294591118;NR6A1:0.0835026610817;POU5F1:0.0771209841053;HAND1,2:0.0745662888784;NKX2-3_NKX2-5:0.0655364903174;ATF5_CREB3:0.0166943144396;POU1F1:0.00128924104282;NANOG:0.00127951219917;FOXP3:0.00116509215603;CDX1,2,4:-0.0192388527416;SNAI1..3:-0.0552642186506;HOX{A4,D4}:-0.0628936913822;HOX{A6,A7,B6,B7}:-0.0705327511092;MYOD1:-0.0783718946412;PPARG:-0.111571783485;TEF:-0.11738078011;PAX4:-0.127304430033;LEF1_TCF7_TCF7L1,2:-0.127828073268;MTF1:-0.149303923967;NFE2:-0.150955082251;FOXQ1:-0.163321531188;SOX2:-0.177914201148;T:-0.184391611713;PAX2:-0.186077270501;NHLH1,2:-0.189442854513;TBP:-0.192030730501;ONECUT1,2:-0.208365871706;NKX6-1,2:-0.214461878426;DBP:-0.218668118019;NKX3-1:-0.233635246;ATF4:-0.24335218777;ARID5B:-0.247547758053;RXRA_VDR{dimer}:-0.254947301037;NFKB1_REL_RELA:-0.257581896483;HNF4A_NR2F1,2:-0.27080389272;TFDP1:-0.279361024264;SREBF1,2:-0.30287950164;FOXA2:-0.30824252533;ZNF238:-0.326081578118;RFX2..5_RFXANK_RFXAP:-0.335496128872;ZFP161:-0.33659075904;ZEB1:-0.342983496379;HES1:-0.345326495055;HNF1A:-0.346114571941;GFI1:-0.348240202834;TGIF1:-0.385120075138;STAT2,4,6:-0.458141958431;IRF1,2:-0.465559633894;HMGA1,2:-0.490608164936;RXR{A,B,G}:-0.503087297731;REST:-0.51046399219;XBP1:-0.511936625082;CREB1:-0.515735447723;SRF:-0.519829003355;GCM1,2:-0.523078026642;BACH2:-0.524427099456;ZNF423:-0.533965462569;LHX3,4:-0.55051669704;FOSL2:-0.576310133411;BPTF:-0.576341304578;ESRRA:-0.579586833628;MEF2{A,B,C,D}:-0.582063066607;MYBL2:-0.597078864297;FOXM1:-0.614027394166;IRF7:-0.616014975145;MED-1{core}:-0.630011908942;RFX1:-0.632501267818;RREB1:-0.636610399375;FOS_FOS{B,L1}_JUN{B,D}:-0.638488010236;TLX1..3_NFIC{dimer}:-0.669230924213;NFE2L2:-0.672024208091;ADNP_IRX_SIX_ZHX:-0.681957017067;FOX{D1,D2}:-0.689426388369;PRDM1:-0.694030173535;GTF2I:-0.701117840349;SOX5:-0.707338751221;TFAP4:-0.713505291145;FOX{F1,F2,J1}:-0.715828196569;MYFfamily:-0.74789445575;GATA4:-0.76496537213;IKZF1:-0.787216243595;HMX1:-0.787700096584;EP300:-0.806589056149;PAX5:-0.80732453287;SPZ1:-0.808033290839;NKX3-2:-0.81043311781;ZNF384:-0.813993115957;XCPE1{core}:-0.814843745727;ATF2:-0.837520893218;KLF4:-0.846585995074;FOXO1,3,4:-0.856452461131;NFE2L1:-0.868179427056;NFATC1..3:-0.868571090715;CDC5L:-0.868704196781;ZBTB6:-0.873523381432;GLI1..3:-0.874202983133;GTF2A1,2:-0.904493541544;CEBPA,B_DDIT3:-0.914566650054;HIC1:-0.916951991669;HLF:-0.93319887161;PATZ1:-0.94421996434;MZF1:-0.952735346727;FOXD3:-0.956803448559;TEAD1:-0.990102911559;UFEwm:-0.996145863117;NKX2-2,8:-1.00184347825;NFIL3:-1.01004458833;MAFB:-1.05035856051;LMO2:-1.09412287152;ZIC1..3:-1.09810508385;TFAP2{A,C}:-1.11180762399;EGR1..3:-1.13093047416;MTE{core}:-1.14992211104;TP53:-1.15557683208;TAL1_TCF{3,4,12}:-1.20985647955;TBX4,5:-1.22274531104;MAZ:-1.25995877245;SP1:-1.27324770825;GFI1B:-1.28517974055;TFAP2B:-1.28718339442;EBF1:-1.29115521066;ESR1:-1.32105826446;PAX1,9:-1.332856947;NR3C1:-1.39454477752;FOXL1:-1.40153829031;ALX4:-1.47097220825;JUN:-1.49627724228;ATF6:-1.64947588191;TFCP2:-1.94508327408
|top_motifs=GATA6:4.74112467725;NFIX:2.92022482079;ZNF148:2.74797890579;MYB:2.25055392093;POU2F1..3:2.07320105229;STAT1,3:2.02602105264;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.72651463777;ALX1:1.6633399753;E2F1..5:1.47509002129;NFY{A,B,C}:1.42114142995;FOX{I1,J2}:1.34608864985;STAT5{A,B}:1.3246922467;ELF1,2,4:1.2496375995;IKZF2:1.21927887603;YY1:1.15232753132;ZNF143:1.13786789572;NANOG{mouse}:1.0659820752;bHLH_family:1.04363783218;ELK1,4_GABP{A,B1}:0.893377840915;RBPJ:0.843120033436;EN1,2:0.809035982717;TLX2:0.786052741878;NRF1:0.769423381252;PAX8:0.764786712849;PBX1:0.74392680343;ZBTB16:0.740770775377;DMAP1_NCOR{1,2}_SMARC:0.702438344642;BREu{core}:0.683244789744;SOX{8,9,10}:0.658825872669;HBP1_HMGB_SSRP1_UBTF:0.62655787729;CRX:0.624542783997;NR5A1,2:0.618306938936;SPIB:0.612740318557;NKX2-1,4:0.611186339423;CUX2:0.587795929635;PAX6:0.582817622914;PITX1..3:0.544050669354;RUNX1..3:0.493047103966;AR:0.478284350873;AHR_ARNT_ARNT2:0.474743369368;PRRX1,2:0.459623997762;VSX1,2:0.458641068909;ETS1,2:0.449942733729;PAX3,7:0.438523000677;OCT4_SOX2{dimer}:0.411862042431;SPI1:0.411030746137;POU6F1:0.400134576925;HOXA9_MEIS1:0.385728719299;HSF1,2:0.36497933796;POU3F1..4:0.357792881878;FOXP1:0.353534376037;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.320160760472;EVI1:0.312194390005;TOPORS:0.29465692937;NR1H4:0.280028621673;AIRE:0.274954349781;HIF1A:0.242276079412;HOX{A5,B5}:0.236619033039;SMAD1..7,9:0.224024968821;RORA:0.204891854607;FOXN1:0.189059220122;PDX1:0.110547840075;GZF1:0.105299433836;SOX17:0.10294591118;NR6A1:0.0835026610817;POU5F1:0.0771209841053;HAND1,2:0.0745662888784;NKX2-3_NKX2-5:0.0655364903174;ATF5_CREB3:0.0166943144396;POU1F1:0.00128924104282;NANOG:0.00127951219917;FOXP3:0.00116509215603;CDX1,2,4:-0.0192388527416;SNAI1..3:-0.0552642186506;HOX{A4,D4}:-0.0628936913822;HOX{A6,A7,B6,B7}:-0.0705327511092;MYOD1:-0.0783718946412;PPARG:-0.111571783485;TEF:-0.11738078011;PAX4:-0.127304430033;LEF1_TCF7_TCF7L1,2:-0.127828073268;MTF1:-0.149303923967;NFE2:-0.150955082251;FOXQ1:-0.163321531188;SOX2:-0.177914201148;T:-0.184391611713;PAX2:-0.186077270501;NHLH1,2:-0.189442854513;TBP:-0.192030730501;ONECUT1,2:-0.208365871706;NKX6-1,2:-0.214461878426;DBP:-0.218668118019;NKX3-1:-0.233635246;ATF4:-0.24335218777;ARID5B:-0.247547758053;RXRA_VDR{dimer}:-0.254947301037;NFKB1_REL_RELA:-0.257581896483;HNF4A_NR2F1,2:-0.27080389272;TFDP1:-0.279361024264;SREBF1,2:-0.30287950164;FOXA2:-0.30824252533;ZNF238:-0.326081578118;RFX2..5_RFXANK_RFXAP:-0.335496128872;ZFP161:-0.33659075904;ZEB1:-0.342983496379;HES1:-0.345326495055;HNF1A:-0.346114571941;GFI1:-0.348240202834;TGIF1:-0.385120075138;STAT2,4,6:-0.458141958431;IRF1,2:-0.465559633894;HMGA1,2:-0.490608164936;RXR{A,B,G}:-0.503087297731;REST:-0.51046399219;XBP1:-0.511936625082;CREB1:-0.515735447723;SRF:-0.519829003355;GCM1,2:-0.523078026642;BACH2:-0.524427099456;ZNF423:-0.533965462569;LHX3,4:-0.55051669704;FOSL2:-0.576310133411;BPTF:-0.576341304578;ESRRA:-0.579586833628;MEF2{A,B,C,D}:-0.582063066607;MYBL2:-0.597078864297;FOXM1:-0.614027394166;IRF7:-0.616014975145;MED-1{core}:-0.630011908942;RFX1:-0.632501267818;RREB1:-0.636610399375;FOS_FOS{B,L1}_JUN{B,D}:-0.638488010236;TLX1..3_NFIC{dimer}:-0.669230924213;NFE2L2:-0.672024208091;ADNP_IRX_SIX_ZHX:-0.681957017067;FOX{D1,D2}:-0.689426388369;PRDM1:-0.694030173535;GTF2I:-0.701117840349;SOX5:-0.707338751221;TFAP4:-0.713505291145;FOX{F1,F2,J1}:-0.715828196569;MYFfamily:-0.74789445575;GATA4:-0.76496537213;IKZF1:-0.787216243595;HMX1:-0.787700096584;EP300:-0.806589056149;PAX5:-0.80732453287;SPZ1:-0.808033290839;NKX3-2:-0.81043311781;ZNF384:-0.813993115957;XCPE1{core}:-0.814843745727;ATF2:-0.837520893218;KLF4:-0.846585995074;FOXO1,3,4:-0.856452461131;NFE2L1:-0.868179427056;NFATC1..3:-0.868571090715;CDC5L:-0.868704196781;ZBTB6:-0.873523381432;GLI1..3:-0.874202983133;GTF2A1,2:-0.904493541544;CEBPA,B_DDIT3:-0.914566650054;HIC1:-0.916951991669;HLF:-0.93319887161;PATZ1:-0.94421996434;MZF1:-0.952735346727;FOXD3:-0.956803448559;TEAD1:-0.990102911559;UFEwm:-0.996145863117;NKX2-2,8:-1.00184347825;NFIL3:-1.01004458833;MAFB:-1.05035856051;LMO2:-1.09412287152;ZIC1..3:-1.09810508385;TFAP2{A,C}:-1.11180762399;EGR1..3:-1.13093047416;MTE{core}:-1.14992211104;TP53:-1.15557683208;TAL1_TCF{3,4,12}:-1.20985647955;TBX4,5:-1.22274531104;MAZ:-1.25995877245;SP1:-1.27324770825;GFI1B:-1.28517974055;TFAP2B:-1.28718339442;EBF1:-1.29115521066;ESR1:-1.32105826446;PAX1,9:-1.332856947;NR3C1:-1.39454477752;FOXL1:-1.40153829031;ALX4:-1.47097220825;JUN:-1.49627724228;ATF6:-1.64947588191;TFCP2:-1.94508327408
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10409-106B4;search_select_hide=table117:FF:10409-106B4
}}
}}

Latest revision as of 13:59, 3 June 2020

Name:chronic myelogenous leukemia cell line:KU812
Species:Human (Homo sapiens)
Library ID:CNhs10727
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stageNA
sexmale
ageunknown
cell typebasophil progenitor cell
cell lineKU812
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005883
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10727 CAGE DRX007859 DRR008731
Accession ID Hg19

Library idBAMCTSS
CNhs10727 DRZ000156 DRZ001541
Accession ID Hg38

Library idBAMCTSS
CNhs10727 DRZ011506 DRZ012891
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0485
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.616
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0.0641
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0.12
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.131
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0401
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.214
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD341.026
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.294
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0.0641
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.572
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.254
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.429
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0.0641
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.182
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0.145
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10727

Jaspar motifP-value
MA0002.20.377
MA0003.10.784
MA0004.10.12
MA0006.10.165
MA0007.10.608
MA0009.10.509
MA0014.10.594
MA0017.10.361
MA0018.20.0234
MA0019.10.534
MA0024.13.48453e-6
MA0025.10.442
MA0027.10.3
MA0028.11.50806e-7
MA0029.13.31368e-5
MA0030.10.361
MA0031.10.0481
MA0035.26.88529e-24
MA0038.10.8
MA0039.20.415
MA0040.10.0682
MA0041.10.286
MA0042.10.792
MA0043.10.107
MA0046.10.8
MA0047.20.647
MA0048.10.265
MA0050.10.694
MA0051.10.56
MA0052.10.00502
MA0055.10.0103
MA0057.10.744
MA0058.10.156
MA0059.10.00641
MA0060.14.94666e-17
MA0061.10.803
MA0062.29.24967e-13
MA0065.20.124
MA0066.10.812
MA0067.10.897
MA0068.10.141
MA0069.10.523
MA0070.10.247
MA0071.10.625
MA0072.10.00621
MA0073.10.692
MA0074.10.528
MA0076.14.2937e-9
MA0077.10.414
MA0078.10.601
MA0079.20.633
MA0080.23.2434e-7
MA0081.10.0109
MA0083.10.468
MA0084.10.528
MA0087.10.0889
MA0088.17.84851e-4
MA0090.10.0118
MA0091.10.84
MA0092.10.544
MA0093.10.118
MA0099.20.00139
MA0100.14.10559e-4
MA0101.10.487
MA0102.20.209
MA0103.10.749
MA0104.29.02252e-6
MA0105.10.0303
MA0106.10.918
MA0107.10.0498
MA0108.20.359
MA0111.10.415
MA0112.20.69
MA0113.10.387
MA0114.10.204
MA0115.10.383
MA0116.10.00285
MA0117.10.784
MA0119.10.287
MA0122.10.757
MA0124.10.659
MA0125.10.931
MA0131.10.27
MA0135.10.934
MA0136.11.69741e-6
MA0137.20.0345
MA0138.20.643
MA0139.10.459
MA0140.11.44004e-42
MA0141.10.796
MA0142.10.757
MA0143.10.651
MA0144.10.487
MA0145.10.508
MA0146.10.329
MA0147.11.02022e-6
MA0148.10.582
MA0149.10.118
MA0150.10.639
MA0152.10.495
MA0153.10.234
MA0154.10.271
MA0155.10.616
MA0156.13.4264e-9
MA0157.10.0028
MA0159.10.674
MA0160.10.445
MA0162.10.964
MA0163.15.42934e-10
MA0164.10.978
MA0258.10.677
MA0259.10.00512



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10727

Novel motifP-value
10.165
100.0148
1000.704
1010.236
1020.528
1030.721
1040.559
1050.492
1060.217
1070.502
1080.374
1090.0433
110.155
1100.157
1110.0557
1120.0705
1130.694
1140.49
1150.0834
1160.974
1170.0672
1180.961
1190.307
120.933
1200.676
1210.566
1220.911
1230.655
1240.0181
1250.567
1260.32
1270.494
1280.25
1290.865
130.00505
1300.00929
1310.423
1320.407
1330.18
1340.841
1350.514
1360.0478
1370.694
1380.626
1390.537
140.298
1400.828
1410.308
1420.458
1430.208
1440.609
1450.537
1460.358
1470.101
1480.848
1490.141
150.484
1500.978
1510.524
1520.0466
1530.847
1540.989
1550.0894
1560.64
1570.741
1580.88
1590.364
160.312
1600.343
1610.403
1620.907
1630.238
1640.12
1650.797
1660.336
1670.433
1680.779
1690.674
170.741
180.269
190.801
20.225
200.164
210.927
220.845
230.0146
240.554
250.185
260.504
270.499
280.492
290.0438
30.303
300.0201
310.175
320.0119
330.116
340.607
350.632
360.0225
370.479
380.863
390.489
40.0214
400.182
410.899
420.373
430.481
440.575
450.74
460.553
470.0966
480.191
490.084
50.57
500.998
510.638
520.265
530.164
540.586
550.351
560.98
570.487
580.169
590.878
60.959
600.753
610.342
620.29
630.981
640.427
650.328
662.6691e-9
670.802
680.257
690.866
70.0267
700.383
710.0707
720.865
730.453
740.542
750.0456
760.235
770.187
780.0323
790.0851
80.89
800.435
810.943
820.819
830.401
840.893
850.183
860.987
870.199
880.503
890.391
90.873
900.304
910.12
920.261
930.89
940.568
950.0322
960.941
970.341
980.322
990.471



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10727


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
1240 (leukemia)
1036 (chronic leukemia)
8692 (myeloid leukemia)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100737 (leukemia cell line sample)
0102580 (chronic myeloid leukemia cell line sample)
0101035 (hematopoietic cell line sample)
0100740 (myeloid leukemia cell line sample)
0100732 (KU-812 cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=FF:10409-106B4&oldid=4576014"