FF:10470-106I2: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005108 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX007888;DRR008760;DRZ000185;DRZ001570;DRZ011535;DRZ012920 | ||
|ancestors_in_disease_facet=DOID: | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002110,UBERON:0002100,UBERON:0001007,UBERON:0004119,UBERON:0000466,UBERON:0002075,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002323,UBERON:0005177,UBERON:0005172,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0002294,UBERON:0001173,UBERON:0000916,UBERON:0002423 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:1000415 | |||
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:305 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
| | |||
|fonse_cell_line=FF:0101120 | |fonse_cell_line=FF:0101120 | ||
|fonse_cell_line_closure=FF:0101120 | |fonse_cell_line_closure=FF:0101120 | ||
| Line 35: | Line 40: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/gall%2520bladder%2520carcinoma%2520cell%2520line%253aTGBC14TKB.CNhs11256.10470-106I2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/gall%2520bladder%2520carcinoma%2520cell%2520line%253aTGBC14TKB.CNhs11256.10470-106I2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/gall%2520bladder%2520carcinoma%2520cell%2520line%253aTGBC14TKB.CNhs11256.10470-106I2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/gall%2520bladder%2520carcinoma%2520cell%2520line%253aTGBC14TKB.CNhs11256.10470-106I2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/gall%2520bladder%2520carcinoma%2520cell%2520line%253aTGBC14TKB.CNhs11256.10470-106I2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10470-106I2 | |id=FF:10470-106I2 | ||
|is_a=CL:1000415;;EFO:0002091;;FF: | |is_a=CL:1000415;;EFO:0002091;;FF:0000210;;FF:0100297 | ||
|is_obsolete= | |||
|library_id=CNhs11256 | |||
|library_id_phase_based=2:CNhs11256 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10470 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10470 | |||
|name=gall bladder carcinoma cell line:TGBC14TKB | |name=gall bladder carcinoma cell line:TGBC14TKB | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 59: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11256,LSID757,release008,COMPLETED | |profile_hcage=CNhs11256,LSID757,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0.0775682460801064,0.0716796069902135,0,0,0,0,-0.0169588161059591,0.200482271496296,-0.199793886113408,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0.0775682460801064,0,0,-0.153323010348428,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.0456585812178647,0,0,0,0,0,0,0,0,0.0862487089174324,0,0,0,0,0,0.0132016571999519,0,-0.0194241151624987,0,0,0.198829284144317,0,0,0,0,0,0,0,0,0.0775682460801064,0,0,0,0,0.0775682460801064,0,0,0,0,0.0387841230400532,0,0.0775682460801064,0,0,0.0140297408664831,0.0406430587028616,0,0,0,-0.186900929024139,0.124360230818756,0.0387841230400532,0,0.139025258788201,0,0.10244692025859,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201003326814199,0,0,0,-0.0444302396324532,-0.0601905364512253,0.0775682460801064,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,0.10244692025859,0,0,0.0775682460801064,0.200482271496296,0,0,0,0.0775682460801064,0,0,0,-0.103819661305138,0.0387841230400532,-0.0331830461825178,0.152657768833942,0,0,-0.164976106912563,0,0.143359213980427,0,0.063062719534696,0.470632995532953,0,0.3745393357846,0.3745393357846,0,-0.128119866952565,0,0.092946662391112,0,0,0,0,0.145637735523129,0.135430941671083,0,0.210754772176103,0.867490563260524,0,0,0,0,0.034494287210982,0,-0.0433112377136343,-0.0827201683234173,0,-0.418543080250019,0.0218557492989244,0,0,0,-0.349379008233431,0.646003248271971,0.0387841230400532,0,-0.0442116056717673,-0.0127889496175958,0,0,-0.391044581551635,0,-0.265448885662364,0.184421894853309,0,0.189324207818304,0,0,0,0,0,0.143359213980427,0,0,0,0.0716796069902135,0,0.06798542674549,0.113914575890522,0.0800537491926882,0.250957787133853,0.470632995532953,0.0108265019393439,-0.00331567286302659,0.029585270660035,0,0.334843902162113,-0.0691497049885644,0.063457540371031,0.0016814641083136,0,-0.302389727009913,-0.0896927710036945,-0.259206434168954,-0.186900929024139,-0.147401849371139,-0.189981719549847,0.0301212022576151,-0.328890471331173,0.139604015641102,0.20265957749359,0.284709222697328,0.0960753285088235,-0.407218212188341,0.250610111243785,0,0.594753841473321,0,0.396015865675132,0,0.00963390536457687,-0.346755500496347,0.0765430226801422,-0.159418425317474,0.012985353221045,0.347398603887954,-0.238862018926792,0.248480289995533,-0.206478665762742,0,-0.186255827137223,0,0.200482271496296,0.0355257766959438,-0.0553059963831233,0.269627651071583,0,0,0.0406284981830349,0.340643380516948,0.0387841230400532,-0.124452684275954,0.142415719046313,0.0775682460801064,0.121058638420192,-0.137874058301921,0.0775682460801064,0,0.105207211584148,0.0781026693127602,0.0775682460801064,0.216400331943535,0.0964310549251965,-0.0894963475751178,0,-0.0455225876889795,0.101034824323334,0.0106270062367531,0,0.0613032607982785,-0.0684416513772878,-0.0325673707513974,-0.0416760174623831,0,-0.231169666614918,0.152271555181806,-0.0216314823585758,-0.221912533895441,0.632725552900736,0.269326663489879,-0.0172082720377644,-0.293171138108096,-0.414400529005626,0.0613684048938694,-0.0881268324752877,0.104923389645257,-0.632586963384527,0.607896647874647,0.0167239296809205,-0.130485401715529,0.0775682460801064,-0.0236890120457789,0,0.161351544923428,0,-0.224834912772639,0.075392421705439,-0.188331587446833,0.0228121783190485,0,-0.12013927192213,0.0360593583247892,0.143359213980427,0.136603268422336,0,0.770025666651224,0.0501151881616571,0.139042081541804,-0.0111681563682928,0.2506517492887,0.0775682460801064,-0.45295882050353,0,0,0.316986304037761,0.438049526082782,0.0775682460801064,0.150607556252782,0.251592762088685,0.341353735041075,0.18020183792248,0.143359213980427,0,0.891353806674551,0,0.797951852219577,0.10220199430065,0,1.26266881996856,-0.109967127506329,0.00650371962607175,0.160178995236956,0,0,0.23145987562914,0.143359213980427,-0.232384802532319,0,0,-0.211097173558771,-0.0390598669100264,0,0,0,0.0997713096094485,0,0,0,0,0.0162322854356272,0,0,0.382334079308466,0.115799665316505,0,-0.0647942018526426,0,0.0775682460801064,0,0,0.337121337886127,0,0.0377132685279863,0,0.159998792401064,-0.017469832517171,0.127940371457433,0.0387841230400532,0.0775682460801064,0.0387841230400532,0,-0.0152411310571783,-0.00275429059842736,0.0775682460801064,-0.0542944604175253,0.0775682460801064,0.148086455678707,0,0,0.322846651805105,0,0,0,0,0.142751814442632,-0.0275150989103577,0,0,0,-0.27695440160179,0,0,0,0,-0.458179441492757,0,0.0281977833607893,0,0,0.0173658495714124,0.389051115986111,0,-0.0865768082636452,-0.331625084340119,0.795963905042112,0,0,0.0348257795675266,0,0,0.0689892471569189,0,0,-0.0209247759461169,0,0,0,0,0.3745393357846,0.0775682460801064,-0.0138322409034592,0.139025258788201,0,0,0,0,0,0,0,0,0,0,0.0040892644996362,0.108258214837786,0,0,0,0,0,0,0,0.280628933466403,0.235409126679614,0,0,0.0400166330510087,0,0,0.0775682460801064,0,0,0.365312108391144,0,0,0,0,0,-0.0194241151624987,0,0,0,0.143359213980427,-0.564807121153884,0,0,-0.199793886113408,0,0,0,0,0,0,0,0,0,0.0775682460801064,0,0,0,0.0771631854608487,-0.20644434718751,0,0,0,0,0,0.200482271496296,0,0.0622880396800362,0,0,0,0,-0.0363161276288708,0,0,0,0.365836610743796,0,-0.0169588161059591,0,0,0,0.125478893566927,0,0.10452286412271,0.168560668943064,0.0387841230400532,0,0,0,0,0,0.250957787133853,0,0,0,0.0387841230400532,0,0,0,0.0356564285004555,0.0140085442598309,0.111657391185356,0.0207092999175072,0,0,0.185740671394152,0,0,0,0,0,0,0.137220244914536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.086718528193792,0,0,0,0,0,0,0,-0.0979578962680575,0,0,-0.0203532028103126,0,0,0,0,0,0,0.0131102623803516,0.0030829450970325,0.0174866065152022,0,0,0.0775682460801064,-0.054385572482455,0,0,0,0,-0.0667773874189013,0,0,0,0,0,0,0,1.44980192172121,0.250957787133853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0,0,0,0,0,0,0,0.100241135748148,0,0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| |||
|rna_box=106 | |rna_box=106 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 77: | ||
|rna_weight_ug=59.78775 | |rna_weight_ug=59.78775 | ||
|sample_age=unknown | |sample_age=unknown | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB1186 | |sample_cell_catalog=RCB1186 | ||
|sample_cell_line=TGBC14TKB | |sample_cell_line=TGBC14TKB | ||
| Line 69: | Line 90: | ||
|sample_ethnicity=J | |sample_ethnicity=J | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.77784268578694e-296!GO:0043226;organelle;2.90680798291055e-244!GO:0043229;intracellular organelle;9.15753002137992e-244!GO:0043231;intracellular membrane-bound organelle;1.96706401814195e-240!GO:0043227;membrane-bound organelle;3.53128752327524e-240!GO:0005737;cytoplasm;1.92982715191735e-177!GO:0044422;organelle part;1.19064657067328e-152!GO:0044446;intracellular organelle part;2.67687043085119e-151!GO:0005634;nucleus;1.7102688278382e-127!GO:0044444;cytoplasmic part;3.97588616781966e-111!GO:0044237;cellular metabolic process;3.52841268399434e-102!GO:0044238;primary metabolic process;1.21581014575475e-101!GO:0043170;macromolecule metabolic process;3.57129662755738e-95!GO:0032991;macromolecular complex;5.18112940744522e-95!GO:0044428;nuclear part;2.79371457440122e-85!GO:0030529;ribonucleoprotein complex;2.30491443858557e-81!GO:0003723;RNA binding;2.30491443858557e-81!GO:0043233;organelle lumen;7.75771853860387e-77!GO:0031974;membrane-enclosed lumen;7.75771853860387e-77!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.38706198494844e-68!GO:0043283;biopolymer metabolic process;4.09429974495012e-68!GO:0010467;gene expression;6.30336858521551e-65!GO:0005515;protein binding;4.80950725143366e-63!GO:0005739;mitochondrion;8.68282543466832e-60!GO:0006396;RNA processing;9.66234789834431e-54!GO:0031981;nuclear lumen;1.29582891035975e-49!GO:0003676;nucleic acid binding;4.93115354030807e-49!GO:0043234;protein complex;2.8982564101861e-47!GO:0006412;translation;1.48731224286558e-46!GO:0016043;cellular component organization and biogenesis;3.83761817084703e-46!GO:0033036;macromolecule localization;2.78257902797611e-45!GO:0043228;non-membrane-bound organelle;2.78257902797611e-45!GO:0043232;intracellular non-membrane-bound organelle;2.78257902797611e-45!GO:0005840;ribosome;2.12364267738195e-44!GO:0016071;mRNA metabolic process;2.31322988037454e-44!GO:0015031;protein transport;8.70961558415759e-44!GO:0031090;organelle membrane;8.50841698352043e-43!GO:0008380;RNA splicing;4.63323102875303e-41!GO:0008104;protein localization;2.41525091228921e-40!GO:0006259;DNA metabolic process;2.92964841354771e-39!GO:0045184;establishment of protein localization;4.88629284539231e-39!GO:0044429;mitochondrial part;1.92623660804753e-38!GO:0006397;mRNA processing;3.16908720184401e-38!GO:0016070;RNA metabolic process;1.29538186531986e-37!GO:0003735;structural constituent of ribosome;2.05798849301733e-37!GO:0031967;organelle envelope;3.33937132835345e-37!GO:0031975;envelope;5.52654162694778e-37!GO:0019538;protein metabolic process;4.34961180312651e-36!GO:0006996;organelle organization and biogenesis;2.72393748172933e-35!GO:0046907;intracellular transport;1.01224275007342e-34!GO:0009058;biosynthetic process;4.11695511857995e-34!GO:0044249;cellular biosynthetic process;5.45084359086477e-34!GO:0065003;macromolecular complex assembly;9.30473520924434e-34!GO:0044267;cellular protein metabolic process;9.70313978682871e-33!GO:0009059;macromolecule biosynthetic process;1.42575532396935e-32!GO:0044260;cellular macromolecule metabolic process;5.91903359740574e-32!GO:0033279;ribosomal subunit;6.337705334983e-32!GO:0005654;nucleoplasm;5.85866083070593e-31!GO:0007049;cell cycle;1.17767006202481e-30!GO:0005829;cytosol;2.08574030557142e-30!GO:0022607;cellular component assembly;1.16524843999045e-29!GO:0006886;intracellular protein transport;2.17746339200596e-29!GO:0005681;spliceosome;6.68954217916956e-29!GO:0022613;ribonucleoprotein complex biogenesis and assembly;7.8539991548976e-28!GO:0005694;chromosome;9.07482625822759e-27!GO:0000166;nucleotide binding;1.01271989103036e-26!GO:0006974;response to DNA damage stimulus;3.70957487551649e-25!GO:0044451;nucleoplasm part;1.10156276954977e-24!GO:0019866;organelle inner membrane;2.63268168062236e-23!GO:0044427;chromosomal part;3.93377594130757e-23!GO:0051649;establishment of cellular localization;4.44079998206492e-23!GO:0051641;cellular localization;9.64671013293871e-23!GO:0005740;mitochondrial envelope;5.79436934331239e-22!GO:0022402;cell cycle process;6.74089578631114e-22!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.18452022956677e-21!GO:0005743;mitochondrial inner membrane;4.01079462030478e-21!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.62967477784285e-21!GO:0016462;pyrophosphatase activity;5.17489795822048e-21!GO:0016817;hydrolase activity, acting on acid anhydrides;5.48448937847371e-21!GO:0031966;mitochondrial membrane;1.02368741445481e-20!GO:0017111;nucleoside-triphosphatase activity;1.78935953793113e-20!GO:0005730;nucleolus;2.03230250699062e-20!GO:0016874;ligase activity;3.37593105289947e-20!GO:0006119;oxidative phosphorylation;6.07945244186085e-20!GO:0006281;DNA repair;6.81244234681992e-20!GO:0031980;mitochondrial lumen;9.91807716495071e-20!GO:0005759;mitochondrial matrix;9.91807716495071e-20!GO:0000278;mitotic cell cycle;3.54717653879626e-19!GO:0051603;proteolysis involved in cellular protein catabolic process;5.20440739187527e-19!GO:0019941;modification-dependent protein catabolic process;9.86081000734527e-19!GO:0043632;modification-dependent macromolecule catabolic process;9.86081000734527e-19!GO:0051276;chromosome organization and biogenesis;1.48042371111514e-18!GO:0032553;ribonucleotide binding;1.8780672276119e-18!GO:0032555;purine ribonucleotide binding;1.8780672276119e-18!GO:0044257;cellular protein catabolic process;2.5042805092326e-18!GO:0006511;ubiquitin-dependent protein catabolic process;2.64566533380269e-18!GO:0044445;cytosolic part;3.37487327047568e-18!GO:0012505;endomembrane system;5.71953514568263e-18!GO:0006512;ubiquitin cycle;7.99876522533928e-18!GO:0022618;protein-RNA complex assembly;8.60538342033324e-18!GO:0044265;cellular macromolecule catabolic process;9.17546945212661e-18!GO:0017076;purine nucleotide binding;1.13318974791809e-17!GO:0050794;regulation of cellular process;2.5519165066877e-17!GO:0008134;transcription factor binding;3.81021298098725e-17!GO:0000502;proteasome complex (sensu Eukaryota);8.86909457751445e-17!GO:0043285;biopolymer catabolic process;1.0226368916513e-16!GO:0006260;DNA replication;1.45661572610279e-16!GO:0015935;small ribosomal subunit;1.76813666141195e-16!GO:0015934;large ribosomal subunit;2.0912037754222e-16!GO:0044455;mitochondrial membrane part;2.12464538244601e-16!GO:0048770;pigment granule;2.26220833448047e-16!GO:0042470;melanosome;2.26220833448047e-16!GO:0022403;cell cycle phase;3.37511085317988e-16!GO:0009719;response to endogenous stimulus;3.46727947561307e-16!GO:0051301;cell division;4.22315404779356e-16!GO:0031965;nuclear membrane;6.93650196346387e-16!GO:0005635;nuclear envelope;8.68704886806893e-16!GO:0000087;M phase of mitotic cell cycle;9.28761981665213e-16!GO:0007067;mitosis;1.30051689974514e-15!GO:0005524;ATP binding;2.21431597356977e-15!GO:0006325;establishment and/or maintenance of chromatin architecture;4.01742106671957e-15!GO:0030163;protein catabolic process;4.72221805424745e-15!GO:0006457;protein folding;6.02625731683568e-15!GO:0032559;adenyl ribonucleotide binding;6.11580970488176e-15!GO:0008135;translation factor activity, nucleic acid binding;9.24998990053561e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;9.72180820951693e-15!GO:0000375;RNA splicing, via transesterification reactions;9.72180820951693e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;9.72180820951693e-15!GO:0019222;regulation of metabolic process;9.90463279026573e-15!GO:0000785;chromatin;1.19633367889802e-14!GO:0009057;macromolecule catabolic process;1.59320322043285e-14!GO:0044453;nuclear membrane part;2.01826346829375e-14!GO:0006323;DNA packaging;2.22301149328195e-14!GO:0006605;protein targeting;3.66964702701174e-14!GO:0005761;mitochondrial ribosome;4.05075675206901e-14!GO:0000313;organellar ribosome;4.05075675206901e-14!GO:0030554;adenyl nucleotide binding;4.83752143745559e-14!GO:0004386;helicase activity;5.47621173454983e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;7.51824349143109e-14!GO:0005746;mitochondrial respiratory chain;7.66809713746402e-14!GO:0000279;M phase;7.84319514061155e-14!GO:0042623;ATPase activity, coupled;1.30678036693976e-13!GO:0005783;endoplasmic reticulum;1.32755740621263e-13!GO:0050136;NADH dehydrogenase (quinone) activity;1.33868927863231e-13!GO:0003954;NADH dehydrogenase activity;1.33868927863231e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.33868927863231e-13!GO:0016887;ATPase activity;1.43546183918505e-13!GO:0016604;nuclear body;1.62365572599338e-13!GO:0006403;RNA localization;2.26127392379101e-13!GO:0006366;transcription from RNA polymerase II promoter;2.53646993741097e-13!GO:0050657;nucleic acid transport;2.64226587691525e-13!GO:0051236;establishment of RNA localization;2.64226587691525e-13!GO:0050658;RNA transport;2.64226587691525e-13!GO:0005643;nuclear pore;5.77048137388952e-13!GO:0048193;Golgi vesicle transport;7.3964813491891e-13!GO:0006333;chromatin assembly or disassembly;1.00642083984625e-12!GO:0005794;Golgi apparatus;1.11934336898872e-12!GO:0051082;unfolded protein binding;1.44671326667075e-12!GO:0065004;protein-DNA complex assembly;2.13042265164204e-12!GO:0044432;endoplasmic reticulum part;2.24709139038008e-12!GO:0031323;regulation of cellular metabolic process;3.39085995482231e-12!GO:0044248;cellular catabolic process;7.7206970333912e-12!GO:0006913;nucleocytoplasmic transport;9.97599959580419e-12!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.01875941234177e-11!GO:0051186;cofactor metabolic process;1.26980106217021e-11!GO:0030964;NADH dehydrogenase complex (quinone);1.60931035319732e-11!GO:0045271;respiratory chain complex I;1.60931035319732e-11!GO:0005747;mitochondrial respiratory chain complex I;1.60931035319732e-11!GO:0042775;organelle ATP synthesis coupled electron transport;2.04015044258381e-11!GO:0042773;ATP synthesis coupled electron transport;2.04015044258381e-11!GO:0043412;biopolymer modification;2.08872650195343e-11!GO:0050789;regulation of biological process;2.2876015517557e-11!GO:0051169;nuclear transport;2.2876015517557e-11!GO:0051726;regulation of cell cycle;2.31949042246023e-11!GO:0000074;regulation of progression through cell cycle;2.41977938926175e-11!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.61439691054534e-11!GO:0051028;mRNA transport;2.88134937690079e-11!GO:0006446;regulation of translational initiation;3.71290848177661e-11!GO:0065002;intracellular protein transport across a membrane;3.99043752198584e-11!GO:0042254;ribosome biogenesis and assembly;4.2855769567684e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.40824066494699e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.77244586446854e-11!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);5.29986330422421e-11!GO:0008026;ATP-dependent helicase activity;5.40917286366191e-11!GO:0006350;transcription;6.69361733758536e-11!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;7.05071968781826e-11!GO:0008639;small protein conjugating enzyme activity;7.52930823749065e-11!GO:0010468;regulation of gene expression;1.20003763941738e-10!GO:0006413;translational initiation;1.25452734092089e-10!GO:0016607;nuclear speck;1.4111341600302e-10!GO:0004842;ubiquitin-protein ligase activity;1.98627119050306e-10!GO:0016192;vesicle-mediated transport;2.04168830904972e-10!GO:0015630;microtubule cytoskeleton;2.2606433135696e-10!GO:0008565;protein transporter activity;2.48375993165381e-10!GO:0019787;small conjugating protein ligase activity;2.51378146169454e-10!GO:0003743;translation initiation factor activity;2.62218239439055e-10!GO:0003712;transcription cofactor activity;4.54729565328082e-10!GO:0046930;pore complex;5.60789022240324e-10!GO:0006732;coenzyme metabolic process;6.00458603804964e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;6.1590828028825e-10!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.1074860747585e-10!GO:0006399;tRNA metabolic process;7.4198719185641e-10!GO:0012501;programmed cell death;7.62786940626169e-10!GO:0006334;nucleosome assembly;8.2004928471153e-10!GO:0006915;apoptosis;1.09464642515731e-09!GO:0005789;endoplasmic reticulum membrane;1.16867316230687e-09!GO:0006464;protein modification process;1.83410908370444e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.27795495764011e-09!GO:0031497;chromatin assembly;3.09023981071299e-09!GO:0006261;DNA-dependent DNA replication;4.35918498651393e-09!GO:0016881;acid-amino acid ligase activity;5.75008059888802e-09!GO:0008219;cell death;5.97539059400921e-09!GO:0016265;death;5.97539059400921e-09!GO:0000775;chromosome, pericentric region;6.49210849567423e-09!GO:0032774;RNA biosynthetic process;6.62922547313633e-09!GO:0043687;post-translational protein modification;6.97449742677758e-09!GO:0030532;small nuclear ribonucleoprotein complex;7.39778038943318e-09!GO:0006351;transcription, DNA-dependent;9.44344184516614e-09!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.1440674463469e-08!GO:0005819;spindle;1.36778188991281e-08!GO:0006461;protein complex assembly;1.52445486554874e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.55794233800744e-08!GO:0043566;structure-specific DNA binding;1.65797058753795e-08!GO:0016779;nucleotidyltransferase activity;3.72848477976462e-08!GO:0009060;aerobic respiration;3.85103147742057e-08!GO:0045449;regulation of transcription;6.44686649804844e-08!GO:0015986;ATP synthesis coupled proton transport;6.47984527066309e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;6.47984527066309e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;7.06981797065806e-08!GO:0004812;aminoacyl-tRNA ligase activity;7.06981797065806e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;7.06981797065806e-08!GO:0016568;chromatin modification;7.06981797065806e-08!GO:0009055;electron carrier activity;7.65110041805958e-08!GO:0005768;endosome;7.83309703305158e-08!GO:0005667;transcription factor complex;9.08984812463676e-08!GO:0019829;cation-transporting ATPase activity;9.67940778067652e-08!GO:0009259;ribonucleotide metabolic process;9.73048576748925e-08!GO:0017038;protein import;1.16880150321605e-07!GO:0043038;amino acid activation;1.2365157480946e-07!GO:0006418;tRNA aminoacylation for protein translation;1.2365157480946e-07!GO:0043039;tRNA aminoacylation;1.2365157480946e-07!GO:0016072;rRNA metabolic process;1.31091783595528e-07!GO:0003677;DNA binding;1.31091783595528e-07!GO:0006364;rRNA processing;1.35535963113644e-07!GO:0051188;cofactor biosynthetic process;1.38038386290245e-07!GO:0003697;single-stranded DNA binding;1.53119885846535e-07!GO:0032446;protein modification by small protein conjugation;1.57139535004095e-07!GO:0045333;cellular respiration;1.60146195789297e-07!GO:0005813;centrosome;1.81769780673424e-07!GO:0016567;protein ubiquitination;2.43949246151176e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.96264504730731e-07!GO:0006163;purine nucleotide metabolic process;3.12259394445323e-07!GO:0005815;microtubule organizing center;3.24265763890197e-07!GO:0000245;spliceosome assembly;3.89058621391562e-07!GO:0051246;regulation of protein metabolic process;4.05356541571272e-07!GO:0005839;proteasome core complex (sensu Eukaryota);4.08324956071381e-07!GO:0007051;spindle organization and biogenesis;4.74021911273749e-07!GO:0009260;ribonucleotide biosynthetic process;5.10943077635568e-07!GO:0015078;hydrogen ion transmembrane transporter activity;5.53178492708597e-07!GO:0006164;purine nucleotide biosynthetic process;5.93249665696262e-07!GO:0006355;regulation of transcription, DNA-dependent;7.38743807163483e-07!GO:0048523;negative regulation of cellular process;8.44841219537137e-07!GO:0005657;replication fork;9.48268065777239e-07!GO:0005793;ER-Golgi intermediate compartment;9.70172776423192e-07!GO:0009108;coenzyme biosynthetic process;9.85869360260975e-07!GO:0004298;threonine endopeptidase activity;1.07865179998073e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.11696165254655e-06!GO:0043623;cellular protein complex assembly;1.19489525531941e-06!GO:0031324;negative regulation of cellular metabolic process;1.2288847585655e-06!GO:0009150;purine ribonucleotide metabolic process;1.2983316701228e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.37626249748413e-06!GO:0007005;mitochondrion organization and biogenesis;1.43443642432585e-06!GO:0006888;ER to Golgi vesicle-mediated transport;1.54139633058264e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.64742391650343e-06!GO:0006754;ATP biosynthetic process;1.67037918709639e-06!GO:0006753;nucleoside phosphate metabolic process;1.67037918709639e-06!GO:0000151;ubiquitin ligase complex;1.74426249342005e-06!GO:0009142;nucleoside triphosphate biosynthetic process;1.86250069892539e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.86250069892539e-06!GO:0009152;purine ribonucleotide biosynthetic process;2.46003565734423e-06!GO:0006099;tricarboxylic acid cycle;2.72572267368156e-06!GO:0046356;acetyl-CoA catabolic process;2.72572267368156e-06!GO:0003724;RNA helicase activity;2.76040531991661e-06!GO:0048475;coated membrane;2.76591602272076e-06!GO:0030117;membrane coat;2.76591602272076e-06!GO:0009199;ribonucleoside triphosphate metabolic process;3.0581328166232e-06!GO:0042981;regulation of apoptosis;3.5754653246748e-06!GO:0003682;chromatin binding;3.82068536144146e-06!GO:0009056;catabolic process;3.8213784753531e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.90935684635892e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.90935684635892e-06!GO:0051427;hormone receptor binding;3.93399510857212e-06!GO:0043067;regulation of programmed cell death;4.02381418589826e-06!GO:0009141;nucleoside triphosphate metabolic process;4.30784408486832e-06!GO:0046034;ATP metabolic process;4.31991208413795e-06!GO:0009892;negative regulation of metabolic process;4.37975815416308e-06!GO:0006613;cotranslational protein targeting to membrane;4.52999920208455e-06!GO:0051325;interphase;4.66015490264089e-06!GO:0051329;interphase of mitotic cell cycle;5.00980744916686e-06!GO:0008094;DNA-dependent ATPase activity;5.13987798791145e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;6.04541203225666e-06!GO:0009144;purine nucleoside triphosphate metabolic process;6.04541203225666e-06!GO:0016787;hydrolase activity;6.29399035086564e-06!GO:0045259;proton-transporting ATP synthase complex;7.37425924278725e-06!GO:0005525;GTP binding;7.6826546825937e-06!GO:0000786;nucleosome;8.0068847916276e-06!GO:0051170;nuclear import;8.17978476322502e-06!GO:0051168;nuclear export;8.32506876746763e-06!GO:0065007;biological regulation;8.37356295311525e-06!GO:0003713;transcription coactivator activity;8.41628952138329e-06!GO:0035257;nuclear hormone receptor binding;8.62415505869825e-06!GO:0016740;transferase activity;9.06286509678466e-06!GO:0006084;acetyl-CoA metabolic process;1.09407162979091e-05!GO:0006916;anti-apoptosis;1.21003731512494e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.22134610381497e-05!GO:0016564;transcription repressor activity;1.24359502485324e-05!GO:0003924;GTPase activity;1.4558970856363e-05!GO:0030120;vesicle coat;1.45667086764824e-05!GO:0030662;coated vesicle membrane;1.45667086764824e-05!GO:0043069;negative regulation of programmed cell death;1.45847426912389e-05!GO:0006752;group transfer coenzyme metabolic process;1.59749124228481e-05!GO:0016563;transcription activator activity;1.68765552721344e-05!GO:0044440;endosomal part;1.75072756413939e-05!GO:0010008;endosome membrane;1.75072756413939e-05!GO:0009117;nucleotide metabolic process;1.83116180492435e-05!GO:0006612;protein targeting to membrane;1.99683586278872e-05!GO:0048519;negative regulation of biological process;2.12962602218707e-05!GO:0003690;double-stranded DNA binding;2.39372949557745e-05!GO:0006606;protein import into nucleus;2.57549122601353e-05!GO:0043066;negative regulation of apoptosis;2.6034330376925e-05!GO:0000075;cell cycle checkpoint;2.62300146352041e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.64825510365414e-05!GO:0009109;coenzyme catabolic process;3.49531853007535e-05!GO:0006414;translational elongation;3.87770572587401e-05!GO:0000079;regulation of cyclin-dependent protein kinase activity;3.98597493033504e-05!GO:0044431;Golgi apparatus part;4.88040091682905e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;5.54325565813297e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;5.74663658232512e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;5.80219601799973e-05!GO:0005762;mitochondrial large ribosomal subunit;6.85439621889543e-05!GO:0000315;organellar large ribosomal subunit;6.85439621889543e-05!GO:0016363;nuclear matrix;6.88329796181552e-05!GO:0045786;negative regulation of progression through cell cycle;7.13883045640076e-05!GO:0051052;regulation of DNA metabolic process;8.36030150847045e-05!GO:0005798;Golgi-associated vesicle;8.57135861261983e-05!GO:0008186;RNA-dependent ATPase activity;9.12471252418803e-05!GO:0008654;phospholipid biosynthetic process;9.26431089931067e-05!GO:0051187;cofactor catabolic process;9.54624783607612e-05!GO:0032561;guanyl ribonucleotide binding;9.91043601077028e-05!GO:0019001;guanyl nucleotide binding;9.91043601077028e-05!GO:0006302;double-strand break repair;0.000100246695854274!GO:0006793;phosphorus metabolic process;0.000104092411036663!GO:0006796;phosphate metabolic process;0.000104092411036663!GO:0043021;ribonucleoprotein binding;0.000126053642653739!GO:0006402;mRNA catabolic process;0.000136745349404053!GO:0000776;kinetochore;0.000137099970373871!GO:0007264;small GTPase mediated signal transduction;0.000138372273349164!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000138541565414787!GO:0042802;identical protein binding;0.000146643373207483!GO:0003684;damaged DNA binding;0.000152412091156914!GO:0048471;perinuclear region of cytoplasm;0.000152620209273718!GO:0007010;cytoskeleton organization and biogenesis;0.000167647716964284!GO:0000314;organellar small ribosomal subunit;0.000167647716964284!GO:0005763;mitochondrial small ribosomal subunit;0.000167647716964284!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000169787193480625!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0001891289489212!GO:0005773;vacuole;0.00020601465742801!GO:0003714;transcription corepressor activity;0.000222172862365122!GO:0003729;mRNA binding;0.00022248802857181!GO:0031988;membrane-bound vesicle;0.000243287169787005!GO:0016481;negative regulation of transcription;0.00026186183493898!GO:0005770;late endosome;0.00027698448900639!GO:0004004;ATP-dependent RNA helicase activity;0.00028954614336003!GO:0016023;cytoplasmic membrane-bound vesicle;0.000291048748126913!GO:0005874;microtubule;0.000303870768710447!GO:0031252;leading edge;0.000331492429409968!GO:0031982;vesicle;0.000331492429409968!GO:0003702;RNA polymerase II transcription factor activity;0.000400849081858862!GO:0031410;cytoplasmic vesicle;0.00041784695250221!GO:0006401;RNA catabolic process;0.000426835713940217!GO:0007088;regulation of mitosis;0.00050625929387706!GO:0051789;response to protein stimulus;0.000506479393876347!GO:0006986;response to unfolded protein;0.000506479393876347!GO:0003899;DNA-directed RNA polymerase activity;0.000538403615889681!GO:0006839;mitochondrial transport;0.000669300288996825!GO:0007059;chromosome segregation;0.000704842335305099!GO:0005885;Arp2/3 protein complex;0.000711211391354376!GO:0007017;microtubule-based process;0.000720447486255371!GO:0005048;signal sequence binding;0.000726185778296947!GO:0005876;spindle microtubule;0.000732698300471933!GO:0007052;mitotic spindle organization and biogenesis;0.000747137649004273!GO:0003746;translation elongation factor activity;0.000749767519094007!GO:0000323;lytic vacuole;0.000799616966184683!GO:0005764;lysosome;0.000799616966184683!GO:0005788;endoplasmic reticulum lumen;0.00084544403250287!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00085447354010925!GO:0006611;protein export from nucleus;0.0008750542906128!GO:0003678;DNA helicase activity;0.000916633655364384!GO:0016310;phosphorylation;0.000992288352332271!GO:0005769;early endosome;0.00100811083114701!GO:0000228;nuclear chromosome;0.0010523489384837!GO:0045893;positive regulation of transcription, DNA-dependent;0.0010584795782481!GO:0042770;DNA damage response, signal transduction;0.00106471719708229!GO:0000049;tRNA binding;0.00111966175888907!GO:0045941;positive regulation of transcription;0.00116378074283618!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00116928324861222!GO:0006417;regulation of translation;0.00117934852976574!GO:0048500;signal recognition particle;0.00120299234876682!GO:0044452;nucleolar part;0.00128160349815364!GO:0019899;enzyme binding;0.00131534826539972!GO:0000059;protein import into nucleus, docking;0.00132423961627259!GO:0032508;DNA duplex unwinding;0.00135702325957519!GO:0032392;DNA geometric change;0.00135702325957519!GO:0051920;peroxiredoxin activity;0.00136514865196341!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00137706174391083!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00137706174391083!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00137706174391083!GO:0030867;rough endoplasmic reticulum membrane;0.00137706174391083!GO:0046474;glycerophospholipid biosynthetic process;0.00137978682120524!GO:0008033;tRNA processing;0.00138127663172454!GO:0051287;NAD binding;0.00140135401464551!GO:0006405;RNA export from nucleus;0.00140401657925583!GO:0051252;regulation of RNA metabolic process;0.00141987967374366!GO:0000139;Golgi membrane;0.00147093515884722!GO:0005684;U2-dependent spliceosome;0.00147332857690146!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00155426189720993!GO:0006268;DNA unwinding during replication;0.00155588191512615!GO:0000086;G2/M transition of mitotic cell cycle;0.00158049978222249!GO:0043681;protein import into mitochondrion;0.00167626398241878!GO:0006352;transcription initiation;0.00168299695275482!GO:0030118;clathrin coat;0.00172176923442885!GO:0016251;general RNA polymerase II transcription factor activity;0.00173296607028603!GO:0009165;nucleotide biosynthetic process;0.0018113179432573!GO:0031124;mRNA 3'-end processing;0.00187789702576726!GO:0008312;7S RNA binding;0.00195048306204299!GO:0006891;intra-Golgi vesicle-mediated transport;0.00198630039016741!GO:0008601;protein phosphatase type 2A regulator activity;0.00205251346865192!GO:0008234;cysteine-type peptidase activity;0.00209807802347853!GO:0046489;phosphoinositide biosynthetic process;0.00227814353891944!GO:0016741;transferase activity, transferring one-carbon groups;0.00229425226435885!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00230586889531243!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00232531735828157!GO:0045892;negative regulation of transcription, DNA-dependent;0.00232531735828157!GO:0019783;small conjugating protein-specific protease activity;0.00244691360874446!GO:0008139;nuclear localization sequence binding;0.00245125161218397!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00257204682991011!GO:0045047;protein targeting to ER;0.00257204682991011!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00260797829035676!GO:0046966;thyroid hormone receptor binding;0.00261647037360131!GO:0000792;heterochromatin;0.00268531180507158!GO:0004527;exonuclease activity;0.00270546942603573!GO:0005637;nuclear inner membrane;0.00277439221703708!GO:0007093;mitotic cell cycle checkpoint;0.00287569459865724!GO:0008022;protein C-terminus binding;0.00288708278715798!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00297032860015977!GO:0015631;tubulin binding;0.00305308060916136!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00324470996798492!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00328410910214906!GO:0008168;methyltransferase activity;0.00335879969794513!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00346026243179702!GO:0043488;regulation of mRNA stability;0.00362869229252018!GO:0043487;regulation of RNA stability;0.00362869229252018!GO:0030132;clathrin coat of coated pit;0.00363642993073354!GO:0015980;energy derivation by oxidation of organic compounds;0.0036457042822356!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00368593410741958!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00368593410741958!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00369960041345223!GO:0004843;ubiquitin-specific protease activity;0.0037341546268684!GO:0016859;cis-trans isomerase activity;0.00380411213322001!GO:0016853;isomerase activity;0.0040500886770382!GO:0045045;secretory pathway;0.00413536088066198!GO:0006626;protein targeting to mitochondrion;0.00424720283393731!GO:0031123;RNA 3'-end processing;0.00427012001473408!GO:0043596;nuclear replication fork;0.00436178810943687!GO:0006275;regulation of DNA replication;0.0045473829669518!GO:0050662;coenzyme binding;0.00469870792966026!GO:0006310;DNA recombination;0.00473893119444321!GO:0000922;spindle pole;0.00480100929854731!GO:0048522;positive regulation of cellular process;0.00489567981817619!GO:0006284;base-excision repair;0.00490340508404825!GO:0006541;glutamine metabolic process;0.00492301740334899!GO:0033116;ER-Golgi intermediate compartment membrane;0.00494366149053638!GO:0035258;steroid hormone receptor binding;0.00505677946054841!GO:0006270;DNA replication initiation;0.00509478033153095!GO:0030131;clathrin adaptor complex;0.00515402758328815!GO:0008270;zinc ion binding;0.00554395056959941!GO:0031072;heat shock protein binding;0.00564053885678935!GO:0015992;proton transport;0.00571898881817275!GO:0042393;histone binding;0.00589296493395612!GO:0006818;hydrogen transport;0.00591445591401993!GO:0009112;nucleobase metabolic process;0.00597695801063675!GO:0000725;recombinational repair;0.00609518199250661!GO:0000724;double-strand break repair via homologous recombination;0.00609518199250661!GO:0005791;rough endoplasmic reticulum;0.00610771706984354!GO:0046983;protein dimerization activity;0.00613102156408479!GO:0004221;ubiquitin thiolesterase activity;0.00626446822200185!GO:0031326;regulation of cellular biosynthetic process;0.00634056083858494!GO:0030521;androgen receptor signaling pathway;0.00652782293844819!GO:0006144;purine base metabolic process;0.00661061431666829!GO:0006650;glycerophospholipid metabolic process;0.00661492310482622!GO:0016197;endosome transport;0.00693127644998266!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00693127644998266!GO:0015399;primary active transmembrane transporter activity;0.00693127644998266!GO:0030119;AP-type membrane coat adaptor complex;0.00695445601474013!GO:0030036;actin cytoskeleton organization and biogenesis;0.00697518484597763!GO:0043284;biopolymer biosynthetic process;0.00703833866055519!GO:0045454;cell redox homeostasis;0.00726044183818352!GO:0030663;COPI coated vesicle membrane;0.00726044183818352!GO:0030126;COPI vesicle coat;0.00726044183818352!GO:0016491;oxidoreductase activity;0.00726949526445936!GO:0030658;transport vesicle membrane;0.00751242800610193!GO:0006383;transcription from RNA polymerase III promoter;0.00753027139987394!GO:0030027;lamellipodium;0.00764395747494977!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00766077630061713!GO:0016584;nucleosome positioning;0.00768907265735221!GO:0007006;mitochondrial membrane organization and biogenesis;0.0076951006289757!GO:0048487;beta-tubulin binding;0.00788927215689803!GO:0016272;prefoldin complex;0.00795895474959029!GO:0040029;regulation of gene expression, epigenetic;0.00809753906993765!GO:0004674;protein serine/threonine kinase activity;0.00830984772655519!GO:0044454;nuclear chromosome part;0.0083113229669709!GO:0004518;nuclease activity;0.0083197118140315!GO:0009116;nucleoside metabolic process;0.00839783672163392!GO:0016126;sterol biosynthetic process;0.0086496655699093!GO:0051101;regulation of DNA binding;0.00896256492762504!GO:0003711;transcription elongation regulator activity;0.00896256492762504!GO:0006338;chromatin remodeling;0.00913894539116743!GO:0000152;nuclear ubiquitin ligase complex;0.00944001449479523!GO:0009615;response to virus;0.00945696198041952!GO:0001726;ruffle;0.00945801808708014!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.00955842105209448!GO:0005905;coated pit;0.00961998916275819!GO:0019843;rRNA binding;0.00982144249782354!GO:0006091;generation of precursor metabolites and energy;0.00982805240409019!GO:0051087;chaperone binding;0.0101625980870376!GO:0006979;response to oxidative stress;0.0102441062025757!GO:0030384;phosphoinositide metabolic process;0.0102444045483376!GO:0006378;mRNA polyadenylation;0.010480307121396!GO:0043433;negative regulation of transcription factor activity;0.0107126963989083!GO:0000159;protein phosphatase type 2A complex;0.010713045225878!GO:0030518;steroid hormone receptor signaling pathway;0.0113064354539871!GO:0032259;methylation;0.0116102256102584!GO:0043022;ribosome binding;0.0119276352607845!GO:0001558;regulation of cell growth;0.0119424350737874!GO:0046467;membrane lipid biosynthetic process;0.0121385641636641!GO:0008629;induction of apoptosis by intracellular signals;0.0122841792684207!GO:0022890;inorganic cation transmembrane transporter activity;0.0123173799444652!GO:0030133;transport vesicle;0.012362899043978!GO:0016791;phosphoric monoester hydrolase activity;0.0128088325210421!GO:0000339;RNA cap binding;0.0132305751827677!GO:0051098;regulation of binding;0.0136875432764393!GO:0003725;double-stranded RNA binding;0.0137366391019406!GO:0043601;nuclear replisome;0.0138605091359548!GO:0030894;replisome;0.0138605091359548!GO:0051540;metal cluster binding;0.013892439862837!GO:0051536;iron-sulfur cluster binding;0.013892439862837!GO:0006509;membrane protein ectodomain proteolysis;0.0140350003373797!GO:0033619;membrane protein proteolysis;0.0140350003373797!GO:0005832;chaperonin-containing T-complex;0.0140350003373797!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0140445326646352!GO:0008287;protein serine/threonine phosphatase complex;0.0140445326646352!GO:0032984;macromolecular complex disassembly;0.014118037713836!GO:0000910;cytokinesis;0.0147564904493707!GO:0043624;cellular protein complex disassembly;0.0150533941506!GO:0006376;mRNA splice site selection;0.0150948734772858!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0150948734772858!GO:0006289;nucleotide-excision repair;0.0151953751361796!GO:0006767;water-soluble vitamin metabolic process;0.0154793881121484!GO:0016790;thiolester hydrolase activity;0.0157144818196593!GO:0043130;ubiquitin binding;0.0163526850972206!GO:0032182;small conjugating protein binding;0.0163526850972206!GO:0030660;Golgi-associated vesicle membrane;0.0166254012170197!GO:0000819;sister chromatid segregation;0.0176563632164581!GO:0008610;lipid biosynthetic process;0.0176775351288217!GO:0006506;GPI anchor biosynthetic process;0.0178199398551834!GO:0000790;nuclear chromatin;0.0178199398551834!GO:0005663;DNA replication factor C complex;0.0178460337404615!GO:0043241;protein complex disassembly;0.0180650447956556!GO:0004003;ATP-dependent DNA helicase activity;0.0182111591302608!GO:0046483;heterocycle metabolic process;0.0184009962203303!GO:0045947;negative regulation of translational initiation;0.0184527544414589!GO:0030880;RNA polymerase complex;0.0185051491107888!GO:0008250;oligosaccharyl transferase complex;0.0185089944773664!GO:0030137;COPI-coated vesicle;0.0186295038324177!GO:0043414;biopolymer methylation;0.0186694303200112!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.0186963827081708!GO:0043189;H4/H2A histone acetyltransferase complex;0.018858059784799!GO:0030134;ER to Golgi transport vesicle;0.0189103867683542!GO:0009119;ribonucleoside metabolic process;0.0193049854378449!GO:0016044;membrane organization and biogenesis;0.0194173478285314!GO:0031902;late endosome membrane;0.0194648308890146!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0199414793839929!GO:0009889;regulation of biosynthetic process;0.0199414793839929!GO:0030029;actin filament-based process;0.0200784059532049!GO:0005669;transcription factor TFIID complex;0.0203279159038611!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0203279159038611!GO:0016884;carbon-nitrogen ligase activity, with glutamine as amido-N-donor;0.0204988152946312!GO:0000070;mitotic sister chromatid segregation;0.0207456623384626!GO:0008538;proteasome activator activity;0.0208922355031629!GO:0004576;oligosaccharyl transferase activity;0.0210958849716897!GO:0046128;purine ribonucleoside metabolic process;0.0216704487524032!GO:0042278;purine nucleoside metabolic process;0.0216704487524032!GO:0050681;androgen receptor binding;0.0220627207317408!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0222455961988776!GO:0035267;NuA4 histone acetyltransferase complex;0.0223977471530208!GO:0043492;ATPase activity, coupled to movement of substances;0.0225588465175492!GO:0008092;cytoskeletal protein binding;0.0225588465175492!GO:0005938;cell cortex;0.0226460808755096!GO:0007265;Ras protein signal transduction;0.0228791577259411!GO:0016408;C-acyltransferase activity;0.0236156920993545!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0236292616885455!GO:0007243;protein kinase cascade;0.0237551529143282!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0237613423247415!GO:0065009;regulation of a molecular function;0.0240545777952473!GO:0008632;apoptotic program;0.0240816045298847!GO:0006892;post-Golgi vesicle-mediated transport;0.0247515880681546!GO:0043065;positive regulation of apoptosis;0.025154117597135!GO:0019752;carboxylic acid metabolic process;0.026021503560683!GO:0000096;sulfur amino acid metabolic process;0.026021503560683!GO:0030176;integral to endoplasmic reticulum membrane;0.0266406036208388!GO:0046914;transition metal ion binding;0.0267769915086858!GO:0017166;vinculin binding;0.0270017610573291!GO:0008017;microtubule binding;0.0271528440080574!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0274861241951799!GO:0005758;mitochondrial intermembrane space;0.0275323803307977!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.0278046465652217!GO:0000123;histone acetyltransferase complex;0.0278125618717125!GO:0006505;GPI anchor metabolic process;0.0281140797776966!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.028197657947881!GO:0031529;ruffle organization and biogenesis;0.0288875658400013!GO:0005869;dynactin complex;0.0288875658400013!GO:0000082;G1/S transition of mitotic cell cycle;0.0294149780727473!GO:0006082;organic acid metabolic process;0.0295406287162012!GO:0030031;cell projection biogenesis;0.0295656539628972!GO:0033673;negative regulation of kinase activity;0.0298974752462637!GO:0006469;negative regulation of protein kinase activity;0.0298974752462637!GO:0030522;intracellular receptor-mediated signaling pathway;0.0301380919527395!GO:0008361;regulation of cell size;0.0302277831131431!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0307193015789659!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0307193015789659!GO:0045936;negative regulation of phosphate metabolic process;0.0308836868235508!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0310476326870389!GO:0000428;DNA-directed RNA polymerase complex;0.0310476326870389!GO:0008630;DNA damage response, signal transduction resulting in induction of apoptosis;0.0314176632642015!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.031663591161709!GO:0015002;heme-copper terminal oxidase activity;0.031663591161709!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.031663591161709!GO:0004129;cytochrome-c oxidase activity;0.031663591161709!GO:0031968;organelle outer membrane;0.031663591161709!GO:0043068;positive regulation of programmed cell death;0.0317558454316562!GO:0045944;positive regulation of transcription from RNA polymerase II promoter;0.0318049872282374!GO:0051053;negative regulation of DNA metabolic process;0.0319008315986932!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0321287017347427!GO:0019867;outer membrane;0.0323679587041108!GO:0042769;DNA damage response, detection of DNA damage;0.0325501021898029!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0326783319690345!GO:0000209;protein polyubiquitination;0.0327003180092523!GO:0006301;postreplication repair;0.03375134577064!GO:0006984;ER-nuclear signaling pathway;0.0342059797235945!GO:0005862;muscle thin filament tropomyosin;0.0344936477719492!GO:0005784;translocon complex;0.0344936477719492!GO:0022406;membrane docking;0.034737896989131!GO:0048278;vesicle docking;0.034737896989131!GO:0042026;protein refolding;0.0349832594604246!GO:0031647;regulation of protein stability;0.0349832594604246!GO:0031570;DNA integrity checkpoint;0.0354794382744335!GO:0008408;3'-5' exonuclease activity;0.0370469164584727!GO:0004860;protein kinase inhibitor activity;0.0371265118686765!GO:0004532;exoribonuclease activity;0.0372668039758598!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0372668039758598!GO:0016049;cell growth;0.0379595756663838!GO:0006695;cholesterol biosynthetic process;0.0379700821219869!GO:0006733;oxidoreduction coenzyme metabolic process;0.0395144925170915!GO:0030127;COPII vesicle coat;0.0396551135164774!GO:0012507;ER to Golgi transport vesicle membrane;0.0396551135164774!GO:0005774;vacuolar membrane;0.0401445604770679!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0405902995188522!GO:0051059;NF-kappaB binding;0.0406711142511383!GO:0051348;negative regulation of transferase activity;0.0425831923838067!GO:0046519;sphingoid metabolic process;0.0425908147858506!GO:0031970;organelle envelope lumen;0.0426784680678693!GO:0004300;enoyl-CoA hydratase activity;0.0437117227287984!GO:0031628;opioid receptor binding;0.0437117227287984!GO:0031852;mu-type opioid receptor binding;0.0437117227287984!GO:0043631;RNA polyadenylation;0.0437157848191054!GO:0032405;MutLalpha complex binding;0.0443016821116064!GO:0006643;membrane lipid metabolic process;0.0443576594846412!GO:0005680;anaphase-promoting complex;0.044361134083816!GO:0006769;nicotinamide metabolic process;0.0447533030851458!GO:0008536;Ran GTPase binding;0.0448163277255254!GO:0006672;ceramide metabolic process;0.0450412708811842!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0453141870962253!GO:0046822;regulation of nucleocytoplasmic transport;0.0458689874512331!GO:0008537;proteasome activator complex;0.0462327724899004!GO:0007050;cell cycle arrest;0.0462574325752946!GO:0005741;mitochondrial outer membrane;0.0468508988828223!GO:0016615;malate dehydrogenase activity;0.0473548177981737!GO:0005720;nuclear heterochromatin;0.0474566867069359!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0483993520097389!GO:0005856;cytoskeleton;0.0486903643684794!GO:0007021;tubulin folding;0.0492313256922746!GO:0003923;GPI-anchor transamidase activity;0.049443561681741!GO:0016255;attachment of GPI anchor to protein;0.049443561681741!GO:0042765;GPI-anchor transamidase complex;0.049443561681741!GO:0006904;vesicle docking during exocytosis;0.0496664644868416 | |||
|sample_id=10470 | |sample_id=10470 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 98: | ||
|sample_tissue=gall bladder | |sample_tissue=gall bladder | ||
|top_motifs=SNAI1..3:2.22120353154;ZEB1:1.86001396966;LMO2:1.79188260922;PITX1..3:1.79019404893;FOXQ1:1.70907573582;HOX{A6,A7,B6,B7}:1.68003878907;STAT1,3:1.6273791309;IRF7:1.60474538523;ZNF384:1.49226191444;E2F1..5:1.47558735266;FOXL1:1.45662552213;NKX2-3_NKX2-5:1.40482923189;NFY{A,B,C}:1.35887815356;XCPE1{core}:1.29917739316;TEF:1.28226466195;ZBTB16:1.26883090327;CDC5L:1.24588938401;TFDP1:1.14586032772;POU2F1..3:1.03488356771;SP1:1.01682452928;MYOD1:1.0067427355;TEAD1:1.00168584339;NKX6-1,2:0.989903751639;PAX1,9:0.988270872125;FOXD3:0.969478246211;NKX2-1,4:0.904749658281;FOXM1:0.903774436216;EVI1:0.891103334038;LHX3,4:0.871884211067;STAT5{A,B}:0.858344501973;RBPJ:0.851017270892;EP300:0.847721252816;NRF1:0.831195752007;PAX4:0.830651591536;RORA:0.82790415798;FOXP1:0.827506908906;FOXN1:0.819951556065;LEF1_TCF7_TCF7L1,2:0.778754444596;ELK1,4_GABP{A,B1}:0.758342252481;IRF1,2:0.753091972984;ZNF148:0.752888746689;PDX1:0.667270811225;ONECUT1,2:0.633478667769;GFI1:0.586233421427;ZNF143:0.578029735917;RFX2..5_RFXANK_RFXAP:0.530205173176;IKZF2:0.518203123452;FOX{I1,J2}:0.512277101966;HMGA1,2:0.511932698033;RFX1:0.505618388898;CDX1,2,4:0.462238103157;SOX{8,9,10}:0.460493785471;NR6A1:0.44761727899;AIRE:0.447140403288;HOXA9_MEIS1:0.422265812071;DBP:0.413892601168;TBX4,5:0.37847097059;VSX1,2:0.367765350128;HNF1A:0.344552083323;ADNP_IRX_SIX_ZHX:0.306534434155;FOXO1,3,4:0.298605823724;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.282209057789;FOX{D1,D2}:0.280849134512;PAX8:0.274146220429;RREB1:0.265616375823;TAL1_TCF{3,4,12}:0.245677807756;PAX5:0.205649363392;PBX1:0.19701514668;MTF1:0.195326531332;TFAP2{A,C}:0.130222891213;MED-1{core}:0.127282391168;TOPORS:0.124811240292;GZF1:0.11939590837;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.107173953635;BREu{core}:0.102153752525;HOX{A4,D4}:0.100580868638;ZNF423:0.096422288613;MTE{core}:0.0949548458551;HNF4A_NR2F1,2:0.0801982488239;ARID5B:0.0516888797497;ZFP161:0.0365888444006;MYB:0.0320930767077;TFAP2B:0.00706132942081;ATF4:0.0037897731093;BPTF:0.00117242841381;NKX3-1:-0.0315615209672;POU1F1:-0.039083088081;CUX2:-0.0675889736445;HBP1_HMGB_SSRP1_UBTF:-0.0708899075429;PAX3,7:-0.0730258742859;NFE2L2:-0.0737783806579;FOXA2:-0.088553760859;OCT4_SOX2{dimer}:-0.098194003611;PRRX1,2:-0.115158531196;IKZF1:-0.156579762819;MEF2{A,B,C,D}:-0.161107730942;ATF2:-0.168230192766;TP53:-0.171264145619;TBP:-0.172474089474;YY1:-0.177093504251;SOX5:-0.179544413917;HIF1A:-0.179570217296;T:-0.181512206751;ALX4:-0.192201642312;TLX1..3_NFIC{dimer}:-0.193378546636;STAT2,4,6:-0.196646078762;KLF4:-0.204723203457;bHLH_family:-0.20899979715;UFEwm:-0.218570054634;FOS_FOS{B,L1}_JUN{B,D}:-0.221297640762;ZBTB6:-0.226474836958;SOX2:-0.226756069413;HSF1,2:-0.234536595581;PRDM1:-0.245705363886;ATF5_CREB3:-0.251328576492;FOXP3:-0.262347793027;PATZ1:-0.262491884265;EBF1:-0.265969022878;ESR1:-0.278584462699;POU5F1:-0.282125017381;MYBL2:-0.291406246342;NKX3-2:-0.291791625368;JUN:-0.306982274885;FOSL2:-0.308213613408;NFKB1_REL_RELA:-0.318351527615;REST:-0.322240118323;NFIX:-0.333718741561;ELF1,2,4:-0.334490772659;HIC1:-0.357549941556;GATA4:-0.35926125027;MAZ:-0.366639166119;ESRRA:-0.37097540886;HAND1,2:-0.378244075014;BACH2:-0.379232470467;EN1,2:-0.391352806334;TFAP4:-0.393963558033;CREB1:-0.426723692931;NR1H4:-0.448687595049;GTF2I:-0.460083186138;GLI1..3:-0.469096697959;GCM1,2:-0.487865545387;GATA6:-0.52453158627;PPARG:-0.541616549906;NFIL3:-0.562983035943;DMAP1_NCOR{1,2}_SMARC:-0.571011534276;ZIC1..3:-0.57147076715;HLF:-0.578908329348;CEBPA,B_DDIT3:-0.579648499782;SPIB:-0.583732674113;NR5A1,2:-0.586372038117;NFE2:-0.58981526833;ALX1:-0.600678922106;AR:-0.615031228207;TFCP2:-0.615555738216;SREBF1,2:-0.619248590516;RXRA_VDR{dimer}:-0.62744170939;HOX{A5,B5}:-0.633323821004;HES1:-0.639819333418;CRX:-0.666171825536;SRF:-0.669526506705;TLX2:-0.673392940566;PAX2:-0.680091826182;EGR1..3:-0.730371462997;SOX17:-0.734952112022;NANOG:-0.741562719041;SPI1:-0.74686620387;ETS1,2:-0.75596835585;TGIF1:-0.794862028964;MZF1:-0.803767064998;FOX{F1,F2,J1}:-0.848766476443;MYFfamily:-0.870840505459;SPZ1:-0.887243619195;NHLH1,2:-0.893119929448;RUNX1..3:-0.909653565417;GFI1B:-0.914267766526;MAFB:-0.965144749969;POU6F1:-1.01001029466;NFE2L1:-1.0100633765;AHR_ARNT_ARNT2:-1.01477418024;GTF2A1,2:-1.02051304809;ATF6:-1.1402303813;RXR{A,B,G}:-1.17230778248;POU3F1..4:-1.18070064095;NR3C1:-1.19243993398;NKX2-2,8:-1.33016381443;PAX6:-1.35082586387;XBP1:-1.41814537024;ZNF238:-1.66861534056;HMX1:-2.01018337396;NFATC1..3:-2.04340242309;NANOG{mouse}:-2.24697790537;SMAD1..7,9:-2.51377167375 | |top_motifs=SNAI1..3:2.22120353154;ZEB1:1.86001396966;LMO2:1.79188260922;PITX1..3:1.79019404893;FOXQ1:1.70907573582;HOX{A6,A7,B6,B7}:1.68003878907;STAT1,3:1.6273791309;IRF7:1.60474538523;ZNF384:1.49226191444;E2F1..5:1.47558735266;FOXL1:1.45662552213;NKX2-3_NKX2-5:1.40482923189;NFY{A,B,C}:1.35887815356;XCPE1{core}:1.29917739316;TEF:1.28226466195;ZBTB16:1.26883090327;CDC5L:1.24588938401;TFDP1:1.14586032772;POU2F1..3:1.03488356771;SP1:1.01682452928;MYOD1:1.0067427355;TEAD1:1.00168584339;NKX6-1,2:0.989903751639;PAX1,9:0.988270872125;FOXD3:0.969478246211;NKX2-1,4:0.904749658281;FOXM1:0.903774436216;EVI1:0.891103334038;LHX3,4:0.871884211067;STAT5{A,B}:0.858344501973;RBPJ:0.851017270892;EP300:0.847721252816;NRF1:0.831195752007;PAX4:0.830651591536;RORA:0.82790415798;FOXP1:0.827506908906;FOXN1:0.819951556065;LEF1_TCF7_TCF7L1,2:0.778754444596;ELK1,4_GABP{A,B1}:0.758342252481;IRF1,2:0.753091972984;ZNF148:0.752888746689;PDX1:0.667270811225;ONECUT1,2:0.633478667769;GFI1:0.586233421427;ZNF143:0.578029735917;RFX2..5_RFXANK_RFXAP:0.530205173176;IKZF2:0.518203123452;FOX{I1,J2}:0.512277101966;HMGA1,2:0.511932698033;RFX1:0.505618388898;CDX1,2,4:0.462238103157;SOX{8,9,10}:0.460493785471;NR6A1:0.44761727899;AIRE:0.447140403288;HOXA9_MEIS1:0.422265812071;DBP:0.413892601168;TBX4,5:0.37847097059;VSX1,2:0.367765350128;HNF1A:0.344552083323;ADNP_IRX_SIX_ZHX:0.306534434155;FOXO1,3,4:0.298605823724;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.282209057789;FOX{D1,D2}:0.280849134512;PAX8:0.274146220429;RREB1:0.265616375823;TAL1_TCF{3,4,12}:0.245677807756;PAX5:0.205649363392;PBX1:0.19701514668;MTF1:0.195326531332;TFAP2{A,C}:0.130222891213;MED-1{core}:0.127282391168;TOPORS:0.124811240292;GZF1:0.11939590837;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.107173953635;BREu{core}:0.102153752525;HOX{A4,D4}:0.100580868638;ZNF423:0.096422288613;MTE{core}:0.0949548458551;HNF4A_NR2F1,2:0.0801982488239;ARID5B:0.0516888797497;ZFP161:0.0365888444006;MYB:0.0320930767077;TFAP2B:0.00706132942081;ATF4:0.0037897731093;BPTF:0.00117242841381;NKX3-1:-0.0315615209672;POU1F1:-0.039083088081;CUX2:-0.0675889736445;HBP1_HMGB_SSRP1_UBTF:-0.0708899075429;PAX3,7:-0.0730258742859;NFE2L2:-0.0737783806579;FOXA2:-0.088553760859;OCT4_SOX2{dimer}:-0.098194003611;PRRX1,2:-0.115158531196;IKZF1:-0.156579762819;MEF2{A,B,C,D}:-0.161107730942;ATF2:-0.168230192766;TP53:-0.171264145619;TBP:-0.172474089474;YY1:-0.177093504251;SOX5:-0.179544413917;HIF1A:-0.179570217296;T:-0.181512206751;ALX4:-0.192201642312;TLX1..3_NFIC{dimer}:-0.193378546636;STAT2,4,6:-0.196646078762;KLF4:-0.204723203457;bHLH_family:-0.20899979715;UFEwm:-0.218570054634;FOS_FOS{B,L1}_JUN{B,D}:-0.221297640762;ZBTB6:-0.226474836958;SOX2:-0.226756069413;HSF1,2:-0.234536595581;PRDM1:-0.245705363886;ATF5_CREB3:-0.251328576492;FOXP3:-0.262347793027;PATZ1:-0.262491884265;EBF1:-0.265969022878;ESR1:-0.278584462699;POU5F1:-0.282125017381;MYBL2:-0.291406246342;NKX3-2:-0.291791625368;JUN:-0.306982274885;FOSL2:-0.308213613408;NFKB1_REL_RELA:-0.318351527615;REST:-0.322240118323;NFIX:-0.333718741561;ELF1,2,4:-0.334490772659;HIC1:-0.357549941556;GATA4:-0.35926125027;MAZ:-0.366639166119;ESRRA:-0.37097540886;HAND1,2:-0.378244075014;BACH2:-0.379232470467;EN1,2:-0.391352806334;TFAP4:-0.393963558033;CREB1:-0.426723692931;NR1H4:-0.448687595049;GTF2I:-0.460083186138;GLI1..3:-0.469096697959;GCM1,2:-0.487865545387;GATA6:-0.52453158627;PPARG:-0.541616549906;NFIL3:-0.562983035943;DMAP1_NCOR{1,2}_SMARC:-0.571011534276;ZIC1..3:-0.57147076715;HLF:-0.578908329348;CEBPA,B_DDIT3:-0.579648499782;SPIB:-0.583732674113;NR5A1,2:-0.586372038117;NFE2:-0.58981526833;ALX1:-0.600678922106;AR:-0.615031228207;TFCP2:-0.615555738216;SREBF1,2:-0.619248590516;RXRA_VDR{dimer}:-0.62744170939;HOX{A5,B5}:-0.633323821004;HES1:-0.639819333418;CRX:-0.666171825536;SRF:-0.669526506705;TLX2:-0.673392940566;PAX2:-0.680091826182;EGR1..3:-0.730371462997;SOX17:-0.734952112022;NANOG:-0.741562719041;SPI1:-0.74686620387;ETS1,2:-0.75596835585;TGIF1:-0.794862028964;MZF1:-0.803767064998;FOX{F1,F2,J1}:-0.848766476443;MYFfamily:-0.870840505459;SPZ1:-0.887243619195;NHLH1,2:-0.893119929448;RUNX1..3:-0.909653565417;GFI1B:-0.914267766526;MAFB:-0.965144749969;POU6F1:-1.01001029466;NFE2L1:-1.0100633765;AHR_ARNT_ARNT2:-1.01477418024;GTF2A1,2:-1.02051304809;ATF6:-1.1402303813;RXR{A,B,G}:-1.17230778248;POU3F1..4:-1.18070064095;NR3C1:-1.19243993398;NKX2-2,8:-1.33016381443;PAX6:-1.35082586387;XBP1:-1.41814537024;ZNF238:-1.66861534056;HMX1:-2.01018337396;NFATC1..3:-2.04340242309;NANOG{mouse}:-2.24697790537;SMAD1..7,9:-2.51377167375 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10470-106I2;search_select_hide=table117:FF:10470-106I2 | |||
}} | }} | ||
Latest revision as of 14:25, 3 June 2020
| Name: | gall bladder carcinoma cell line:TGBC14TKB |
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| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11256 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11256
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11256
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.419 |
| 10 | 10 | 0.677 |
| 100 | 100 | 0.43 |
| 101 | 101 | 0.785 |
| 102 | 102 | 0.796 |
| 103 | 103 | 0.062 |
| 104 | 104 | 0.61 |
| 105 | 105 | 0.738 |
| 106 | 106 | 0.0467 |
| 107 | 107 | 0.183 |
| 108 | 108 | 0.711 |
| 109 | 109 | 0.451 |
| 11 | 11 | 0.0928 |
| 110 | 110 | 0.811 |
| 111 | 111 | 0.264 |
| 112 | 112 | 0.219 |
| 113 | 113 | 0.28 |
| 114 | 114 | 0.0219 |
| 115 | 115 | 0.999 |
| 116 | 116 | 0.561 |
| 117 | 117 | 0.412 |
| 118 | 118 | 0.85 |
| 119 | 119 | 0.429 |
| 12 | 12 | 0.343 |
| 120 | 120 | 0.33 |
| 121 | 121 | 0.366 |
| 122 | 122 | 0.807 |
| 123 | 123 | 0.193 |
| 124 | 124 | 0.114 |
| 125 | 125 | 0.573 |
| 126 | 126 | 0.755 |
| 127 | 127 | 0.369 |
| 128 | 128 | 0.0127 |
| 129 | 129 | 0.998 |
| 13 | 13 | 0.0715 |
| 130 | 130 | 0.613 |
| 131 | 131 | 0.313 |
| 132 | 132 | 0.474 |
| 133 | 133 | 0.00822 |
| 134 | 134 | 0.334 |
| 135 | 135 | 0.00902 |
| 136 | 136 | 0.0255 |
| 137 | 137 | 0.216 |
| 138 | 138 | 0.0625 |
| 139 | 139 | 0.0117 |
| 14 | 14 | 0.754 |
| 140 | 140 | 0.735 |
| 141 | 141 | 0.822 |
| 142 | 142 | 0.995 |
| 143 | 143 | 0.00352 |
| 144 | 144 | 0.193 |
| 145 | 145 | 0.48 |
| 146 | 146 | 0.552 |
| 147 | 147 | 0.884 |
| 148 | 148 | 0.078 |
| 149 | 149 | 0.144 |
| 15 | 15 | 0.25 |
| 150 | 150 | 0.402 |
| 151 | 151 | 0.297 |
| 152 | 152 | 0.915 |
| 153 | 153 | 0.111 |
| 154 | 154 | 0.671 |
| 155 | 155 | 0.182 |
| 156 | 156 | 0.612 |
| 157 | 157 | 0.93 |
| 158 | 158 | 0.712 |
| 159 | 159 | 0.133 |
| 16 | 16 | 0.593 |
| 160 | 160 | 0.242 |
| 161 | 161 | 0.418 |
| 162 | 162 | 0.369 |
| 163 | 163 | 0.607 |
| 164 | 164 | 0.957 |
| 165 | 165 | 0.567 |
| 166 | 166 | 0.663 |
| 167 | 167 | 0.653 |
| 168 | 168 | 0.589 |
| 169 | 169 | 0.966 |
| 17 | 17 | 0.72 |
| 18 | 18 | 0.032 |
| 19 | 19 | 0.142 |
| 2 | 2 | 0.608 |
| 20 | 20 | 0.349 |
| 21 | 21 | 0.903 |
| 22 | 22 | 0.724 |
| 23 | 23 | 0.0611 |
| 24 | 24 | 0.599 |
| 25 | 25 | 0.831 |
| 26 | 26 | 0.662 |
| 27 | 27 | 0.644 |
| 28 | 28 | 0.836 |
| 29 | 29 | 0.711 |
| 3 | 3 | 0.292 |
| 30 | 30 | 0.711 |
| 31 | 31 | 0.185 |
| 32 | 32 | 0.0182 |
| 33 | 33 | 0.256 |
| 34 | 34 | 0.402 |
| 35 | 35 | 0.0409 |
| 36 | 36 | 0.941 |
| 37 | 37 | 0.327 |
| 38 | 38 | 0.851 |
| 39 | 39 | 0.601 |
| 4 | 4 | 0.866 |
| 40 | 40 | 0.325 |
| 41 | 41 | 0.00856 |
| 42 | 42 | 0.553 |
| 43 | 43 | 0.159 |
| 44 | 44 | 0.948 |
| 45 | 45 | 0.81 |
| 46 | 46 | 0.107 |
| 47 | 47 | 0.938 |
| 48 | 48 | 0.946 |
| 49 | 49 | 0.0967 |
| 5 | 5 | 0.33 |
| 50 | 50 | 0.381 |
| 51 | 51 | 0.544 |
| 52 | 52 | 0.915 |
| 53 | 53 | 0.544 |
| 54 | 54 | 0.597 |
| 55 | 55 | 0.999 |
| 56 | 56 | 0.664 |
| 57 | 57 | 0.796 |
| 58 | 58 | 0.464 |
| 59 | 59 | 0.113 |
| 6 | 6 | 0.458 |
| 60 | 60 | 0.292 |
| 61 | 61 | 0.594 |
| 62 | 62 | 0.105 |
| 63 | 63 | 0.643 |
| 64 | 64 | 0.549 |
| 65 | 65 | 0.0558 |
| 66 | 66 | 0.221 |
| 67 | 67 | 0.35 |
| 68 | 68 | 0.129 |
| 69 | 69 | 0.47 |
| 7 | 7 | 0.579 |
| 70 | 70 | 0.264 |
| 71 | 71 | 0.522 |
| 72 | 72 | 0.826 |
| 73 | 73 | 0.983 |
| 74 | 74 | 0.0374 |
| 75 | 75 | 0.935 |
| 76 | 76 | 0.644 |
| 77 | 77 | 0.655 |
| 78 | 78 | 0.659 |
| 79 | 79 | 0.133 |
| 8 | 8 | 0.0874 |
| 80 | 80 | 0.0343 |
| 81 | 81 | 0.0748 |
| 82 | 82 | 0.00109 |
| 83 | 83 | 0.594 |
| 84 | 84 | 0.589 |
| 85 | 85 | 0.00516 |
| 86 | 86 | 0.403 |
| 87 | 87 | 0.508 |
| 88 | 88 | 0.716 |
| 89 | 89 | 0.0741 |
| 9 | 9 | 0.187 |
| 90 | 90 | 0.0593 |
| 91 | 91 | 0.24 |
| 92 | 92 | 0.16 |
| 93 | 93 | 0.409 |
| 94 | 94 | 0.257 |
| 95 | 95 | 0.826 |
| 96 | 96 | 0.151 |
| 97 | 97 | 0.65 |
| 98 | 98 | 0.0575 |
| 99 | 99 | 0.621 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11256
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
CL:1000415 epithelial cell of gall bladder
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100297 carcinoma cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
1000415 (epithelial cell of gall bladder)
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002110 (gallbladder)
0002100 (trunk)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0002075 (viscus)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002323 (body cavity)
0005177 (trunk region element)
0005172 (abdomen element)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002417 (abdominal segment of trunk)
0002294 (biliary system)
0001173 (biliary tree)
0000916 (abdomen)
0002423 (hepatobiliary system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
