FF:10593-108D8: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| (24 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005150 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005150 | ||
|ancestors_in_disease_facet=DOID: | |accession_numbers=CAGE;DRX008024;DRR008896;DRZ000321;DRZ001706;DRZ011671;DRZ013056 | ||
|accession_numbers_RNASeq=RNA-Seq;DRX057131;DRR062890;DRZ007966 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000473,UBERON:0000991,UBERON:0005156,UBERON:0000466,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003135,UBERON:0003133,UBERON:0002323,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0003101,UBERON:0000079 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255,CL:0000039,CL:0000586 | |||
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:3095,DOID:305,DOID:2994 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0101120 | |fonse_cell_line=FF:0101120 | ||
|fonse_cell_line_closure=FF:0101120 | |fonse_cell_line_closure=FF:0101120 | ||
| Line 35: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/testicular%2520germ%2520cell%2520embryonal%2520carcinoma%2520cell%2520line%253aNEC15.CNhs12362.10593-108D8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/testicular%2520germ%2520cell%2520embryonal%2520carcinoma%2520cell%2520line%253aNEC15.CNhs12362.10593-108D8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/testicular%2520germ%2520cell%2520embryonal%2520carcinoma%2520cell%2520line%253aNEC15.CNhs12362.10593-108D8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/testicular%2520germ%2520cell%2520embryonal%2520carcinoma%2520cell%2520line%253aNEC15.CNhs12362.10593-108D8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/testicular%2520germ%2520cell%2520embryonal%2520carcinoma%2520cell%2520line%253aNEC15.CNhs12362.10593-108D8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10593-108D8 | |id=FF:10593-108D8 | ||
|is_a=CL:0000586;;DOID:3095;;EFO:0002091 | |is_a=CL:0000586;;DOID:3095;;EFO:0002091;;FF:0000210;;FF:0100297;;UBERON:0000473;;UBERON:0000922 | ||
|is_obsolete= | |||
|library_id=CNhs12362 | |||
|library_id_phase_based=2:CNhs12362 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10593 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10593 | |||
|name=testicular germ cell embryonal carcinoma cell line:NEC15 | |name=testicular germ cell embryonal carcinoma cell line:NEC15 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 62: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12362,LSID914,release011,COMPLETED | |profile_hcage=CNhs12362,LSID914,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0.0381808373167472,0,-0.160318030086386,0,-0.0866469120276698,0.189302524543779,0,0,0,0,0,0,0,0,1.19087476249875,0,0.135952613269937,0.0732745932580414,0,-0.11514217303168,0,0,0,0,0,0.294795035622949,0,0,0.150106841791889,0,0,0,0,0,0,0,0,0,0,0,0,-0.199218508893755,0.0732745932580414,0,0,0.0381808373167472,0,0,0,0,0.426179660084483,0,0,0,0,0,0,0,0.0389602520273319,0,0,-0.0591627898963497,0,0,0,0,0.164196510686744,0,0,0,0.0381808373167472,0,0,0,0,0,0,0,0,0,0,0,0.135952613269937,0,0,0,0.0381808373167472,0,0.359176636688202,0.0381808373167472,0.186970298735158,-0.092461850723476,0,0,0,0,0.00770799510886032,0.342208559799926,0,0,0,0.831830031683254,0,0,0.105743346346567,0,0,0,0.3130818420957,0.0381808373167472,0,0,0,0,0,0.46727295928901,0.105743346346567,0,0,-0.0764506620704105,-0.22631311524936,0.0381808373167472,0,0.105743346346567,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0.135952613269937,0.00770799510886032,0,0,0.239339326327867,0,0,0,0,0.135952613269937,0,0,0,-0.0829823645988208,0.0381808373167472,0.23647710444382,0.249237789367535,0.0366372966290207,0.0381808373167472,-0.203726392442792,0,0,0,0.0562725791484011,0.164196510686744,0.0381808373167472,0.0732745932580414,0.164196510686744,0.135952613269937,-0.022376520605998,0,-0.0504125515893149,0.0528716731732835,0.135952613269937,0.0381808373167472,0,-0.0186252810838506,-0.26729139358166,0,0.164762112906501,0.0373990852691985,0,0,0,0,-0.25115025067595,0,0.255409702194479,0.0814763423633264,0,0.349562689609769,0.080240116488755,0,0,0,-0.622039498800673,-0.186548881709635,0,0,0.806131804751606,0.0846890128157581,0,0,0.214533206887429,0,0.834887586608333,-0.0164080588648683,0,0.114350722613003,0.0732745932580414,0,0.0381808373167472,0,0,0.105743346346567,0,0,0.135952613269937,0,0,-0.0384030481630631,0.0969300257186967,0.00830296794061375,0.261751406228038,0.605577788439063,0.0630348146739755,-0.0639395562078338,0,0.0527964172009715,-0.300011562698525,0.0435640060037232,0.0959419502119947,0.621025411377272,0.00705146139243657,-0.302389727009913,-0.140342460918968,-0.00543385862422251,-0.102657694429691,-0.0741272561130971,-0.1518008822331,-0.0842364303068829,-0.170194338643217,-0.170909051654715,0.0463478516937297,-0.0113232822487441,0.137818191868993,-0.251576812143436,-0.0425774107568018,0,0.505892744851396,0.0732745932580414,0.0425129258514505,0.0381808373167472,0.164472960436459,0.196484538134157,0.24440046447467,0.0362996106745931,-0.330771407897035,0.231393228618304,-0.233839389616083,0.0874115999126481,-0.457436452896595,-0.0855287644089653,-0.233245849819236,0.135952613269937,0.105743346346567,0.0381808373167472,-0.0101192418593983,0.106194887586184,-0.0517578718823285,0,0.589506201485707,0.0676083521925688,0.0190904186583736,0.062695083060702,-0.392299854770928,0.0381808373167472,0,-0.317025824643374,0.135952613269937,0,0.0381808373167472,0.00617980749263345,0.0381808373167472,-0.0542587050746794,-0.466217549772125,0.108506481031446,0.105704241097352,0.219235167404294,0.0461699027297702,0.000497123189103888,0.0164184702737862,0.31214269415645,0.164740603841292,0.0640126497821949,0.0652339922547354,0.0381808373167472,0.264007420550076,-0.480954449526223,0.229443011105477,-0.349120212133696,0.628152425799106,0.0833554168064562,-0.155340684585329,0.334760047114474,0.132829402879615,0.17724384753242,0.43004117760588,0.0381808373167472,0.397563536487192,0.175230353292894,0.0381808373167472,-0.0221037372826271,0.0381808373167472,-0.291988768408819,0,0.558507078017739,0.0557277152873943,-0.104550516359861,-0.301094425145374,-0.401108537263939,0.0188081659356403,0,-0.249023271008675,-0.526379531545936,0.0381808373167472,-0.117244923237486,0,1.03103902962554,-0.0770924900765979,0.405103004909443,-0.110461753862844,-0.00303684340925765,0,-0.248355888366746,0,0,-0.0644856995857185,0.282691972316779,0,-0.208381760445289,-0.200587634346076,-0.227926855207075,-0.0426964801768926,0,0,1.10354839558982,0.235923708291439,0.831830031683254,0.254341239022527,0.00966974812023974,1.23609349363122,0.433272911124175,-0.229729550476126,0.509130595826131,0,0,0.0618115603626909,0,0.259122567161299,0.0402938968639229,0,0.103904753992818,0,0,0,0.322785327280515,0.0312326997045742,0,0,0,0,0,0,0,-0.473294798755542,0.219990176673012,0.105743346346567,0.0758383578737163,0,0,0.0381808373167472,0.135952613269937,0.0381808373167472,0.0381808373167472,0.0365929008273309,0.0381808373167472,-0.515490474785947,0.117462316737286,-0.084836578359673,0.0557277152873943,0,0,0,0.222977619230679,0.100141794816162,0,0.032333804189112,0,0.0528716731732835,0,0.0732745932580414,0.153198336538655,0,0,0,0.0190904186583736,-0.0195496197369168,-0.231349716428525,0,0,0,0.401353688029102,0.0381808373167472,0,0,0.0053640306122341,-0.128977137602963,0,0,-0.328551816475494,0.0449561637782869,-0.290478264167593,0.134125539875049,0,0.193420115235571,-0.127949254842111,0.0912345521383606,0,0.0381808373167472,0.280377138233023,0,0.082098255343372,0.298196815929851,-0.0238139518182619,0.283063431570751,0.11472026571949,0.359176636688202,0,0.0190904186583736,0,0.135952613269937,0,-0.214314512399756,0.187645969798902,0.0732745932580414,0,0,0,0.21570741942189,0,0.303378356910885,0,0,0,-0.200423689219762,-0.0540432193417632,0,0,0,0.0381808373167472,0.176147105908767,0,0,0.680325358871092,0.246972141950537,0.0366372966290207,0,0,0,0,0.0381808373167472,0,0,0.239137383532586,0.3130818420957,0,0.0732745932580414,0,0,0.0389602520273319,0,0,0,0,0.272861702740991,0,0,-0.0866469120276698,0,0,0,0,0,0,0,0.00765050228192025,0,0,0,0,0,0.13843232019259,-0.28577611050984,0,0.0381808373167472,0,0,0,0,0,-0.0841180780402463,0,0.105743346346567,0,0,0.0220682395609598,0,0,0,0.44824358237584,0,-0.160318030086386,0.0381808373167472,0,0,0,0,0,0.0679763066349685,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0119300906537317,0.306975298095674,0,-0.28720751597291,-0.127609802125504,0,0,-0.0530400342889405,0,0,0,0,0,0,-0.031340424028527,0,0,0.634297507925242,0,0,0,0,0.0190904186583736,0,0,0,0,0,0,0,0,0,0,0.105743346346567,0,0,0,0,0,0,-0.0422775088265412,0,0,0,0,0,0,0,0.294795035622949,0,0,0.0439198034694109,0,0,0,0,0,0.00757939169368271,0.0193400806250454,-0.178606796559158,0.0518032542972705,0,0,0.0381808373167472,0.22764857816572,0,0,0.0253507988205853,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0.0732745932580414,0,0,0,0,0,0,0,0,0,0,0,0,0,0.105743346346567,0,0,0,0.101188674001746,0,0,0.0381808373167472,0,0.931222950566179,-0.11514217303168,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37628918598822,0,0,0,0,0.0381808373167472,0,0.164196510686744,0.0557277152873943,0,0,0.0381808373167472,0,0,0,0.100958565241239,0.164196510686744,0,0.831830031683254,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0190904186583736,0,0,0,0,0,0.279158168419564,0,0,0,-0.139811636399002,0,0,0,0,0,0,0.0381808373167472,0,0.135952613269937,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.652440345307007,0,0,0,0,0,0,0,0.0381808373167472,0,0,0,-0.241232356263651,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0575212711075125,0,0.0515759810399099,0,0,0,0,0,0.0732745932580414,0,0,0,0,0,0.0732745932580414,0,0,0,0,0.292926115246991,0,0,0,0,0.255741246249967,0,0,0,0,0,0,0,-0.0507912011728325,0,0,0,0,0,0,0,0,0,0,0.0190904186583736,0,0,0.276495224494364,0,0.0381808373167472,-0.262300763435561,0.0557277152873943,0,0,0,0,0,0,0,0,0,0,0,0.011954414107915,0,0,0,0,0,0,0.0732745932580414,0,0,0.0381808373167472,0.7466159738224,0,0.0190904186583736,0,0.322785327280515,0,0,0,0,0,0.819911539936576,0.105743346346567,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0190904186583736,-0.0851861681203809,-0.22631311524936,0,0.0381808373167472,0,0.105743346346567,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0381808373167472,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0190904186583736,0,0,0,0,0,0,0,0,0,0,0.0732745932580414,0.179588318344101,0,-0.354724076107398,0,0,0,0,0,0,0,0,0,0,0.135952613269937,0,0,0,0,0,0,0,0,0,0,0,0,0.50210897505132,0,0.0732745932580414,0,0,0,-0.0106065037143022,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0732745932580414,0,0,0,0,0,0,0,0,0,0.102598732502482,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.703495939016562,0,0,0,0,0,0,0,0,0,0,0,0,0.0381808373167472,0,0,0,0,0,0.0190904186583736,0,0,0,0,0,0,0,0,-0.167399638224927,0.0190904186583736,0,0.0557277152873943,0,0,0,0,0,0,0,0,0,0,0,0,0.105743346346567,0,0,0,0,0,0,0,0,0,0,0,0,0.0190904186583736,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0381808373167472,0,0.0528716731732835,0,0,0,0,0,0,0,0,0,0,0.164196510686744,0,0,0,0,0,0,0,0,0,0,0,0.934545918578019,0,0.0190904186583736,0,0,0,0,0.0732745932580414,0,0,0,0,0,0,0,0,0,0,0,0.0557277152873943,0,0,0.0381808373167472,0,0,0,0,0,0,0.0719620918316571,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0480362083041193,0.0381808373167472,0,0,0,0.0732745932580414,0,0.0184806582230488,-0.120599117657487,0.0381808373167472,0,0,0,0,0,0,0.0415005136897428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0190904186583736,0.0732745932580414,0,0.438701021784154,0.0679763066349685,0,1.19087476249875,0,0,0,0.0959298796463715,0,0,0,0,0.0190904186583736,0,0,0,0,0,0,0,0,0,0,0,0,0.00492071058063747,0,0,0.678308089630893,0,0,0,0,0,0,0.164196510686744,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0190904186583736,0,0,0,0.203321432905773,0,0,0,0,0,0,0,0,0,0,0,0,0.0190904186583736,0,0,0,0,0,-0.0591627898963497,0,0.095357610082922,0,0,0,0.082098255343372,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150106841791889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0190904186583736,0,0,0,0,0,0.00372210822941292,0,0.0732745932580414,0,0,0,0,0,0,0,0,0,0,0,-0.0133006858925657,0.0190904186583736,0,0,0,0,0,0,0,0,0,-0.0221596728694336,0.0190904186583736,0,0,0,0,0,0,0.0190904186583736,0,0,0,0,0,0,0,0,0,0,0.283005927897454,0,0.0557277152873943,-0.0422874684771159,0,-0.0806214120683702,0.103994949453431,0,0.392752931891006,0.328728457359468,0.452996780524677,0,0.0233600900837683,0,0,0,0,0,0,0,0.0190904186583736,0,0.105743346346567,0,0.135952613269937,0,0.0533767177419499,0,0,0,0,0,0,0.105743346346567,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.115875584636222,0,0.0869370823447357,-0.358893851205268,0,0,-0.00247241912343125,0.135952613269937,0.0809926591187149,0.228618525846372,0.0895089698023042,0,0.0157223250755452,-0.28110276557377,0,0,0,0,0.0732745932580414,0,0,0,0,0,0,0,0,0,0.0457793425021037,0.0381808373167472,0.21570741942189,0,0.107337564524145,-0.133523022324632,0.303378356910885,-0.0754578974395385,0,0.105743346346567,0.161234015675579,0,0,0,0.0399932058963501 | |||
|rna_box=108 | |rna_box=108 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 56: | Line 79: | ||
|rna_tube_id=108D8 | |rna_tube_id=108D8 | ||
|rna_weight_ug=102.42 | |rna_weight_ug=102.42 | ||
|rnaseq_library_id=RDhi10074 | |||
|sample_age=20 | |sample_age=20 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB0494 | |sample_cell_catalog=RCB0494 | ||
|sample_cell_line=NEC15 | |sample_cell_line=NEC15 | ||
| Line 69: | Line 94: | ||
|sample_ethnicity=J | |sample_ethnicity=J | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;5.90838310044129e-277!GO:0043226;organelle;9.43589748396035e-233!GO:0043229;intracellular organelle;3.70535338598316e-232!GO:0043227;membrane-bound organelle;1.14798592019189e-223!GO:0043231;intracellular membrane-bound organelle;1.18878522287798e-223!GO:0005737;cytoplasm;4.54656820422343e-145!GO:0005634;nucleus;1.73119121269773e-135!GO:0044422;organelle part;2.22080833138192e-131!GO:0044446;intracellular organelle part;6.13381821361498e-130!GO:0043170;macromolecule metabolic process;1.26738513278117e-112!GO:0044237;cellular metabolic process;2.59594206996756e-110!GO:0044238;primary metabolic process;7.88549465433649e-109!GO:0032991;macromolecular complex;1.06933391916289e-95!GO:0030529;ribonucleoprotein complex;2.18717238368819e-92!GO:0010467;gene expression;3.91036107282686e-91!GO:0003723;RNA binding;2.02152341119842e-88!GO:0044444;cytoplasmic part;3.81185432355741e-88!GO:0044428;nuclear part;3.17028746686838e-87!GO:0043283;biopolymer metabolic process;3.12983939912201e-85!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.69657398688095e-82!GO:0005515;protein binding;1.66885343048503e-77!GO:0043233;organelle lumen;7.95458457095955e-75!GO:0031974;membrane-enclosed lumen;7.95458457095955e-75!GO:0003676;nucleic acid binding;2.09507535786898e-67!GO:0006396;RNA processing;3.19204491497585e-59!GO:0016070;RNA metabolic process;2.76188173203308e-57!GO:0031981;nuclear lumen;2.16671743780056e-53!GO:0016043;cellular component organization and biogenesis;3.01992728628837e-53!GO:0006412;translation;3.753133851515e-52!GO:0005840;ribosome;4.24949269049933e-52!GO:0005739;mitochondrion;2.70953457003219e-48!GO:0016071;mRNA metabolic process;3.46497832012258e-47!GO:0043234;protein complex;1.60868093935628e-45!GO:0003735;structural constituent of ribosome;3.85439879896771e-45!GO:0008380;RNA splicing;2.51829490533803e-43!GO:0043228;non-membrane-bound organelle;3.88339918866092e-43!GO:0043232;intracellular non-membrane-bound organelle;3.88339918866092e-43!GO:0033036;macromolecule localization;2.19655197719126e-41!GO:0033279;ribosomal subunit;9.86756858197526e-41!GO:0015031;protein transport;3.67972417843911e-40!GO:0006397;mRNA processing;2.0963815099203e-38!GO:0019538;protein metabolic process;3.1194184908805e-38!GO:0006996;organelle organization and biogenesis;3.2698253517487e-38!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.40998368509418e-37!GO:0008104;protein localization;7.27708768943101e-36!GO:0045184;establishment of protein localization;8.71688523566919e-36!GO:0044249;cellular biosynthetic process;1.21156197725757e-35!GO:0044429;mitochondrial part;1.87032755230772e-35!GO:0044267;cellular protein metabolic process;1.11370812744729e-34!GO:0044260;cellular macromolecule metabolic process;2.76611148422613e-34!GO:0031967;organelle envelope;4.60681429587386e-34!GO:0031975;envelope;8.35520652822952e-34!GO:0046907;intracellular transport;1.15978365686437e-33!GO:0005829;cytosol;3.81688132956961e-33!GO:0031090;organelle membrane;1.23659487574763e-32!GO:0009059;macromolecule biosynthetic process;9.2831727192348e-32!GO:0005654;nucleoplasm;2.81267781614075e-31!GO:0000166;nucleotide binding;3.12288950598553e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.12820661757623e-30!GO:0009058;biosynthetic process;5.22303811508712e-30!GO:0005681;spliceosome;9.41295454493523e-30!GO:0065003;macromolecular complex assembly;1.13479876591758e-29!GO:0006259;DNA metabolic process;1.00151118984249e-28!GO:0022607;cellular component assembly;5.89378505131174e-28!GO:0006886;intracellular protein transport;8.64072708512672e-26!GO:0019222;regulation of metabolic process;1.7060375950348e-25!GO:0044451;nucleoplasm part;2.08603078744455e-25!GO:0005730;nucleolus;7.00602662215978e-25!GO:0050794;regulation of cellular process;1.06141268825309e-24!GO:0007049;cell cycle;1.16691897292584e-23!GO:0044445;cytosolic part;1.30858088847071e-23!GO:0051649;establishment of cellular localization;2.3487869636593e-23!GO:0019866;organelle inner membrane;7.56454025629799e-23!GO:0051641;cellular localization;8.83798771612175e-23!GO:0006119;oxidative phosphorylation;1.32545538077572e-22!GO:0022618;protein-RNA complex assembly;3.22700335737279e-22!GO:0031323;regulation of cellular metabolic process;3.22700335737279e-22!GO:0005740;mitochondrial envelope;1.0783454687149e-21!GO:0015935;small ribosomal subunit;1.19874388274452e-21!GO:0006350;transcription;4.84691283157846e-21!GO:0032553;ribonucleotide binding;6.11034967678385e-21!GO:0032555;purine ribonucleotide binding;6.11034967678385e-21!GO:0005743;mitochondrial inner membrane;1.1662839110927e-20!GO:0031966;mitochondrial membrane;3.31614266914071e-20!GO:0015934;large ribosomal subunit;3.5108686889819e-20!GO:0006512;ubiquitin cycle;3.77204513074424e-20!GO:0017076;purine nucleotide binding;9.30163818548289e-20!GO:0010468;regulation of gene expression;1.12627789076056e-19!GO:0016462;pyrophosphatase activity;2.50752497496811e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;2.92441877804519e-19!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.37582901137946e-19!GO:0006974;response to DNA damage stimulus;4.37582901137946e-19!GO:0044265;cellular macromolecule catabolic process;4.60850327401107e-19!GO:0050789;regulation of biological process;5.5459999593879e-19!GO:0017111;nucleoside-triphosphatase activity;5.99832263191925e-19!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.56912047072489e-19!GO:0044455;mitochondrial membrane part;1.33739789500084e-18!GO:0016874;ligase activity;1.36197213063595e-18!GO:0032774;RNA biosynthetic process;2.68841877997892e-18!GO:0006351;transcription, DNA-dependent;3.94938184134921e-18!GO:0008134;transcription factor binding;4.15659977679271e-18!GO:0051603;proteolysis involved in cellular protein catabolic process;7.99333081601846e-18!GO:0005524;ATP binding;1.17263124135127e-17!GO:0019941;modification-dependent protein catabolic process;1.27318615185663e-17!GO:0043632;modification-dependent macromolecule catabolic process;1.27318615185663e-17!GO:0044257;cellular protein catabolic process;2.06117305619507e-17!GO:0006457;protein folding;2.17489725707621e-17!GO:0006511;ubiquitin-dependent protein catabolic process;2.21481764251382e-17!GO:0032559;adenyl ribonucleotide binding;2.28805187903096e-17!GO:0008135;translation factor activity, nucleic acid binding;3.5498308474726e-17!GO:0043285;biopolymer catabolic process;3.75180790131145e-17!GO:0022402;cell cycle process;3.92796930160278e-17!GO:0005694;chromosome;5.98288254599331e-17!GO:0045449;regulation of transcription;2.85453240835844e-16!GO:0042254;ribosome biogenesis and assembly;3.91385215357512e-16!GO:0005746;mitochondrial respiratory chain;4.83407270281398e-16!GO:0030554;adenyl nucleotide binding;4.83407270281398e-16!GO:0031980;mitochondrial lumen;5.29808659697085e-16!GO:0005759;mitochondrial matrix;5.29808659697085e-16!GO:0009057;macromolecule catabolic process;9.61893271515953e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.44894586298653e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;3.00389923261539e-15!GO:0000375;RNA splicing, via transesterification reactions;3.00389923261539e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.00389923261539e-15!GO:0000278;mitotic cell cycle;3.10362164205443e-15!GO:0006355;regulation of transcription, DNA-dependent;3.44391200320664e-15!GO:0006281;DNA repair;7.3601128148946e-15!GO:0006366;transcription from RNA polymerase II promoter;8.08358986988369e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);9.02516375934492e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.16932703521497e-14!GO:0048770;pigment granule;1.37623318139341e-14!GO:0042470;melanosome;1.37623318139341e-14!GO:0016604;nuclear body;1.82044348041156e-14!GO:0050136;NADH dehydrogenase (quinone) activity;2.24638591168527e-14!GO:0003954;NADH dehydrogenase activity;2.24638591168527e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.24638591168527e-14!GO:0030163;protein catabolic process;2.95758977817472e-14!GO:0044427;chromosomal part;3.73339594767138e-14!GO:0005761;mitochondrial ribosome;6.23131874611823e-14!GO:0000313;organellar ribosome;6.23131874611823e-14!GO:0051276;chromosome organization and biogenesis;8.04753090800241e-14!GO:0043412;biopolymer modification;9.25155848358769e-14!GO:0006413;translational initiation;1.0425837014775e-13!GO:0006605;protein targeting;1.0425837014775e-13!GO:0003743;translation initiation factor activity;1.13460480335716e-13!GO:0051082;unfolded protein binding;1.55627958124038e-13!GO:0031965;nuclear membrane;1.58999256386457e-13!GO:0006403;RNA localization;2.39507334735582e-13!GO:0044248;cellular catabolic process;3.55503990340631e-13!GO:0003677;DNA binding;4.09639569982733e-13!GO:0005635;nuclear envelope;5.76491517372944e-13!GO:0042775;organelle ATP synthesis coupled electron transport;6.12318986208438e-13!GO:0042773;ATP synthesis coupled electron transport;6.12318986208438e-13!GO:0016607;nuclear speck;6.23557721987902e-13!GO:0050657;nucleic acid transport;7.51422970946974e-13!GO:0051236;establishment of RNA localization;7.51422970946974e-13!GO:0050658;RNA transport;7.51422970946974e-13!GO:0051301;cell division;9.87222054730543e-13!GO:0042623;ATPase activity, coupled;1.07903691969682e-12!GO:0004386;helicase activity;1.09646507831036e-12!GO:0016887;ATPase activity;1.16256622758293e-12!GO:0006446;regulation of translational initiation;1.16412702079051e-12!GO:0044453;nuclear membrane part;1.19321320585767e-12!GO:0022403;cell cycle phase;1.24662120405008e-12!GO:0006913;nucleocytoplasmic transport;1.26379937402372e-12!GO:0030964;NADH dehydrogenase complex (quinone);1.64471055659757e-12!GO:0045271;respiratory chain complex I;1.64471055659757e-12!GO:0005747;mitochondrial respiratory chain complex I;1.64471055659757e-12!GO:0043687;post-translational protein modification;2.28921475284925e-12!GO:0000087;M phase of mitotic cell cycle;3.12452355620043e-12!GO:0051169;nuclear transport;3.21868808812548e-12!GO:0003712;transcription cofactor activity;4.5728985583026e-12!GO:0007067;mitosis;5.11340884896955e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;5.17430430575998e-12!GO:0009719;response to endogenous stimulus;6.99434350429469e-12!GO:0012505;endomembrane system;8.17667738442666e-12!GO:0005643;nuclear pore;1.21312228481416e-11!GO:0006260;DNA replication;1.28537079113403e-11!GO:0065007;biological regulation;1.75826558546777e-11!GO:0000502;proteasome complex (sensu Eukaryota);1.80994101958007e-11!GO:0016192;vesicle-mediated transport;2.27023356034836e-11!GO:0006464;protein modification process;3.30045435154808e-11!GO:0008026;ATP-dependent helicase activity;3.55292679272959e-11!GO:0051028;mRNA transport;3.80968012681674e-11!GO:0006364;rRNA processing;4.04544602254809e-11!GO:0016072;rRNA metabolic process;5.68139103388049e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.90365233528516e-11!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;6.44785786126202e-11!GO:0006399;tRNA metabolic process;7.37584584036849e-11!GO:0065002;intracellular protein transport across a membrane;9.79543591047708e-11!GO:0006325;establishment and/or maintenance of chromatin architecture;1.35316266736978e-10!GO:0048193;Golgi vesicle transport;1.68975686938531e-10!GO:0000279;M phase;1.86441248296881e-10!GO:0006323;DNA packaging;5.009765758985e-10!GO:0005794;Golgi apparatus;6.46776488760109e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;6.70369728428737e-10!GO:0012501;programmed cell death;1.26288235211644e-09!GO:0006915;apoptosis;1.70561646952686e-09!GO:0008565;protein transporter activity;1.78704110577857e-09!GO:0015630;microtubule cytoskeleton;2.27422268799759e-09!GO:0051186;cofactor metabolic process;2.80829422853558e-09!GO:0008639;small protein conjugating enzyme activity;2.87384032728407e-09!GO:0016568;chromatin modification;3.22081725712252e-09!GO:0046930;pore complex;3.92250175834786e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.12579636119215e-09!GO:0004812;aminoacyl-tRNA ligase activity;4.12579636119215e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.12579636119215e-09!GO:0015986;ATP synthesis coupled proton transport;4.7168549426611e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.7168549426611e-09!GO:0006732;coenzyme metabolic process;4.79756480707797e-09!GO:0004842;ubiquitin-protein ligase activity;4.98596998192251e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;5.70947216342713e-09!GO:0006461;protein complex assembly;5.94589093216681e-09!GO:0030532;small nuclear ribonucleoprotein complex;5.94589093216681e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.15632820143093e-08!GO:0043038;amino acid activation;1.25468556285405e-08!GO:0006418;tRNA aminoacylation for protein translation;1.25468556285405e-08!GO:0043039;tRNA aminoacylation;1.25468556285405e-08!GO:0019787;small conjugating protein ligase activity;1.35299315687144e-08!GO:0000074;regulation of progression through cell cycle;1.53236852329676e-08!GO:0051726;regulation of cell cycle;1.57569872133291e-08!GO:0008270;zinc ion binding;2.09089521140464e-08!GO:0043566;structure-specific DNA binding;2.36252627018708e-08!GO:0006357;regulation of transcription from RNA polymerase II promoter;2.81710156163828e-08!GO:0008219;cell death;3.01882499794922e-08!GO:0016265;death;3.01882499794922e-08!GO:0006793;phosphorus metabolic process;3.39808409230536e-08!GO:0006796;phosphate metabolic process;3.39808409230536e-08!GO:0017038;protein import;3.47855639038891e-08!GO:0006163;purine nucleotide metabolic process;3.7986194763131e-08!GO:0000245;spliceosome assembly;4.02343672290803e-08!GO:0019829;cation-transporting ATPase activity;4.22675845536459e-08!GO:0009259;ribonucleotide metabolic process;4.44226952383834e-08!GO:0006164;purine nucleotide biosynthetic process;5.24309174969407e-08!GO:0016564;transcription repressor activity;6.94679880881908e-08!GO:0009055;electron carrier activity;8.38552235918196e-08!GO:0003697;single-stranded DNA binding;1.05517727992879e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.23949173276842e-07!GO:0003724;RNA helicase activity;1.32056811841016e-07!GO:0006754;ATP biosynthetic process;1.42001900583032e-07!GO:0006753;nucleoside phosphate metabolic process;1.42001900583032e-07!GO:0016469;proton-transporting two-sector ATPase complex;1.49978154737822e-07!GO:0009150;purine ribonucleotide metabolic process;1.70013709196195e-07!GO:0007010;cytoskeleton organization and biogenesis;1.72522882600595e-07!GO:0009260;ribonucleotide biosynthetic process;1.79369607097736e-07!GO:0015078;hydrogen ion transmembrane transporter activity;2.3508348689744e-07!GO:0009152;purine ribonucleotide biosynthetic process;2.36004798785812e-07!GO:0000785;chromatin;2.42313529055971e-07!GO:0009142;nucleoside triphosphate biosynthetic process;2.65172118851525e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.65172118851525e-07!GO:0005793;ER-Golgi intermediate compartment;4.25451377368938e-07!GO:0031324;negative regulation of cellular metabolic process;4.63329946537274e-07!GO:0051246;regulation of protein metabolic process;4.81115963387549e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;5.15398716990859e-07!GO:0005667;transcription factor complex;5.42384547248893e-07!GO:0009199;ribonucleoside triphosphate metabolic process;5.86379109337271e-07!GO:0046034;ATP metabolic process;5.86379109337271e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;6.08218752443823e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;6.08218752443823e-07!GO:0016881;acid-amino acid ligase activity;6.77502014166123e-07!GO:0016779;nucleotidyltransferase activity;7.34193733835025e-07!GO:0009060;aerobic respiration;7.35434293205767e-07!GO:0016310;phosphorylation;7.85758421543454e-07!GO:0005768;endosome;1.04894059904807e-06!GO:0045333;cellular respiration;1.1407774930109e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.26389869842995e-06!GO:0009144;purine nucleoside triphosphate metabolic process;1.26389869842995e-06!GO:0043623;cellular protein complex assembly;1.427842369573e-06!GO:0003714;transcription corepressor activity;1.5303251522842e-06!GO:0048475;coated membrane;1.5565884702702e-06!GO:0030117;membrane coat;1.5565884702702e-06!GO:0009056;catabolic process;1.73106164452425e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.79629714822257e-06!GO:0006752;group transfer coenzyme metabolic process;1.79629714822257e-06!GO:0032446;protein modification by small protein conjugation;1.83742304142172e-06!GO:0009108;coenzyme biosynthetic process;1.879449316363e-06!GO:0051168;nuclear export;1.89147020231263e-06!GO:0009141;nucleoside triphosphate metabolic process;1.90343489711156e-06!GO:0045259;proton-transporting ATP synthase complex;2.39212728605801e-06!GO:0006261;DNA-dependent DNA replication;2.67658947247646e-06!GO:0051170;nuclear import;2.78751234295658e-06!GO:0048523;negative regulation of cellular process;2.82805445584423e-06!GO:0051188;cofactor biosynthetic process;4.13810188878057e-06!GO:0008186;RNA-dependent ATPase activity;4.58674399923571e-06!GO:0016567;protein ubiquitination;4.81049324160084e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;5.01302389109557e-06!GO:0009892;negative regulation of metabolic process;5.29220220162656e-06!GO:0003899;DNA-directed RNA polymerase activity;5.48231132070837e-06!GO:0006099;tricarboxylic acid cycle;6.06502115165748e-06!GO:0046356;acetyl-CoA catabolic process;6.06502115165748e-06!GO:0016740;transferase activity;6.70602611672438e-06!GO:0006402;mRNA catabolic process;7.43692034509668e-06!GO:0006606;protein import into nucleus;7.58482428470793e-06!GO:0000314;organellar small ribosomal subunit;7.93358868092225e-06!GO:0005763;mitochondrial small ribosomal subunit;7.93358868092225e-06!GO:0006888;ER to Golgi vesicle-mediated transport;8.5086342495186e-06!GO:0005783;endoplasmic reticulum;8.71327639320691e-06!GO:0005525;GTP binding;8.87181766996799e-06!GO:0031252;leading edge;9.6028592058595e-06!GO:0030120;vesicle coat;1.12465090423838e-05!GO:0030662;coated vesicle membrane;1.12465090423838e-05!GO:0006084;acetyl-CoA metabolic process;1.194520184199e-05!GO:0003713;transcription coactivator activity;1.34840027507892e-05!GO:0003690;double-stranded DNA binding;1.3536446667498e-05!GO:0004004;ATP-dependent RNA helicase activity;1.37754719187667e-05!GO:0000151;ubiquitin ligase complex;1.43508583587219e-05!GO:0016563;transcription activator activity;1.44000670906711e-05!GO:0042981;regulation of apoptosis;1.62717143334353e-05!GO:0043069;negative regulation of programmed cell death;1.69576568006927e-05!GO:0031988;membrane-bound vesicle;1.79309812449601e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.80308886074991e-05!GO:0043066;negative regulation of apoptosis;1.87676359118215e-05!GO:0043067;regulation of programmed cell death;1.92149345588258e-05!GO:0007017;microtubule-based process;1.92750752518751e-05!GO:0016363;nuclear matrix;2.02957328220892e-05!GO:0048519;negative regulation of biological process;2.3474139504981e-05!GO:0003729;mRNA binding;2.43248487687166e-05!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.43767812645348e-05!GO:0006613;cotranslational protein targeting to membrane;2.48422489780128e-05!GO:0007005;mitochondrion organization and biogenesis;2.4913286128509e-05!GO:0005813;centrosome;2.91298245996492e-05!GO:0016023;cytoplasmic membrane-bound vesicle;2.92902869283454e-05!GO:0000775;chromosome, pericentric region;3.02286087938624e-05!GO:0065004;protein-DNA complex assembly;3.08000242696669e-05!GO:0003924;GTPase activity;3.15662505903177e-05!GO:0016481;negative regulation of transcription;3.3107239823615e-05!GO:0007264;small GTPase mediated signal transduction;3.40888242698119e-05!GO:0005819;spindle;4.30498303758072e-05!GO:0006401;RNA catabolic process;4.58539421787367e-05!GO:0031982;vesicle;4.81217753645695e-05!GO:0009109;coenzyme catabolic process;4.90728660824682e-05!GO:0005874;microtubule;5.50396911535202e-05!GO:0044452;nucleolar part;6.05513412208886e-05!GO:0032561;guanyl ribonucleotide binding;6.20337396150724e-05!GO:0019001;guanyl nucleotide binding;6.20337396150724e-05!GO:0051427;hormone receptor binding;6.53967133345496e-05!GO:0005770;late endosome;6.64476539489777e-05!GO:0007051;spindle organization and biogenesis;7.20622923496136e-05!GO:0031410;cytoplasmic vesicle;8.39255008521495e-05!GO:0009117;nucleotide metabolic process;8.65053148026141e-05!GO:0044432;endoplasmic reticulum part;9.05148006021728e-05!GO:0051187;cofactor catabolic process;9.05148006021728e-05!GO:0005762;mitochondrial large ribosomal subunit;9.58232111995551e-05!GO:0000315;organellar large ribosomal subunit;9.58232111995551e-05!GO:0006916;anti-apoptosis;0.000101403566850672!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000106455944458155!GO:0019899;enzyme binding;0.000122864291766227!GO:0043021;ribonucleoprotein binding;0.000128005711428537!GO:0046914;transition metal ion binding;0.000130208970783526!GO:0005815;microtubule organizing center;0.000134907340989737!GO:0035257;nuclear hormone receptor binding;0.00013513481191286!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000137648176573854!GO:0005769;early endosome;0.000140839368098897!GO:0006612;protein targeting to membrane;0.000162056181890913!GO:0006383;transcription from RNA polymerase III promoter;0.000167814535014408!GO:0044431;Golgi apparatus part;0.0001785537939629!GO:0043681;protein import into mitochondrion;0.000214535589694715!GO:0006818;hydrogen transport;0.000233329214766901!GO:0005657;replication fork;0.00023858735749096!GO:0048471;perinuclear region of cytoplasm;0.000240055900152775!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00028500162396549!GO:0000059;protein import into nucleus, docking;0.000297787099812479!GO:0015992;proton transport;0.000316708025430627!GO:0006333;chromatin assembly or disassembly;0.000329585414018761!GO:0016251;general RNA polymerase II transcription factor activity;0.000331949968608372!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000333992858127886!GO:0000075;cell cycle checkpoint;0.000364876557588003!GO:0044440;endosomal part;0.0003688978061564!GO:0010008;endosome membrane;0.0003688978061564!GO:0000776;kinetochore;0.000375309511326807!GO:0051087;chaperone binding;0.000380076854579629!GO:0000049;tRNA binding;0.000455153989442088!GO:0051052;regulation of DNA metabolic process;0.000455153989442088!GO:0008092;cytoskeletal protein binding;0.00045759959406965!GO:0051789;response to protein stimulus;0.000458489321245938!GO:0006986;response to unfolded protein;0.000458489321245938!GO:0045892;negative regulation of transcription, DNA-dependent;0.000498750159788219!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000547874943005825!GO:0006352;transcription initiation;0.000549772779781694!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000553824220701129!GO:0031072;heat shock protein binding;0.000554910666199807!GO:0007059;chromosome segregation;0.000557272632922734!GO:0030880;RNA polymerase complex;0.000576511497365051!GO:0006414;translational elongation;0.000585950692019902!GO:0045454;cell redox homeostasis;0.000586463907951045!GO:0015631;tubulin binding;0.000593549263716286!GO:0006405;RNA export from nucleus;0.000604239350492314!GO:0051325;interphase;0.000635717311146889!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000652626090427724!GO:0004674;protein serine/threonine kinase activity;0.000661375688629566!GO:0048487;beta-tubulin binding;0.000671111391977421!GO:0006302;double-strand break repair;0.000697694088029649!GO:0051329;interphase of mitotic cell cycle;0.000735992573435678!GO:0000139;Golgi membrane;0.000744224378420929!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.000758715537770528!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000828229549683554!GO:0016853;isomerase activity;0.000908458494109969!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000921698163222818!GO:0000428;DNA-directed RNA polymerase complex;0.000921698163222818!GO:0008094;DNA-dependent ATPase activity;0.000943970936522831!GO:0005839;proteasome core complex (sensu Eukaryota);0.000952293899230274!GO:0042802;identical protein binding;0.000952293899230274!GO:0008033;tRNA processing;0.000954555340330957!GO:0003682;chromatin binding;0.000954555340330957!GO:0003702;RNA polymerase II transcription factor activity;0.00096198143766372!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.00102147068463406!GO:0007006;mitochondrial membrane organization and biogenesis;0.00104763860209153!GO:0051920;peroxiredoxin activity;0.00106214595751385!GO:0016044;membrane organization and biogenesis;0.0011448361757615!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00120920943384672!GO:0015399;primary active transmembrane transporter activity;0.00120920943384672!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.00124622118866932!GO:0051252;regulation of RNA metabolic process;0.0013183016054307!GO:0030867;rough endoplasmic reticulum membrane;0.00137660954900345!GO:0006611;protein export from nucleus;0.00140902202572492!GO:0030036;actin cytoskeleton organization and biogenesis;0.00145045514545447!GO:0006520;amino acid metabolic process;0.00147692781837566!GO:0019783;small conjugating protein-specific protease activity;0.00158834075046826!GO:0008250;oligosaccharyl transferase complex;0.00160687737554731!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00168513254437171!GO:0005684;U2-dependent spliceosome;0.00170100311236525!GO:0043414;biopolymer methylation;0.00175978415062586!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.00181000424974898!GO:0045786;negative regulation of progression through cell cycle;0.00200080580760045!GO:0004298;threonine endopeptidase activity;0.00201908917012459!GO:0008139;nuclear localization sequence binding;0.00234341717268196!GO:0007052;mitotic spindle organization and biogenesis;0.00235953952409248!GO:0015980;energy derivation by oxidation of organic compounds;0.0024981793992736!GO:0005637;nuclear inner membrane;0.00254130339224538!GO:0016272;prefoldin complex;0.00254130339224538!GO:0035258;steroid hormone receptor binding;0.00260208661937413!GO:0032259;methylation;0.00261748022911654!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00262890476779732!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00264389704560361!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00264389704560361!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00264389704560361!GO:0005798;Golgi-associated vesicle;0.00264420165282977!GO:0030029;actin filament-based process;0.00273713190257142!GO:0032508;DNA duplex unwinding;0.0027457131524448!GO:0032392;DNA geometric change;0.0027457131524448!GO:0022890;inorganic cation transmembrane transporter activity;0.00277174954084589!GO:0006338;chromatin remodeling;0.00280357627859334!GO:0030118;clathrin coat;0.00286834909545553!GO:0000792;heterochromatin;0.00288109071584455!GO:0005048;signal sequence binding;0.00289387159911708!GO:0004843;ubiquitin-specific protease activity;0.00291358744336671!GO:0040029;regulation of gene expression, epigenetic;0.00302128647355094!GO:0042175;nuclear envelope-endoplasmic reticulum network;0.00310177101687014!GO:0007093;mitotic cell cycle checkpoint;0.00342993605105498!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00343908083396896!GO:0030027;lamellipodium;0.00348617808844008!GO:0003678;DNA helicase activity;0.00352211314955535!GO:0048500;signal recognition particle;0.00358305968762056!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00359465377564062!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00359465377564062!GO:0007021;tubulin folding;0.00373479348631317!GO:0005789;endoplasmic reticulum membrane;0.00384910356617322!GO:0008168;methyltransferase activity;0.00400040855401079!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00409227062959235!GO:0016741;transferase activity, transferring one-carbon groups;0.00409227062959235!GO:0001726;ruffle;0.00411838586516468!GO:0030521;androgen receptor signaling pathway;0.00412522928530564!GO:0000228;nuclear chromosome;0.00412522928530564!GO:0006417;regulation of translation;0.00412522928530564!GO:0006626;protein targeting to mitochondrion;0.00422901781676684!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00433525967938393!GO:0004221;ubiquitin thiolesterase activity;0.00456160466730289!GO:0005885;Arp2/3 protein complex;0.00457051988771719!GO:0030658;transport vesicle membrane;0.00459117952583512!GO:0033116;ER-Golgi intermediate compartment membrane;0.00466714799433738!GO:0006268;DNA unwinding during replication;0.00466714799433738!GO:0007088;regulation of mitosis;0.00485793805929332!GO:0016790;thiolester hydrolase activity;0.00485793805929332!GO:0045045;secretory pathway;0.00487887501044048!GO:0008654;phospholipid biosynthetic process;0.0050623044094623!GO:0005788;endoplasmic reticulum lumen;0.0050623044094623!GO:0004576;oligosaccharyl transferase activity;0.00520712283741928!GO:0009165;nucleotide biosynthetic process;0.00521610434808465!GO:0016859;cis-trans isomerase activity;0.00531543901349095!GO:0032200;telomere organization and biogenesis;0.00539260108200725!GO:0000723;telomere maintenance;0.00539260108200725!GO:0043022;ribosome binding;0.00541311652419277!GO:0005669;transcription factor TFIID complex;0.00548143655173336!GO:0008652;amino acid biosynthetic process;0.00563584958731516!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00574115555350343!GO:0031124;mRNA 3'-end processing;0.00637968885472697!GO:0001701;in utero embryonic development;0.00644795961314082!GO:0007243;protein kinase cascade;0.00644795961314082!GO:0000096;sulfur amino acid metabolic process;0.00665068321616087!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00675615675933132!GO:0004527;exonuclease activity;0.00730825418831491!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00731736951625493!GO:0006376;mRNA splice site selection;0.00732099663655669!GO:0000389;nuclear mRNA 3'-splice site recognition;0.00732099663655669!GO:0030518;steroid hormone receptor signaling pathway;0.00736876553412205!GO:0006730;one-carbon compound metabolic process;0.00746739029114122!GO:0006541;glutamine metabolic process;0.00780177509500051!GO:0008629;induction of apoptosis by intracellular signals;0.00786779201352949!GO:0009112;nucleobase metabolic process;0.00796833047634725!GO:0030134;ER to Golgi transport vesicle;0.00804741010149573!GO:0030032;lamellipodium biogenesis;0.00809624138932292!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00813979376782083!GO:0042026;protein refolding;0.00825789899764174!GO:0043492;ATPase activity, coupled to movement of substances;0.00841969580545665!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00863040459672668!GO:0045047;protein targeting to ER;0.00863040459672668!GO:0043488;regulation of mRNA stability;0.00869688424114985!GO:0043487;regulation of RNA stability;0.00869688424114985!GO:0016197;endosome transport;0.0087473936095062!GO:0030031;cell projection biogenesis;0.00914802901024984!GO:0006144;purine base metabolic process;0.00950949250165692!GO:0008312;7S RNA binding;0.00992563994235154!GO:0045893;positive regulation of transcription, DNA-dependent;0.0101423937532428!GO:0030132;clathrin coat of coated pit;0.0102871897568506!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0103755802860512!GO:0000339;RNA cap binding;0.0105143152666525!GO:0065009;regulation of a molecular function;0.0106273571757073!GO:0005832;chaperonin-containing T-complex;0.0106913912104315!GO:0044454;nuclear chromosome part;0.0107033588520253!GO:0018196;peptidyl-asparagine modification;0.0111492333168821!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0111492333168821!GO:0006310;DNA recombination;0.011264069027109!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0113320849781156!GO:0006275;regulation of DNA replication;0.0122374878036084!GO:0003711;transcription elongation regulator activity;0.0122771210872973!GO:0007004;telomere maintenance via telomerase;0.0124795167392143!GO:0000725;recombinational repair;0.0124795167392143!GO:0000724;double-strand break repair via homologous recombination;0.0124795167392143!GO:0042770;DNA damage response, signal transduction;0.0131085722658463!GO:0045941;positive regulation of transcription;0.0138517272300962!GO:0006839;mitochondrial transport;0.0138817161369435!GO:0048468;cell development;0.013940451435873!GO:0030660;Golgi-associated vesicle membrane;0.0141408784334499!GO:0006306;DNA methylation;0.0141408784334499!GO:0006305;DNA alkylation;0.0141408784334499!GO:0030119;AP-type membrane coat adaptor complex;0.0143161244550879!GO:0030127;COPII vesicle coat;0.0143161244550879!GO:0012507;ER to Golgi transport vesicle membrane;0.0143161244550879!GO:0005905;coated pit;0.0143161244550879!GO:0005850;eukaryotic translation initiation factor 2 complex;0.01437286363165!GO:0000097;sulfur amino acid biosynthetic process;0.014646591327349!GO:0003684;damaged DNA binding;0.0147919188573904!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0151088960958366!GO:0003746;translation elongation factor activity;0.0153453136764104!GO:0005791;rough endoplasmic reticulum;0.0166233398886686!GO:0008276;protein methyltransferase activity;0.0167231548861062!GO:0031123;RNA 3'-end processing;0.0168952469216943!GO:0046870;cadmium ion binding;0.0169407108476092!GO:0008017;microtubule binding;0.0170156713274003!GO:0019843;rRNA binding;0.0184680905916512!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0189370497916972!GO:0016301;kinase activity;0.0189779920002656!GO:0051287;NAD binding;0.019124186501948!GO:0046983;protein dimerization activity;0.0195072910570851!GO:0000082;G1/S transition of mitotic cell cycle;0.0195243792520875!GO:0031625;ubiquitin protein ligase binding;0.0201412584088595!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0201412584088595!GO:0000178;exosome (RNase complex);0.0201872063144516!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0205642492894344!GO:0006406;mRNA export from nucleus;0.0208957363175622!GO:0000781;chromosome, telomeric region;0.0217540541855106!GO:0030131;clathrin adaptor complex;0.021762594679151!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0219356268278164!GO:0008022;protein C-terminus binding;0.0220050161509498!GO:0031326;regulation of cellular biosynthetic process;0.0224487749303722!GO:0016791;phosphoric monoester hydrolase activity;0.0228703970528798!GO:0016311;dephosphorylation;0.0229751807750593!GO:0006278;RNA-dependent DNA replication;0.0233172032950362!GO:0016584;nucleosome positioning;0.0233172032950362!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.023645901686056!GO:0015002;heme-copper terminal oxidase activity;0.023645901686056!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.023645901686056!GO:0004129;cytochrome-c oxidase activity;0.023645901686056!GO:0000793;condensed chromosome;0.0237180826867403!GO:0033673;negative regulation of kinase activity;0.0239142173183676!GO:0006469;negative regulation of protein kinase activity;0.0239142173183676!GO:0043596;nuclear replication fork;0.0241364229327938!GO:0051101;regulation of DNA binding;0.0243363326455485!GO:0043433;negative regulation of transcription factor activity;0.0245772624727335!GO:0051348;negative regulation of transferase activity;0.0247518528095638!GO:0016787;hydrolase activity;0.0248579526279243!GO:0031529;ruffle organization and biogenesis;0.0254546079005191!GO:0042393;histone binding;0.0260652049596217!GO:0008287;protein serine/threonine phosphatase complex;0.0263176291187493!GO:0006400;tRNA modification;0.0263951065123537!GO:0006284;base-excision repair;0.0264585674750665!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0265000909272032!GO:0008408;3'-5' exonuclease activity;0.0266701414556711!GO:0012506;vesicle membrane;0.0275233007739646!GO:0044433;cytoplasmic vesicle part;0.0275405683805298!GO:0007265;Ras protein signal transduction;0.0277271670405565!GO:0030133;transport vesicle;0.0297771382782195!GO:0030659;cytoplasmic vesicle membrane;0.0299016356305826!GO:0006892;post-Golgi vesicle-mediated transport;0.0301272002770211!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0303740102680762!GO:0008632;apoptotic program;0.0308264086938112!GO:0005774;vacuolar membrane;0.0309523137582135!GO:0009066;aspartate family amino acid metabolic process;0.0310636235437751!GO:0000152;nuclear ubiquitin ligase complex;0.0313316578147149!GO:0050811;GABA receptor binding;0.0313617344215863!GO:0031901;early endosome membrane;0.0316812826859902!GO:0005773;vacuole;0.0318617455956383!GO:0051098;regulation of binding;0.0318756444588132!GO:0009451;RNA modification;0.0330293201686373!GO:0030125;clathrin vesicle coat;0.0341356090792669!GO:0030665;clathrin coated vesicle membrane;0.0341356090792669!GO:0005758;mitochondrial intermembrane space;0.0345329231975493!GO:0006509;membrane protein ectodomain proteolysis;0.0345329231975493!GO:0033619;membrane protein proteolysis;0.0345329231975493!GO:0006301;postreplication repair;0.0355259308021748!GO:0006378;mRNA polyadenylation;0.0355497455545132!GO:0050662;coenzyme binding;0.0355497455545132!GO:0016601;Rac protein signal transduction;0.0355497455545132!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0355497455545132!GO:0045039;protein import into mitochondrial inner membrane;0.0355497455545132!GO:0008361;regulation of cell size;0.0362031232592093!GO:0006304;DNA modification;0.0363433450409693!GO:0030522;intracellular receptor-mediated signaling pathway;0.0363624739259272!GO:0008234;cysteine-type peptidase activity;0.0369852658657654!GO:0006007;glucose catabolic process;0.0369852658657654!GO:0030663;COPI coated vesicle membrane;0.0372188573948009!GO:0030126;COPI vesicle coat;0.0372188573948009!GO:0005784;translocon complex;0.0372188573948009!GO:0050178;phenylpyruvate tautomerase activity;0.0374103481350407!GO:0008097;5S rRNA binding;0.0384121782642917!GO:0000790;nuclear chromatin;0.0385364713916584!GO:0051053;negative regulation of DNA metabolic process;0.0392827638549525!GO:0007094;mitotic cell cycle spindle assembly checkpoint;0.039316704700419!GO:0004532;exoribonuclease activity;0.0393498987108539!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0393498987108539!GO:0050681;androgen receptor binding;0.0394398464889711!GO:0051656;establishment of organelle localization;0.0397473252636374!GO:0050749;apolipoprotein E receptor binding;0.0400576798766844!GO:0046426;negative regulation of JAK-STAT cascade;0.0403116587099736!GO:0004003;ATP-dependent DNA helicase activity;0.0406606399607383!GO:0031497;chromatin assembly;0.0411111143592467!GO:0006519;amino acid and derivative metabolic process;0.0417257594585885!GO:0009889;regulation of biosynthetic process;0.0430576006515284!GO:0009303;rRNA transcription;0.0432285379079063!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0434700474825405!GO:0008286;insulin receptor signaling pathway;0.0435235035003438!GO:0006984;ER-nuclear signaling pathway;0.043791099681963!GO:0005083;small GTPase regulator activity;0.0439104280412112!GO:0045947;negative regulation of translational initiation;0.0449466491339319!GO:0006289;nucleotide-excision repair;0.0453790238322739!GO:0031577;spindle checkpoint;0.0454256674449144!GO:0045737;positive regulation of cyclin-dependent protein kinase activity;0.0463977602457383!GO:0043624;cellular protein complex disassembly;0.0463977602457383!GO:0000062;acyl-CoA binding;0.0463977602457383!GO:0032981;mitochondrial respiratory chain complex I assembly;0.047386714462043!GO:0010257;NADH dehydrogenase complex assembly;0.047386714462043!GO:0033108;mitochondrial respiratory chain complex assembly;0.047386714462043!GO:0005856;cytoskeleton;0.047386714462043!GO:0007025;beta-tubulin folding;0.0475440541544703!GO:0006897;endocytosis;0.0475440541544703!GO:0010324;membrane invagination;0.0475440541544703!GO:0046488;phosphatidylinositol metabolic process;0.0477995817374253!GO:0006595;polyamine metabolic process;0.0478838234393313!GO:0017166;vinculin binding;0.0483521294919814!GO:0005938;cell cortex;0.048498510605209!GO:0005844;polysome;0.0487709289365835 | |||
|sample_id=10593 | |sample_id=10593 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 102: | ||
|sample_tissue=testis | |sample_tissue=testis | ||
|top_motifs=OCT4_SOX2{dimer}:3.56068307166;bHLH_family:1.9493681649;TP53:1.88128485793;STAT1,3:1.75301395896;SNAI1..3:1.59097311849;NKX2-3_NKX2-5:1.46327795477;MYOD1:1.42838913823;XCPE1{core}:1.37443948952;CUX2:1.34804887517;TOPORS:1.27737718048;ZEB1:1.26425372882;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.24992690641;SP1:1.22130237533;SREBF1,2:1.18118898111;PATZ1:1.11340499721;PITX1..3:1.10132004395;MTF1:1.04461402359;TFAP2{A,C}:1.02546210018;ONECUT1,2:0.991054658472;NRF1:0.970251937648;RORA:0.955560187804;LEF1_TCF7_TCF7L1,2:0.94825766056;MAZ:0.942451578888;NFY{A,B,C}:0.890100090752;PAX2:0.888562268643;SOX2:0.850609146901;TBX4,5:0.823817728314;STAT5{A,B}:0.761486170838;ZNF143:0.742698865576;VSX1,2:0.689390254441;HIF1A:0.672272653459;ELK1,4_GABP{A,B1}:0.598930322855;LMO2:0.595882435555;RBPJ:0.586120563519;FOXN1:0.579715432065;ESRRA:0.567421712254;ATF4:0.54178685191;IKZF2:0.506792386864;TFAP2B:0.504722261145;FOXM1:0.480269381063;PAX8:0.475814775246;E2F1..5:0.475506668986;ALX1:0.44113080362;PAX1,9:0.440070281537;TEAD1:0.439551367156;MZF1:0.414051432529;SOX17:0.39607954821;GFI1:0.393184208559;TFDP1:0.384600131111;GTF2I:0.363524809997;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.340346987031;FOXQ1:0.329807075879;SOX{8,9,10}:0.320538204569;HSF1,2:0.284712443067;ZBTB16:0.270355188051;MYB:0.267050720077;POU5F1:0.245483839283;ZFP161:0.230773227286;FOX{F1,F2,J1}:0.201951578807;EGR1..3:0.200621987836;BREu{core}:0.199231151919;FOXP1:0.194845261738;EBF1:0.185860408227;CDX1,2,4:0.177322601746;TLX2:0.15560480819;ZNF384:0.133533930748;CDC5L:0.112696857267;RREB1:0.111822948509;ATF5_CREB3:0.0855566051543;HNF4A_NR2F1,2:0.0787095770348;NKX6-1,2:0.06404215009;GZF1:0.0512549305056;FOXD3:0.0124209723512;PRRX1,2:0.00884470640299;GATA6:0.00790462977337;POU2F1..3:-0.00810695593372;ADNP_IRX_SIX_ZHX:-0.0215550358257;ZBTB6:-0.038648762649;MED-1{core}:-0.0549693507103;TBP:-0.0806637282628;YY1:-0.0970193377142;NFE2L2:-0.121190903351;NANOG:-0.146563133945;CRX:-0.153743280474;ZNF148:-0.166611005299;CREB1:-0.174986614859;AIRE:-0.187702609909;FOS_FOS{B,L1}_JUN{B,D}:-0.195897089745;FOSL2:-0.200479631804;HNF1A:-0.222336488463;NFIX:-0.22884033212;EVI1:-0.244514674749;PRDM1:-0.248256132074;PBX1:-0.252261809739;KLF4:-0.255460569356;AHR_ARNT_ARNT2:-0.256283059534;NHLH1,2:-0.257458825531;REST:-0.264626077724;EP300:-0.26771481251;HOX{A4,D4}:-0.278241786189;BACH2:-0.279405594309;NKX2-1,4:-0.318742024244;NFE2:-0.329009453679;ZIC1..3:-0.340766404149;MYFfamily:-0.354343616202;ATF2:-0.377295819615;NFKB1_REL_RELA:-0.388320756125;TFCP2:-0.391648553158;T:-0.423007322986;UFEwm:-0.430716364262;HMX1:-0.439548597572;AR:-0.441066440204;MAFB:-0.442629080218;HOX{A5,B5}:-0.447295166547;NR5A1,2:-0.447915511762;FOXO1,3,4:-0.458442526383;POU1F1:-0.47615841823;CEBPA,B_DDIT3:-0.485562775923;SPZ1:-0.48672921735;FOXP3:-0.487513026745;TEF:-0.487896052744;HLF:-0.49112977273;SPI1:-0.502325485006;GATA4:-0.522409849995;HOX{A6,A7,B6,B7}:-0.529449384305;FOXA2:-0.543210880993;GCM1,2:-0.544603349346;ZNF423:-0.546719967595;LHX3,4:-0.580563259598;MYBL2:-0.5867960301;TFAP4:-0.601245179599;ARID5B:-0.604209807252;ETS1,2:-0.60451559583;FOX{D1,D2}:-0.634577151622;SPIB:-0.635473653499;RFX1:-0.67187892183;RFX2..5_RFXANK_RFXAP:-0.677671109053;MTE{core}:-0.696587122114;NKX3-2:-0.715773700675;MEF2{A,B,C,D}:-0.718408296105;PAX5:-0.718941197635;GFI1B:-0.719221690609;FOX{I1,J2}:-0.723524470722;IKZF1:-0.745714101926;POU6F1:-0.750083488702;ELF1,2,4:-0.751656933103;TLX1..3_NFIC{dimer}:-0.774362552992;EN1,2:-0.780874512501;SOX5:-0.84843299568;NANOG{mouse}:-0.858433414682;RXR{A,B,G}:-0.87113622455;XBP1:-0.891721857063;NFIL3:-0.902732328863;TGIF1:-0.908391432709;DMAP1_NCOR{1,2}_SMARC:-0.920410752609;HOXA9_MEIS1:-0.934637812436;RUNX1..3:-0.936612560363;IRF7:-0.948081603177;HES1:-0.948731473965;PAX3,7:-0.973707697887;NFATC1..3:-0.97946309235;JUN:-0.984814150695;SRF:-0.995954907782;BPTF:-1.0025780827;HIC1:-1.00271725066;PAX4:-1.00968672723;PDX1:-1.09530747636;NR6A1:-1.13214577174;STAT2,4,6:-1.13784002986;POU3F1..4:-1.1741070198;HAND1,2:-1.18135635893;HMGA1,2:-1.19246850347;TAL1_TCF{3,4,12}:-1.20470741256;SMAD1..7,9:-1.21928485322;NR3C1:-1.25307614997;ESR1:-1.29449502297;HBP1_HMGB_SSRP1_UBTF:-1.34108455234;DBP:-1.37104112116;NR1H4:-1.3751473157;ZNF238:-1.38454763301;ATF6:-1.41127364597;IRF1,2:-1.51539214946;NKX2-2,8:-1.54058690524;PPARG:-1.54598015561;GTF2A1,2:-1.57012334534;GLI1..3:-1.59649688711;NKX3-1:-1.71374231308;RXRA_VDR{dimer}:-1.74717507009;FOXL1:-1.77929415866;ALX4:-1.83957223847;NFE2L1:-2.12287476155;PAX6:-2.15639830872 | |top_motifs=OCT4_SOX2{dimer}:3.56068307166;bHLH_family:1.9493681649;TP53:1.88128485793;STAT1,3:1.75301395896;SNAI1..3:1.59097311849;NKX2-3_NKX2-5:1.46327795477;MYOD1:1.42838913823;XCPE1{core}:1.37443948952;CUX2:1.34804887517;TOPORS:1.27737718048;ZEB1:1.26425372882;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.24992690641;SP1:1.22130237533;SREBF1,2:1.18118898111;PATZ1:1.11340499721;PITX1..3:1.10132004395;MTF1:1.04461402359;TFAP2{A,C}:1.02546210018;ONECUT1,2:0.991054658472;NRF1:0.970251937648;RORA:0.955560187804;LEF1_TCF7_TCF7L1,2:0.94825766056;MAZ:0.942451578888;NFY{A,B,C}:0.890100090752;PAX2:0.888562268643;SOX2:0.850609146901;TBX4,5:0.823817728314;STAT5{A,B}:0.761486170838;ZNF143:0.742698865576;VSX1,2:0.689390254441;HIF1A:0.672272653459;ELK1,4_GABP{A,B1}:0.598930322855;LMO2:0.595882435555;RBPJ:0.586120563519;FOXN1:0.579715432065;ESRRA:0.567421712254;ATF4:0.54178685191;IKZF2:0.506792386864;TFAP2B:0.504722261145;FOXM1:0.480269381063;PAX8:0.475814775246;E2F1..5:0.475506668986;ALX1:0.44113080362;PAX1,9:0.440070281537;TEAD1:0.439551367156;MZF1:0.414051432529;SOX17:0.39607954821;GFI1:0.393184208559;TFDP1:0.384600131111;GTF2I:0.363524809997;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.340346987031;FOXQ1:0.329807075879;SOX{8,9,10}:0.320538204569;HSF1,2:0.284712443067;ZBTB16:0.270355188051;MYB:0.267050720077;POU5F1:0.245483839283;ZFP161:0.230773227286;FOX{F1,F2,J1}:0.201951578807;EGR1..3:0.200621987836;BREu{core}:0.199231151919;FOXP1:0.194845261738;EBF1:0.185860408227;CDX1,2,4:0.177322601746;TLX2:0.15560480819;ZNF384:0.133533930748;CDC5L:0.112696857267;RREB1:0.111822948509;ATF5_CREB3:0.0855566051543;HNF4A_NR2F1,2:0.0787095770348;NKX6-1,2:0.06404215009;GZF1:0.0512549305056;FOXD3:0.0124209723512;PRRX1,2:0.00884470640299;GATA6:0.00790462977337;POU2F1..3:-0.00810695593372;ADNP_IRX_SIX_ZHX:-0.0215550358257;ZBTB6:-0.038648762649;MED-1{core}:-0.0549693507103;TBP:-0.0806637282628;YY1:-0.0970193377142;NFE2L2:-0.121190903351;NANOG:-0.146563133945;CRX:-0.153743280474;ZNF148:-0.166611005299;CREB1:-0.174986614859;AIRE:-0.187702609909;FOS_FOS{B,L1}_JUN{B,D}:-0.195897089745;FOSL2:-0.200479631804;HNF1A:-0.222336488463;NFIX:-0.22884033212;EVI1:-0.244514674749;PRDM1:-0.248256132074;PBX1:-0.252261809739;KLF4:-0.255460569356;AHR_ARNT_ARNT2:-0.256283059534;NHLH1,2:-0.257458825531;REST:-0.264626077724;EP300:-0.26771481251;HOX{A4,D4}:-0.278241786189;BACH2:-0.279405594309;NKX2-1,4:-0.318742024244;NFE2:-0.329009453679;ZIC1..3:-0.340766404149;MYFfamily:-0.354343616202;ATF2:-0.377295819615;NFKB1_REL_RELA:-0.388320756125;TFCP2:-0.391648553158;T:-0.423007322986;UFEwm:-0.430716364262;HMX1:-0.439548597572;AR:-0.441066440204;MAFB:-0.442629080218;HOX{A5,B5}:-0.447295166547;NR5A1,2:-0.447915511762;FOXO1,3,4:-0.458442526383;POU1F1:-0.47615841823;CEBPA,B_DDIT3:-0.485562775923;SPZ1:-0.48672921735;FOXP3:-0.487513026745;TEF:-0.487896052744;HLF:-0.49112977273;SPI1:-0.502325485006;GATA4:-0.522409849995;HOX{A6,A7,B6,B7}:-0.529449384305;FOXA2:-0.543210880993;GCM1,2:-0.544603349346;ZNF423:-0.546719967595;LHX3,4:-0.580563259598;MYBL2:-0.5867960301;TFAP4:-0.601245179599;ARID5B:-0.604209807252;ETS1,2:-0.60451559583;FOX{D1,D2}:-0.634577151622;SPIB:-0.635473653499;RFX1:-0.67187892183;RFX2..5_RFXANK_RFXAP:-0.677671109053;MTE{core}:-0.696587122114;NKX3-2:-0.715773700675;MEF2{A,B,C,D}:-0.718408296105;PAX5:-0.718941197635;GFI1B:-0.719221690609;FOX{I1,J2}:-0.723524470722;IKZF1:-0.745714101926;POU6F1:-0.750083488702;ELF1,2,4:-0.751656933103;TLX1..3_NFIC{dimer}:-0.774362552992;EN1,2:-0.780874512501;SOX5:-0.84843299568;NANOG{mouse}:-0.858433414682;RXR{A,B,G}:-0.87113622455;XBP1:-0.891721857063;NFIL3:-0.902732328863;TGIF1:-0.908391432709;DMAP1_NCOR{1,2}_SMARC:-0.920410752609;HOXA9_MEIS1:-0.934637812436;RUNX1..3:-0.936612560363;IRF7:-0.948081603177;HES1:-0.948731473965;PAX3,7:-0.973707697887;NFATC1..3:-0.97946309235;JUN:-0.984814150695;SRF:-0.995954907782;BPTF:-1.0025780827;HIC1:-1.00271725066;PAX4:-1.00968672723;PDX1:-1.09530747636;NR6A1:-1.13214577174;STAT2,4,6:-1.13784002986;POU3F1..4:-1.1741070198;HAND1,2:-1.18135635893;HMGA1,2:-1.19246850347;TAL1_TCF{3,4,12}:-1.20470741256;SMAD1..7,9:-1.21928485322;NR3C1:-1.25307614997;ESR1:-1.29449502297;HBP1_HMGB_SSRP1_UBTF:-1.34108455234;DBP:-1.37104112116;NR1H4:-1.3751473157;ZNF238:-1.38454763301;ATF6:-1.41127364597;IRF1,2:-1.51539214946;NKX2-2,8:-1.54058690524;PPARG:-1.54598015561;GTF2A1,2:-1.57012334534;GLI1..3:-1.59649688711;NKX3-1:-1.71374231308;RXRA_VDR{dimer}:-1.74717507009;FOXL1:-1.77929415866;ALX4:-1.83957223847;NFE2L1:-2.12287476155;PAX6:-2.15639830872 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10593-108D8;search_select_hide=table117:FF:10593-108D8 | |||
}} | }} | ||
Latest revision as of 14:30, 3 June 2020
| Name: | testicular germ cell embryonal carcinoma cell line:NEC15 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12362 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
|
| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12362
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12362
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0827 |
| 10 | 10 | 0.0576 |
| 100 | 100 | 0.749 |
| 101 | 101 | 0.351 |
| 102 | 102 | 0.408 |
| 103 | 103 | 0.0222 |
| 104 | 104 | 0.46 |
| 105 | 105 | 0.622 |
| 106 | 106 | 0.00432 |
| 107 | 107 | 0.112 |
| 108 | 108 | 0.876 |
| 109 | 109 | 0.087 |
| 11 | 11 | 0.12 |
| 110 | 110 | 0.1 |
| 111 | 111 | 0.0104 |
| 112 | 112 | 0.483 |
| 113 | 113 | 0.143 |
| 114 | 114 | 0.0184 |
| 115 | 115 | 0.856 |
| 116 | 116 | 0.319 |
| 117 | 117 | 0.481 |
| 118 | 118 | 0.995 |
| 119 | 119 | 0.0508 |
| 12 | 12 | 0.993 |
| 120 | 120 | 0.1 |
| 121 | 121 | 0.923 |
| 122 | 122 | 0.76 |
| 123 | 123 | 0.613 |
| 124 | 124 | 0.0148 |
| 125 | 125 | 0.306 |
| 126 | 126 | 0.839 |
| 127 | 127 | 0.27 |
| 128 | 128 | 0.189 |
| 129 | 129 | 0.381 |
| 13 | 13 | 0.553 |
| 130 | 130 | 0.983 |
| 131 | 131 | 0.68 |
| 132 | 132 | 0.897 |
| 133 | 133 | 0.00303 |
| 134 | 134 | 0.0734 |
| 135 | 135 | 0.0604 |
| 136 | 136 | 0.288 |
| 137 | 137 | 0.565 |
| 138 | 138 | 0.0498 |
| 139 | 139 | 0.0843 |
| 14 | 14 | 0.929 |
| 140 | 140 | 0.489 |
| 141 | 141 | 0.42 |
| 142 | 142 | 0.529 |
| 143 | 143 | 6.61868e-4 |
| 144 | 144 | 0.205 |
| 145 | 145 | 0.0564 |
| 146 | 146 | 0.214 |
| 147 | 147 | 0.783 |
| 148 | 148 | 5.23473e-4 |
| 149 | 149 | 0.00262 |
| 15 | 15 | 0.0366 |
| 150 | 150 | 0.383 |
| 151 | 151 | 0.0701 |
| 152 | 152 | 0.947 |
| 153 | 153 | 0.791 |
| 154 | 154 | 0.469 |
| 155 | 155 | 0.395 |
| 156 | 156 | 0.0161 |
| 157 | 157 | 0.879 |
| 158 | 158 | 0.594 |
| 159 | 159 | 0.593 |
| 16 | 16 | 0.318 |
| 160 | 160 | 0.18 |
| 161 | 161 | 0.673 |
| 162 | 162 | 0.767 |
| 163 | 163 | 0.676 |
| 164 | 164 | 0.804 |
| 165 | 165 | 0.674 |
| 166 | 166 | 0.35 |
| 167 | 167 | 0.104 |
| 168 | 168 | 0.564 |
| 169 | 169 | 0.05 |
| 17 | 17 | 0.395 |
| 18 | 18 | 0.443 |
| 19 | 19 | 0.0663 |
| 2 | 2 | 0.835 |
| 20 | 20 | 0.892 |
| 21 | 21 | 0.55 |
| 22 | 22 | 0.476 |
| 23 | 23 | 0.21 |
| 24 | 24 | 0.799 |
| 25 | 25 | 0.578 |
| 26 | 26 | 0.234 |
| 27 | 27 | 0.973 |
| 28 | 28 | 0.495 |
| 29 | 29 | 0.467 |
| 3 | 3 | 0.048 |
| 30 | 30 | 0.921 |
| 31 | 31 | 0.723 |
| 32 | 32 | 9.69948e-4 |
| 33 | 33 | 0.473 |
| 34 | 34 | 0.747 |
| 35 | 35 | 0.194 |
| 36 | 36 | 0.144 |
| 37 | 37 | 0.395 |
| 38 | 38 | 0.608 |
| 39 | 39 | 0.248 |
| 4 | 4 | 0.998 |
| 40 | 40 | 0.489 |
| 41 | 41 | 0.318 |
| 42 | 42 | 0.293 |
| 43 | 43 | 0.111 |
| 44 | 44 | 0.49 |
| 45 | 45 | 0.759 |
| 46 | 46 | 0.113 |
| 47 | 47 | 0.984 |
| 48 | 48 | 0.601 |
| 49 | 49 | 0.0984 |
| 5 | 5 | 0.0541 |
| 50 | 50 | 0.599 |
| 51 | 51 | 0.8 |
| 52 | 52 | 0.766 |
| 53 | 53 | 0.987 |
| 54 | 54 | 0.836 |
| 55 | 55 | 0.269 |
| 56 | 56 | 0.92 |
| 57 | 57 | 0.54 |
| 58 | 58 | 0.072 |
| 59 | 59 | 0.278 |
| 6 | 6 | 0.91 |
| 60 | 60 | 0.119 |
| 61 | 61 | 0.637 |
| 62 | 62 | 0.0288 |
| 63 | 63 | 0.139 |
| 64 | 64 | 0.365 |
| 65 | 65 | 0.225 |
| 66 | 66 | 0.448 |
| 67 | 67 | 0.534 |
| 68 | 68 | 0.169 |
| 69 | 69 | 0.986 |
| 7 | 7 | 0.588 |
| 70 | 70 | 0.022 |
| 71 | 71 | 0.0166 |
| 72 | 72 | 0.305 |
| 73 | 73 | 0.299 |
| 74 | 74 | 0.728 |
| 75 | 75 | 0.349 |
| 76 | 76 | 0.972 |
| 77 | 77 | 0.294 |
| 78 | 78 | 0.828 |
| 79 | 79 | 0.19 |
| 8 | 8 | 0.0134 |
| 80 | 80 | 0.3 |
| 81 | 81 | 0.0995 |
| 82 | 82 | 0.0281 |
| 83 | 83 | 0.194 |
| 84 | 84 | 0.806 |
| 85 | 85 | 0.268 |
| 86 | 86 | 0.699 |
| 87 | 87 | 0.129 |
| 88 | 88 | 0.19 |
| 89 | 89 | 0.0547 |
| 9 | 9 | 0.156 |
| 90 | 90 | 0.0745 |
| 91 | 91 | 0.16 |
| 92 | 92 | 0.174 |
| 93 | 93 | 0.904 |
| 94 | 94 | 0.507 |
| 95 | 95 | 0.813 |
| 96 | 96 | 0.0241 |
| 97 | 97 | 0.685 |
| 98 | 98 | 0.265 |
| 99 | 99 | 0.695 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12362
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
CL:0000586 germ cell
DOID:3095 germ cell and embryonal cancer
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100297 carcinoma cell line sample
UBERON:0000473 testis
UBERON:0000922 embryo
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)
0000039 (germ line cell)
0000586 (germ cell)
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
3095 (germ cell and embryonal cancer)
305 (carcinoma)
2994 (germ cell cancer)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000473 (testis)
0000991 (gonad)
0005156 (reproductive structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003135 (male reproductive organ)
0003133 (reproductive organ)
0002323 (body cavity)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0003101 (male organism)
0000079 (male reproductive system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0009117 (indifferent gonad)
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0005564 (gonad primordium)
UBERON:0010316 (germ layer / neural crest)
