FF:11466-119B8: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| (27 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005777 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005777 | ||
|accession_numbers=CAGE;DRX008515;DRR009387;DRZ000812;DRZ002197;DRZ012162;DRZ013547 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX036998;DRR041364;DRZ007006 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000995,UBERON:0003134,UBERON:0005156,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0003975,UBERON:0004175,UBERON:0010317,UBERON:0003100,UBERON:0000474 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0002601 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000185 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Uterine%252c%2520donor3.CNhs11927.11466-119B8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Uterine%252c%2520donor3.CNhs11927.11466-119B8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Uterine%252c%2520donor3.CNhs11927.11466-119B8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Uterine%252c%2520donor3.CNhs11927.11466-119B8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Uterine%252c%2520donor3.CNhs11927.11466-119B8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11466-119B8 | |id=FF:11466-119B8 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000185 | ||
|is_obsolete= | |||
|library_id=CNhs11927 | |||
|library_id_phase_based=2:CNhs11927 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11466 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10002.GGCTAC.11466 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11466 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10002.GGCTAC.11466 | |||
|name=Smooth Muscle Cells - Uterine, donor3 | |name=Smooth Muscle Cells - Uterine, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11927,LSID835,release010,COMPLETED | |profile_hcage=CNhs11927,LSID835,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10002,,, | |profile_srnaseq=SRhi10002,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.065931353248816,0,0,0,0,-0.160318030086386,0,0.103681729540885,-0.15054085407931,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0214603038507959,0,0,0,0,0,0.0339048102295742,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0.0774162745186983,0,0.232874726698813,0,0,0,0,0,0,0.167606885801345,0,0,0,0,0,0,0.131862706497632,-0.0969923612426051,0,0,0.0345190792845348,0,0,0,0,0,0,0,0,0,0,0,0,0,0.131862706497632,0,0,0,0,0,0,0,0,0,0,-0.137008415445522,0.065931353248816,0,0,-0.372364422210352,0.0597997483130045,0,0.131862706497632,0.065931353248816,0,0.0338273552599253,-0.0725458475520795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161379666240535,0,0,0,0.059153872389779,0.255021318641457,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0.131862706497632,0.0338273552599253,0,0,0,0,0,0,0.131862706497632,0,0.131862706497632,0,0,-0.014304148586751,0,-0.159316942280218,-0.0116524360258402,0,0,0.238642292952058,0,0.131862706497632,0,0,0,0,0,0,0,0.104754859746249,0,0.264356724882476,0,0,0,0,0,-0.173609524400776,0,-0.0168734229136144,-0.0683442610773682,0,0,0,0,0.0380186009292618,0,0.0109832227038911,0.0491425381742144,-0.148693995529738,0.0884636689178179,-0.04680465889238,0,0,0,-0.0187375625789315,-0.327972676404754,0,0,-0.121779851751874,-0.0239649803247638,0,0,0.90567185234205,0,-0.152262637265344,0.121928974701352,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190179220488038,-0.326988596678969,0,0,0,0,-0.216680343021605,0,0,0.473727117823316,0.200714818862083,-0.0167695242847208,-0.0159664560339122,0,-0.0695150003110998,-0.0660526169057821,-0.621268395564508,-0.255564026874283,0.295674127458637,0.253094257279928,0,-0.137008415445522,-0.244278327096266,-0.0220831965627026,-0.131694896696264,0,0.130228417971313,0.0155249483831814,0,0,0,0.0593840566501918,0,-0.15538326075742,0.132394567385643,-0.094628698612018,-0.047053301977717,0.0741863882853925,0.0395569961479445,-0.0800556714303178,0.339390098194112,-0.0737926390682357,0,0.081504222941688,-0.0643892045536871,0,-0.0523678909119742,-0.205310674756093,-0.201797121055131,0.00668310868373723,0,-0.352114755313349,0.164530465621445,0,-0.011868974105332,0.0279889706839738,0,0,0.0437320509910044,0,0,0,0,0,-0.072487085149477,-0.155848329201807,-0.100992855057913,0,-0.212335399092225,0,-0.00522858732649105,0,-0.123195728137438,-0.0703080551131738,-0.0958655554099981,-0.160771098098604,0,-0.081216381070937,-0.112546882895922,-0.164990696339003,0.119599496626009,-0.0584468268118252,-0.188477631757985,-0.0505973777556393,-0.372364422210352,0.17293211431518,0,1.3693215067295,-0.0753850732114734,0.110729569088508,-0.137503829603778,-0.161729210384613,-0.178472578684202,0,-0.290182152906394,0,-0.181100920604552,0,-0.29585114461468,-0.0973577746434647,-0.439289374580686,0.183482191168958,0,-0.0688587585097102,-0.345054960944199,0,0.0971515828520314,0,0,-0.150367083334639,-0.254619989682807,-0.211650427864589,0.21021708847088,0,-0.0409707120372738,0,0,-0.110958850723598,0.079293238707402,0,0.410883896342633,0.299025810399491,0.171514878387051,-0.115971073434934,0.232874726698813,0,0.0120829360019616,0,0,-0.222284249989671,0.06825786135983,-0.487920617461002,-0.253326341486756,0,-0.0426914562054398,0,0,0.137241510506615,0,0.0845059067524515,0,0,0.155176028946546,0.172416451746504,0,0,0.314769276471791,0,0,0,0,0,0,0,0,-0.068471408015994,-0.0400640537446573,0,0,0,0,0,0,0,0,0,0.232874726698813,0.415212722410557,0.0522302369934178,0.260626398151939,0,0,0,0,0.227352574276301,0.0296381646040897,0,0,0.131862706497632,0,0,0,0.0457217167084204,0,0,0,0,0.175144269645149,0.0810020364010399,0,0,0,-0.145091695104159,0,0,0,0,-0.249477770783815,0,0,-0.264825043898427,0,-0.132650228167275,-0.0815818795468414,0,-0.00561564834701275,0.060474700893046,-0.0892641263230958,0,0,-0.129484425292256,0,0.131862706497632,-0.0575690534703128,0,0,0,0,0,0,0,0,0.131862706497632,0.100454764072035,0,0,0,0,0,0,0,0,0,0,0,-0.189099123544872,-0.0922240566585104,0,0,0,0,0,0,0,0.107756683418729,-0.106181210819781,0,0,0,0,0,0,0,0,-0.156656663191451,0,0,0,0,0,-0.0969923612426051,0,0,0,0.131862706497632,-0.432944414656252,0,0,-0.0444874054947006,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00854362046218397,0.103681729540885,0,0,0,0,0,0,0,0.220512076412859,0,0.131862706497632,0,0,-0.113884373708977,0,0,0,-0.104796384789156,0,-0.160318030086386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.145759424276905,0,0.116277139328705,0.00592843212102906,0,0,0.179635569310769,0,0,0,0,0,0,0.0850969393208795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00456342576390103,0,0,0,0,0.383643813828359,0,0,0.0339048102295742,0,0,-0.0920328098005262,0,0,0,0,0.0550383975650953,0,0.204558298767052,0.235449438495201,-0.0391468085535367,0,0,0,0.137436334431725,0,0,0,0.131862706497632,0.247991889052889,0,0,0,0,0,0,0,0,0.232874726698813,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0214603038507959,0,0,0,0,0,0,0,0,0,0,0,0,0.065931353248816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.08242600007399,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,-0.081223523159412,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0376471098793809,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0836406312585775,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.317629315816899,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0.49534537461895,-0.0232668917822543,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0207358815896916,0,0,0.168247796510284,0,0,0,0,0,0,0,0,0,0,0,0,0.0705425273475053,0,0,0,0,0,0,0,0,0,0,0.33521377160269,0,0,0,0,0,0,0,0,0.584114986052191,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0683499579017858,0.255021318641457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0837269250985255,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0296969223726757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0362814326974131,0,0,0,0,0,0,0,0,0.131862706497632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.131862706497632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116437363349407,0,0,0,0,0,0,0,0,0.131862706497632,0,0,0,0,0,0,0,0.131862706497632,0,0,0,0,0,0.190896625983437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.065931353248816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0407990509371004,0,0,0,0,0,0,0,-0.122695996997001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0237397835175619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0342147672004326,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.311254640931208,0,0,0,-0.0797419986649781,0,0,0,0,0,0,0,0,0,0,0.131862706497632,0,0,0,0,0,0,0,0.0345190792845348,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171600005893301,0,0,0,0,0,0,0,0,0,0,0.0751872718215995,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0976221682282645,0,0,0.0895752380205158,0,0.0419920455313714,0.0315189533500641,0,0,0,0,0,0.134874251879002,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.137338502423895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.065931353248816,-0.280072095322966,0,-0.0299778330938149,-0.265211982024383,0,0.127438888077198,-0.157801683944058,0,0,0,0,0,0.139776381381492,-0.0364839533709614,0,0,0,0,0,0,0,0,0,0,0,0.232874726698813,0,0,0,0,0,0,0.0750037603350326,0.0452936408772215,0,0.0642397224793515,0,0,-0.182662388468495,0,0,0,-0.0959594073735869 | |||
|rna_box=119 | |rna_box=119 | ||
|rna_catalog_number=N/A | |rna_catalog_number=N/A | ||
| Line 56: | Line 82: | ||
|rna_tube_id=119B8 | |rna_tube_id=119B8 | ||
|rna_weight_ug=5.6 | |rna_weight_ug=5.6 | ||
|rnaseq_library_id=SRhi10002.GGCTAC | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=C-14059 | |sample_cell_catalog=C-14059 | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;5.10665228664208e-240!GO:0005737;cytoplasm;1.65820946645981e-199!GO:0043226;organelle;7.68780127105881e-187!GO:0043229;intracellular organelle;1.41029569403601e-186!GO:0043231;intracellular membrane-bound organelle;1.07381183560112e-181!GO:0043227;membrane-bound organelle;2.49082404602931e-181!GO:0044422;organelle part;7.19845859000098e-152!GO:0044446;intracellular organelle part;2.16049161477376e-150!GO:0044444;cytoplasmic part;1.68802544423571e-145!GO:0032991;macromolecular complex;3.82996432361723e-106!GO:0030529;ribonucleoprotein complex;8.93560227133297e-93!GO:0044237;cellular metabolic process;6.65899558869586e-82!GO:0044238;primary metabolic process;2.63991830593064e-81!GO:0005515;protein binding;1.40786229282315e-73!GO:0005739;mitochondrion;1.57146048526826e-72!GO:0043170;macromolecule metabolic process;3.86399527270919e-72!GO:0043233;organelle lumen;6.0337782573421e-71!GO:0031974;membrane-enclosed lumen;6.0337782573421e-71!GO:0044428;nuclear part;9.56994458178516e-70!GO:0005634;nucleus;1.93860115181121e-66!GO:0003723;RNA binding;1.06699399443376e-63!GO:0005840;ribosome;4.97266845253508e-59!GO:0043234;protein complex;4.03318398201631e-53!GO:0003735;structural constituent of ribosome;6.44280348345406e-52!GO:0031090;organelle membrane;9.31889596355255e-51!GO:0006412;translation;1.05973519757042e-50!GO:0016043;cellular component organization and biogenesis;1.46515938207713e-50!GO:0044429;mitochondrial part;6.97186986650699e-49!GO:0006396;RNA processing;2.62726611008795e-47!GO:0019538;protein metabolic process;5.13262611968966e-47!GO:0015031;protein transport;2.937474484962e-45!GO:0009058;biosynthetic process;3.01783318577749e-44!GO:0033036;macromolecule localization;4.14508072665179e-44!GO:0031967;organelle envelope;5.84849822421543e-44!GO:0031975;envelope;1.10515382578396e-43!GO:0033279;ribosomal subunit;3.31567903125652e-43!GO:0044249;cellular biosynthetic process;2.70940540699414e-42!GO:0045184;establishment of protein localization;8.31832699989684e-42!GO:0005829;cytosol;1.37955068367082e-41!GO:0008104;protein localization;2.80008010945084e-41!GO:0044260;cellular macromolecule metabolic process;3.64407314191656e-41!GO:0044267;cellular protein metabolic process;1.86280206199396e-40!GO:0043228;non-membrane-bound organelle;1.88128499217464e-40!GO:0043232;intracellular non-membrane-bound organelle;1.88128499217464e-40!GO:0031981;nuclear lumen;2.97489413953667e-39!GO:0009059;macromolecule biosynthetic process;9.90917890823119e-38!GO:0046907;intracellular transport;3.16376887974819e-37!GO:0016071;mRNA metabolic process;9.24246016234054e-37!GO:0006996;organelle organization and biogenesis;1.1738229392744e-35!GO:0043283;biopolymer metabolic process;1.70728612064127e-35!GO:0008380;RNA splicing;1.94439700613677e-34!GO:0006397;mRNA processing;8.18262378264761e-33!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.14381125214172e-32!GO:0010467;gene expression;5.34562647990119e-32!GO:0065003;macromolecular complex assembly;6.80717026227911e-32!GO:0005740;mitochondrial envelope;1.68083065897334e-30!GO:0006259;DNA metabolic process;2.80708021873949e-30!GO:0006886;intracellular protein transport;2.9325542826545e-30!GO:0022607;cellular component assembly;2.39262947680091e-29!GO:0031966;mitochondrial membrane;5.42689184998675e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);6.76600122294666e-29!GO:0007049;cell cycle;1.93922824047669e-28!GO:0019866;organelle inner membrane;2.78471834202179e-28!GO:0022613;ribonucleoprotein complex biogenesis and assembly;7.59937883059423e-28!GO:0005743;mitochondrial inner membrane;2.84567101165431e-26!GO:0005681;spliceosome;8.35463497190947e-25!GO:0006119;oxidative phosphorylation;9.09689316657471e-25!GO:0051649;establishment of cellular localization;4.12973720516388e-24!GO:0051641;cellular localization;7.57249718725616e-24!GO:0044445;cytosolic part;1.34146514770967e-23!GO:0044455;mitochondrial membrane part;3.37311186356593e-23!GO:0005654;nucleoplasm;5.2675416105442e-23!GO:0022402;cell cycle process;1.10242210508914e-22!GO:0015935;small ribosomal subunit;3.2947741651188e-22!GO:0015934;large ribosomal subunit;4.38315107164279e-22!GO:0000278;mitotic cell cycle;8.8869036859004e-22!GO:0031980;mitochondrial lumen;9.00239061614488e-22!GO:0005759;mitochondrial matrix;9.00239061614488e-22!GO:0000166;nucleotide binding;9.05550676814856e-22!GO:0006457;protein folding;3.56607540704141e-21!GO:0005783;endoplasmic reticulum;5.06863065047491e-21!GO:0012505;endomembrane system;1.07208843011748e-20!GO:0016462;pyrophosphatase activity;1.9318194738416e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.03455148466286e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;3.04163295784473e-20!GO:0017111;nucleoside-triphosphatase activity;1.33266910936575e-19!GO:0048770;pigment granule;3.61709076408601e-19!GO:0042470;melanosome;3.61709076408601e-19!GO:0005746;mitochondrial respiratory chain;5.57356313257128e-19!GO:0005761;mitochondrial ribosome;9.75857301080152e-19!GO:0000313;organellar ribosome;9.75857301080152e-19!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.88930327477321e-18!GO:0006974;response to DNA damage stimulus;3.94413714737733e-18!GO:0044451;nucleoplasm part;4.75192506691306e-18!GO:0000502;proteasome complex (sensu Eukaryota);6.74699937007179e-18!GO:0000087;M phase of mitotic cell cycle;7.36242024809607e-18!GO:0051186;cofactor metabolic process;8.50483814479024e-18!GO:0007067;mitosis;1.50255531216389e-17!GO:0005694;chromosome;3.10631222050464e-17!GO:0005730;nucleolus;4.01750625761492e-17!GO:0050136;NADH dehydrogenase (quinone) activity;1.27114514455445e-16!GO:0003954;NADH dehydrogenase activity;1.27114514455445e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.27114514455445e-16!GO:0022618;protein-RNA complex assembly;1.27114514455445e-16!GO:0044432;endoplasmic reticulum part;1.44133124805918e-16!GO:0043285;biopolymer catabolic process;1.60329978168504e-16!GO:0044427;chromosomal part;2.94410654607255e-16!GO:0044265;cellular macromolecule catabolic process;5.75937973778387e-16!GO:0022403;cell cycle phase;7.60927535674678e-16!GO:0016874;ligase activity;8.87219103919967e-16!GO:0003676;nucleic acid binding;1.10028549040534e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;1.42599233638957e-15!GO:0006605;protein targeting;1.47801818603873e-15!GO:0032553;ribonucleotide binding;1.68178668587536e-15!GO:0032555;purine ribonucleotide binding;1.68178668587536e-15!GO:0009057;macromolecule catabolic process;1.68178668587536e-15!GO:0051301;cell division;2.01804029466619e-15!GO:0019941;modification-dependent protein catabolic process;2.34754393598323e-15!GO:0043632;modification-dependent macromolecule catabolic process;2.34754393598323e-15!GO:0017076;purine nucleotide binding;2.51202378653799e-15!GO:0006511;ubiquitin-dependent protein catabolic process;3.08425596025084e-15!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.72087371479971e-15!GO:0044257;cellular protein catabolic process;3.92146746615762e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);5.08823839733385e-15!GO:0044248;cellular catabolic process;5.52550461764414e-15!GO:0006281;DNA repair;5.77231611880398e-15!GO:0006512;ubiquitin cycle;8.7411609910972e-15!GO:0042775;organelle ATP synthesis coupled electron transport;8.7411609910972e-15!GO:0042773;ATP synthesis coupled electron transport;8.7411609910972e-15!GO:0030964;NADH dehydrogenase complex (quinone);8.81100286177875e-15!GO:0045271;respiratory chain complex I;8.81100286177875e-15!GO:0005747;mitochondrial respiratory chain complex I;8.81100286177875e-15!GO:0008135;translation factor activity, nucleic acid binding;1.14857019105083e-14!GO:0030163;protein catabolic process;1.29043469205785e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.43529917330333e-14!GO:0008134;transcription factor binding;1.75761434157714e-14!GO:0005635;nuclear envelope;2.7262975458577e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.77845060518761e-14!GO:0006732;coenzyme metabolic process;5.50402850074352e-14!GO:0009719;response to endogenous stimulus;6.8228973604429e-14!GO:0000279;M phase;9.21316409388927e-14!GO:0005794;Golgi apparatus;1.36575506842955e-13!GO:0048193;Golgi vesicle transport;1.39362340194214e-13!GO:0051082;unfolded protein binding;1.4533518872238e-13!GO:0005524;ATP binding;4.36933539373937e-13!GO:0009055;electron carrier activity;5.17236881437359e-13!GO:0051276;chromosome organization and biogenesis;5.52112640116898e-13!GO:0032559;adenyl ribonucleotide binding;7.87734176690235e-13!GO:0000074;regulation of progression through cell cycle;7.97538355897321e-13!GO:0051726;regulation of cell cycle;9.26863336639877e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;1.37130619702945e-12!GO:0000375;RNA splicing, via transesterification reactions;1.37130619702945e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.37130619702945e-12!GO:0030554;adenyl nucleotide binding;1.67598493669084e-12!GO:0031965;nuclear membrane;2.70308528129045e-12!GO:0042254;ribosome biogenesis and assembly;2.90567470613958e-12!GO:0005793;ER-Golgi intermediate compartment;4.30698137300359e-12!GO:0009259;ribonucleotide metabolic process;5.38810839543535e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;5.87735297256264e-12!GO:0044453;nuclear membrane part;6.28542817050412e-12!GO:0016192;vesicle-mediated transport;7.56844577467839e-12!GO:0006260;DNA replication;8.38712110238512e-12!GO:0006163;purine nucleotide metabolic process;1.49712484564025e-11!GO:0005789;endoplasmic reticulum membrane;2.28939079880438e-11!GO:0003743;translation initiation factor activity;3.77349690490133e-11!GO:0009150;purine ribonucleotide metabolic process;4.15947242421719e-11!GO:0015630;microtubule cytoskeleton;4.81513362013419e-11!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;5.15393514265567e-11!GO:0016070;RNA metabolic process;5.92262508590856e-11!GO:0006164;purine nucleotide biosynthetic process;1.33138790310342e-10!GO:0009260;ribonucleotide biosynthetic process;1.619410523514e-10!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.79161612135099e-10!GO:0006413;translational initiation;1.91796838684114e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;2.19777254579182e-10!GO:0006913;nucleocytoplasmic transport;2.86407436010263e-10!GO:0042623;ATPase activity, coupled;3.30159460993832e-10!GO:0009152;purine ribonucleotide biosynthetic process;3.59414697332217e-10!GO:0009199;ribonucleoside triphosphate metabolic process;3.72717838686373e-10!GO:0016887;ATPase activity;3.79656807575736e-10!GO:0006399;tRNA metabolic process;3.84155214642537e-10!GO:0009141;nucleoside triphosphate metabolic process;5.25517400576922e-10!GO:0003712;transcription cofactor activity;5.55984406821459e-10!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.9131316938488e-10!GO:0009144;purine nucleoside triphosphate metabolic process;5.9131316938488e-10!GO:0051169;nuclear transport;6.2065595754448e-10!GO:0006323;DNA packaging;6.40952679817752e-10!GO:0008565;protein transporter activity;6.71249611519426e-10!GO:0065004;protein-DNA complex assembly;7.85699925796731e-10!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;8.93478933560753e-10!GO:0009056;catabolic process;1.13918706906188e-09!GO:0006446;regulation of translational initiation;1.72743634868987e-09!GO:0043412;biopolymer modification;1.90571561119347e-09!GO:0015986;ATP synthesis coupled proton transport;3.04081649038178e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.04081649038178e-09!GO:0051188;cofactor biosynthetic process;3.05373290553157e-09!GO:0005643;nuclear pore;3.27690923441788e-09!GO:0016604;nuclear body;3.48313016691433e-09!GO:0009142;nucleoside triphosphate biosynthetic process;3.69879400153524e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.69879400153524e-09!GO:0000785;chromatin;3.92700015878807e-09!GO:0009117;nucleotide metabolic process;4.28286792590447e-09!GO:0045333;cellular respiration;5.29861849167385e-09!GO:0006461;protein complex assembly;5.65366761759402e-09!GO:0017038;protein import;5.94234376072398e-09!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;5.98764109609199e-09!GO:0009145;purine nucleoside triphosphate biosynthetic process;5.98764109609199e-09!GO:0019829;cation-transporting ATPase activity;7.33579897316004e-09!GO:0006333;chromatin assembly or disassembly;7.43452070813298e-09!GO:0009060;aerobic respiration;7.43494751198485e-09!GO:0046034;ATP metabolic process;8.49410359535887e-09!GO:0065002;intracellular protein transport across a membrane;9.12338515518435e-09!GO:0015078;hydrogen ion transmembrane transporter activity;1.04109003639332e-08!GO:0006888;ER to Golgi vesicle-mediated transport;1.31426161793749e-08!GO:0006364;rRNA processing;2.15171099565035e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.33422662683424e-08!GO:0004812;aminoacyl-tRNA ligase activity;2.33422662683424e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.33422662683424e-08!GO:0006464;protein modification process;3.08014787015477e-08!GO:0043038;amino acid activation;3.13362630147495e-08!GO:0006418;tRNA aminoacylation for protein translation;3.13362630147495e-08!GO:0043039;tRNA aminoacylation;3.13362630147495e-08!GO:0006334;nucleosome assembly;3.13362630147495e-08!GO:0016491;oxidoreductase activity;3.57396088762371e-08!GO:0016072;rRNA metabolic process;3.69432063239785e-08!GO:0012501;programmed cell death;3.7848963636499e-08!GO:0004386;helicase activity;3.7848963636499e-08!GO:0007005;mitochondrion organization and biogenesis;3.84276117253683e-08!GO:0008639;small protein conjugating enzyme activity;4.23814680116411e-08!GO:0048523;negative regulation of cellular process;4.82111477451359e-08!GO:0006915;apoptosis;5.23689090763956e-08!GO:0046930;pore complex;6.66021204187013e-08!GO:0030532;small nuclear ribonucleoprotein complex;6.66933925495314e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;7.53010425606399e-08!GO:0006754;ATP biosynthetic process;7.53011087629467e-08!GO:0006753;nucleoside phosphate metabolic process;7.53011087629467e-08!GO:0004842;ubiquitin-protein ligase activity;8.28105360733037e-08!GO:0005839;proteasome core complex (sensu Eukaryota);9.16322255014377e-08!GO:0019787;small conjugating protein ligase activity;9.30587496389316e-08!GO:0030120;vesicle coat;9.68903769584221e-08!GO:0030662;coated vesicle membrane;9.68903769584221e-08!GO:0043566;structure-specific DNA binding;1.01718494829732e-07!GO:0031497;chromatin assembly;1.01959547928941e-07!GO:0016469;proton-transporting two-sector ATPase complex;1.0341108547337e-07!GO:0005813;centrosome;1.03872389129664e-07!GO:0005788;endoplasmic reticulum lumen;1.45973727294935e-07!GO:0016607;nuclear speck;1.54932077964505e-07!GO:0051187;cofactor catabolic process;1.56019471360241e-07!GO:0005819;spindle;1.59342873196649e-07!GO:0003697;single-stranded DNA binding;1.61014243546393e-07!GO:0009108;coenzyme biosynthetic process;1.61949563615905e-07!GO:0005815;microtubule organizing center;1.67627108497161e-07!GO:0006099;tricarboxylic acid cycle;1.76095032505043e-07!GO:0046356;acetyl-CoA catabolic process;1.76095032505043e-07!GO:0043687;post-translational protein modification;1.85257007574534e-07!GO:0008026;ATP-dependent helicase activity;2.25724370801568e-07!GO:0048475;coated membrane;2.61721347319095e-07!GO:0030117;membrane coat;2.61721347319095e-07!GO:0000775;chromosome, pericentric region;2.67626713560845e-07!GO:0005768;endosome;2.98488551354858e-07!GO:0008219;cell death;3.03529512672912e-07!GO:0016265;death;3.03529512672912e-07!GO:0006403;RNA localization;3.47292460996431e-07!GO:0003924;GTPase activity;3.73051634296004e-07!GO:0009109;coenzyme catabolic process;4.44017743499213e-07!GO:0050657;nucleic acid transport;4.4636080657692e-07!GO:0051236;establishment of RNA localization;4.4636080657692e-07!GO:0050658;RNA transport;4.4636080657692e-07!GO:0016787;hydrolase activity;5.69898422357052e-07!GO:0048519;negative regulation of biological process;6.07078605359424e-07!GO:0016881;acid-amino acid ligase activity;6.26155477933182e-07!GO:0004298;threonine endopeptidase activity;6.73239660870241e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;6.95609514022343e-07!GO:0006084;acetyl-CoA metabolic process;7.28515424042303e-07!GO:0045786;negative regulation of progression through cell cycle;7.88419941983089e-07!GO:0006752;group transfer coenzyme metabolic process;1.25542314464912e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.33399592798796e-06!GO:0016779;nucleotidyltransferase activity;1.36320910534094e-06!GO:0006091;generation of precursor metabolites and energy;1.45660554497957e-06!GO:0005762;mitochondrial large ribosomal subunit;1.58589643547868e-06!GO:0000315;organellar large ribosomal subunit;1.58589643547868e-06!GO:0007051;spindle organization and biogenesis;1.73316824764996e-06!GO:0045259;proton-transporting ATP synthase complex;1.82814155627853e-06!GO:0005770;late endosome;2.12120571644813e-06!GO:0000314;organellar small ribosomal subunit;2.60911291037242e-06!GO:0005763;mitochondrial small ribosomal subunit;2.60911291037242e-06!GO:0016740;transferase activity;2.85444976142834e-06!GO:0016853;isomerase activity;2.95231161007906e-06!GO:0051246;regulation of protein metabolic process;3.10434543208839e-06!GO:0016023;cytoplasmic membrane-bound vesicle;3.24322517263918e-06!GO:0031988;membrane-bound vesicle;3.24976656236336e-06!GO:0051170;nuclear import;3.45333522437409e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.49625483216916e-06!GO:0006366;transcription from RNA polymerase II promoter;3.52941796917817e-06!GO:0000245;spliceosome assembly;3.83097872717017e-06!GO:0008654;phospholipid biosynthetic process;4.38771739307645e-06!GO:0031982;vesicle;5.27025298425888e-06!GO:0006606;protein import into nucleus;5.45389517044165e-06!GO:0044440;endosomal part;5.46820745503431e-06!GO:0010008;endosome membrane;5.46820745503431e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;5.57039075098111e-06!GO:0016859;cis-trans isomerase activity;5.61919240718656e-06!GO:0044431;Golgi apparatus part;5.61959912096507e-06!GO:0031410;cytoplasmic vesicle;5.99941879074058e-06!GO:0006613;cotranslational protein targeting to membrane;6.20888274465377e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;6.20888274465377e-06!GO:0032446;protein modification by small protein conjugation;6.35872539376727e-06!GO:0051329;interphase of mitotic cell cycle;6.60509251540316e-06!GO:0045454;cell redox homeostasis;7.59594007922187e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;8.48323490002947e-06!GO:0016567;protein ubiquitination;1.24267138484068e-05!GO:0051028;mRNA transport;1.51696177382507e-05!GO:0031252;leading edge;1.64724012996473e-05!GO:0007010;cytoskeleton organization and biogenesis;2.04180260266297e-05!GO:0006261;DNA-dependent DNA replication;2.22126003792712e-05!GO:0000151;ubiquitin ligase complex;2.25462369357563e-05!GO:0042981;regulation of apoptosis;2.28987441419738e-05!GO:0030867;rough endoplasmic reticulum membrane;2.28987441419738e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.30767655869594e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;2.45956190415502e-05!GO:0000075;cell cycle checkpoint;2.48676842553923e-05!GO:0043067;regulation of programmed cell death;2.53225610545565e-05!GO:0003713;transcription coactivator activity;2.86091957407714e-05!GO:0005773;vacuole;3.25386072914964e-05!GO:0006916;anti-apoptosis;3.30596633355448e-05!GO:0051325;interphase;3.49269163256767e-05!GO:0005525;GTP binding;3.54226944373955e-05!GO:0009165;nucleotide biosynthetic process;3.56313297150421e-05!GO:0031968;organelle outer membrane;3.67006706983423e-05!GO:0043069;negative regulation of programmed cell death;3.94163434306661e-05!GO:0003899;DNA-directed RNA polymerase activity;4.60549247497676e-05!GO:0005798;Golgi-associated vesicle;4.8178380239838e-05!GO:0019867;outer membrane;5.37801644629695e-05!GO:0043623;cellular protein complex assembly;5.41187595185992e-05!GO:0016568;chromatin modification;5.46671896860959e-05!GO:0006793;phosphorus metabolic process;5.6713529747566e-05!GO:0006796;phosphate metabolic process;5.6713529747566e-05!GO:0015980;energy derivation by oxidation of organic compounds;5.78457734132818e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;5.93936541709082e-05!GO:0043066;negative regulation of apoptosis;6.0246316510089e-05!GO:0016310;phosphorylation;6.05625830507205e-05!GO:0050794;regulation of cellular process;6.26007715570086e-05!GO:0005667;transcription factor complex;6.50918384640315e-05!GO:0000139;Golgi membrane;7.32397951351303e-05!GO:0003714;transcription corepressor activity;7.41796902953032e-05!GO:0043021;ribonucleoprotein binding;7.72018701909532e-05!GO:0000776;kinetochore;8.01467753190462e-05!GO:0016564;transcription repressor activity;8.41937539682714e-05!GO:0051427;hormone receptor binding;9.28479137669152e-05!GO:0046474;glycerophospholipid biosynthetic process;0.00012370251044244!GO:0006612;protein targeting to membrane;0.000125938931449806!GO:0003724;RNA helicase activity;0.000126982251546559!GO:0005769;early endosome;0.000129196728732195!GO:0016126;sterol biosynthetic process;0.000150522548422703!GO:0033116;ER-Golgi intermediate compartment membrane;0.000157222225463553!GO:0016563;transcription activator activity;0.000160113058103104!GO:0051789;response to protein stimulus;0.000163815028263984!GO:0006986;response to unfolded protein;0.000163815028263984!GO:0031324;negative regulation of cellular metabolic process;0.000165413011740248!GO:0006839;mitochondrial transport;0.000179317971267302!GO:0000786;nucleosome;0.000189788384631866!GO:0035257;nuclear hormone receptor binding;0.000193015150232633!GO:0000323;lytic vacuole;0.000205873869119506!GO:0005764;lysosome;0.000205873869119506!GO:0005741;mitochondrial outer membrane;0.000210879044235438!GO:0032561;guanyl ribonucleotide binding;0.000242908412122209!GO:0019001;guanyl nucleotide binding;0.000242908412122209!GO:0005048;signal sequence binding;0.000249303461668777!GO:0008094;DNA-dependent ATPase activity;0.000276142424790462!GO:0006626;protein targeting to mitochondrion;0.000286694346268365!GO:0006302;double-strand break repair;0.000293071151153641!GO:0005657;replication fork;0.000316083943165574!GO:0005885;Arp2/3 protein complex;0.000320356256729084!GO:0008250;oligosaccharyl transferase complex;0.000321374358900648!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000328490667637402!GO:0005791;rough endoplasmic reticulum;0.000356576925932139!GO:0005905;coated pit;0.000378643059732773!GO:0043681;protein import into mitochondrion;0.000387139113612058!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000402639933714523!GO:0004576;oligosaccharyl transferase activity;0.00041873621265889!GO:0030663;COPI coated vesicle membrane;0.000419988884267157!GO:0030126;COPI vesicle coat;0.000419988884267157!GO:0008361;regulation of cell size;0.000419988884267157!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00042522660391413!GO:0005874;microtubule;0.000443702010948106!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000460429337673143!GO:0007088;regulation of mitosis;0.00049832317743871!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000525704253893828!GO:0006414;translational elongation;0.000559816837713326!GO:0042802;identical protein binding;0.000564460417214739!GO:0043284;biopolymer biosynthetic process;0.000564853297437664!GO:0009892;negative regulation of metabolic process;0.0005884456070669!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000613655798837037!GO:0008610;lipid biosynthetic process;0.000613655798837037!GO:0019843;rRNA binding;0.000613655798837037!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000624594269643056!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000628670428424577!GO:0030133;transport vesicle;0.000633961730545725!GO:0016049;cell growth;0.000659554111279256!GO:0007093;mitotic cell cycle checkpoint;0.000706705511474655!GO:0000059;protein import into nucleus, docking;0.000747447597044309!GO:0051920;peroxiredoxin activity;0.000748394895656242!GO:0019899;enzyme binding;0.000753435073504277!GO:0007050;cell cycle arrest;0.000865155555003464!GO:0007052;mitotic spindle organization and biogenesis;0.000953768437852422!GO:0003690;double-stranded DNA binding;0.000962329487556598!GO:0046483;heterocycle metabolic process;0.00107176520396539!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00111466599370265!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00113034771648029!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00113034771648029!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00113034771648029!GO:0018196;peptidyl-asparagine modification;0.00117939818135474!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00117939818135474!GO:0016741;transferase activity, transferring one-carbon groups;0.00118355968003639!GO:0044262;cellular carbohydrate metabolic process;0.00118371404184009!GO:0006695;cholesterol biosynthetic process;0.00120483526467198!GO:0008168;methyltransferase activity;0.00121186731637583!GO:0007059;chromosome segregation;0.00127626225109543!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00128546694616789!GO:0001558;regulation of cell growth;0.0012912132986735!GO:0030176;integral to endoplasmic reticulum membrane;0.00129504935005054!GO:0006383;transcription from RNA polymerase III promoter;0.00130826883925274!GO:0016363;nuclear matrix;0.00132630137142925!GO:0030036;actin cytoskeleton organization and biogenesis;0.00137199983262792!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00137199983262792!GO:0046489;phosphoinositide biosynthetic process;0.0014531479184815!GO:0030137;COPI-coated vesicle;0.00145472090879344!GO:0030880;RNA polymerase complex;0.00145484093094363!GO:0008180;signalosome;0.00157095970515754!GO:0044452;nucleolar part;0.00158900325858067!GO:0008033;tRNA processing;0.00167461236242557!GO:0006950;response to stress;0.0016762067686448!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00168701959098832!GO:0006310;DNA recombination;0.0017531501499198!GO:0065009;regulation of a molecular function;0.0018335748180734!GO:0015631;tubulin binding;0.00184014103984039!GO:0008186;RNA-dependent ATPase activity;0.00186361181612796!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00190795450347552!GO:0051287;NAD binding;0.00197735065776024!GO:0003678;DNA helicase activity;0.00201086406325921!GO:0048500;signal recognition particle;0.00205066431560971!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00210529656215974!GO:0015399;primary active transmembrane transporter activity;0.00210529656215974!GO:0003684;damaged DNA binding;0.0021282355157761!GO:0006979;response to oxidative stress;0.00217452414477591!GO:0046467;membrane lipid biosynthetic process;0.00217948762503891!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00217948762503891!GO:0048471;perinuclear region of cytoplasm;0.00221322350406728!GO:0007006;mitochondrial membrane organization and biogenesis;0.0025450670814571!GO:0015992;proton transport;0.0027146316020537!GO:0031902;late endosome membrane;0.00314404964322788!GO:0006818;hydrogen transport;0.00316960658772376!GO:0009116;nucleoside metabolic process;0.00324618804260329!GO:0051087;chaperone binding;0.00324674356888113!GO:0009112;nucleobase metabolic process;0.00333752625740566!GO:0031072;heat shock protein binding;0.00334503549114354!GO:0051540;metal cluster binding;0.00335673495656418!GO:0051536;iron-sulfur cluster binding;0.00335673495656418!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00338710479724733!GO:0000428;DNA-directed RNA polymerase complex;0.00338710479724733!GO:0008047;enzyme activator activity;0.00340202546575762!GO:0007017;microtubule-based process;0.00340617856990348!GO:0051168;nuclear export;0.00343211194124696!GO:0048522;positive regulation of cellular process;0.00343503051105818!GO:0022890;inorganic cation transmembrane transporter activity;0.00351150965046597!GO:0008312;7S RNA binding;0.00351284519896929!GO:0008632;apoptotic program;0.00352031582209147!GO:0005684;U2-dependent spliceosome;0.00352550509793539!GO:0051052;regulation of DNA metabolic process;0.00354349707051691!GO:0030658;transport vesicle membrane;0.00359080426456743!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00359868904205957!GO:0015002;heme-copper terminal oxidase activity;0.00359868904205957!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00359868904205957!GO:0004129;cytochrome-c oxidase activity;0.00359868904205957!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00367180786695091!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00367180786695091!GO:0004177;aminopeptidase activity;0.00383145750962991!GO:0004527;exonuclease activity;0.00398662185329603!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00410983130913675!GO:0045047;protein targeting to ER;0.00410983130913675!GO:0050789;regulation of biological process;0.00429197348771276!GO:0003746;translation elongation factor activity;0.00435030152779034!GO:0001726;ruffle;0.00446823943588608!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.00449535561712196!GO:0004004;ATP-dependent RNA helicase activity;0.00458391535968407!GO:0005869;dynactin complex;0.00484447757600386!GO:0016481;negative regulation of transcription;0.00487641401274056!GO:0003729;mRNA binding;0.00489702533257639!GO:0006891;intra-Golgi vesicle-mediated transport;0.00492198552498756!GO:0016197;endosome transport;0.00513390140562545!GO:0006082;organic acid metabolic process;0.00549249305842545!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00555670497754397!GO:0035258;steroid hormone receptor binding;0.00560102732205178!GO:0019752;carboxylic acid metabolic process;0.00562126186840871!GO:0005876;spindle microtubule;0.0056235123443952!GO:0017166;vinculin binding;0.0056472462435902!GO:0031124;mRNA 3'-end processing;0.00566591298559497!GO:0032984;macromolecular complex disassembly;0.00585480526053957!GO:0050662;coenzyme binding;0.00594698602734182!GO:0005637;nuclear inner membrane;0.00596277204943723!GO:0043624;cellular protein complex disassembly;0.00611577691545583!GO:0000082;G1/S transition of mitotic cell cycle;0.00611984329330499!GO:0007243;protein kinase cascade;0.00614468709372935!GO:0048487;beta-tubulin binding;0.00614982417784303!GO:0030134;ER to Golgi transport vesicle;0.00617050820247851!GO:0006650;glycerophospholipid metabolic process;0.00617956301702049!GO:0051252;regulation of RNA metabolic process;0.00619091419491083!GO:0030118;clathrin coat;0.00636706183594671!GO:0006220;pyrimidine nucleotide metabolic process;0.00666533172631454!GO:0000049;tRNA binding;0.00670304919195027!GO:0030029;actin filament-based process;0.00671500668129348!GO:0030521;androgen receptor signaling pathway;0.00690827610020505!GO:0030132;clathrin coat of coated pit;0.00692926037288208!GO:0030659;cytoplasmic vesicle membrane;0.00730037129990435!GO:0006289;nucleotide-excision repair;0.00735771881085286!GO:0043022;ribosome binding;0.00741093615394805!GO:0043488;regulation of mRNA stability;0.00741093615394805!GO:0043487;regulation of RNA stability;0.00741093615394805!GO:0006497;protein amino acid lipidation;0.00749646035267595!GO:0008022;protein C-terminus binding;0.00753384920268007!GO:0022411;cellular component disassembly;0.00755052486418319!GO:0005096;GTPase activator activity;0.00758304204212507!GO:0006595;polyamine metabolic process;0.00763281865617598!GO:0030027;lamellipodium;0.00784040569721105!GO:0008139;nuclear localization sequence binding;0.00805352737971053!GO:0051539;4 iron, 4 sulfur cluster binding;0.00810877648074031!GO:0030127;COPII vesicle coat;0.0082399247360587!GO:0012507;ER to Golgi transport vesicle membrane;0.0082399247360587!GO:0000922;spindle pole;0.00836256428533129!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00840907335000132!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00840907335000132!GO:0000096;sulfur amino acid metabolic process;0.00849330674509957!GO:0016044;membrane organization and biogenesis;0.00900755374450094!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0090171151489345!GO:0007264;small GTPase mediated signal transduction;0.00925284682959332!GO:0003682;chromatin binding;0.00927472902454108!GO:0006402;mRNA catabolic process;0.00935401310139036!GO:0030660;Golgi-associated vesicle membrane;0.0094360713622314!GO:0006740;NADPH regeneration;0.00999856096474668!GO:0006098;pentose-phosphate shunt;0.00999856096474668!GO:0043241;protein complex disassembly;0.0103287109751621!GO:0006778;porphyrin metabolic process;0.0105752418623533!GO:0033013;tetrapyrrole metabolic process;0.0105752418623533!GO:0016272;prefoldin complex;0.0106653864733015!GO:0006352;transcription initiation;0.0106710410699545!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0108363600317315!GO:0031901;early endosome membrane;0.0108363600317315!GO:0007021;tubulin folding;0.0112862151901505!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0115463350639004!GO:0005862;muscle thin filament tropomyosin;0.0116295272145992!GO:0019206;nucleoside kinase activity;0.0119907317967993!GO:0005774;vacuolar membrane;0.0119907317967993!GO:0005832;chaperonin-containing T-complex;0.0119907317967993!GO:0006007;glucose catabolic process;0.0123437810746497!GO:0016251;general RNA polymerase II transcription factor activity;0.0125033253705766!GO:0033673;negative regulation of kinase activity;0.0126348119902012!GO:0006469;negative regulation of protein kinase activity;0.0126348119902012!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0128328241419957!GO:0030503;regulation of cell redox homeostasis;0.0128942874905783!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0128942874905783!GO:0043492;ATPase activity, coupled to movement of substances;0.0152733511551459!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0153137739501535!GO:0000339;RNA cap binding;0.0160472050520738!GO:0008092;cytoskeletal protein binding;0.0162206375467645!GO:0044433;cytoplasmic vesicle part;0.0163197889144549!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0164023109217105!GO:0051348;negative regulation of transferase activity;0.0166360876104253!GO:0006144;purine base metabolic process;0.0168291681886069!GO:0045045;secretory pathway;0.0168360746621984!GO:0006892;post-Golgi vesicle-mediated transport;0.0169752495176092!GO:0048037;cofactor binding;0.0169752495176092!GO:0008652;amino acid biosynthetic process;0.0169889780151955!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0173746495887316!GO:0030119;AP-type membrane coat adaptor complex;0.017474965637776!GO:0003711;transcription elongation regulator activity;0.017474965637776!GO:0031418;L-ascorbic acid binding;0.0175378118157476!GO:0006401;RNA catabolic process;0.0177221155876758!GO:0000910;cytokinesis;0.0177235531170624!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0178630127654622!GO:0000152;nuclear ubiquitin ligase complex;0.0178843872324538!GO:0006984;ER-nuclear signaling pathway;0.0185480400855129!GO:0006509;membrane protein ectodomain proteolysis;0.0186960992272244!GO:0033619;membrane protein proteolysis;0.0186960992272244!GO:0006118;electron transport;0.0188836190465356!GO:0005680;anaphase-promoting complex;0.0189292280431328!GO:0032508;DNA duplex unwinding;0.0189681575781097!GO:0032392;DNA geometric change;0.0189681575781097!GO:0050681;androgen receptor binding;0.0190875857805239!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0192036524837706!GO:0031123;RNA 3'-end processing;0.019243184241842!GO:0031577;spindle checkpoint;0.0197728306459874!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0201378221307565!GO:0042158;lipoprotein biosynthetic process;0.0202128052651647!GO:0004518;nuclease activity;0.0205727645171062!GO:0009119;ribonucleoside metabolic process;0.0209894619305415!GO:0000209;protein polyubiquitination;0.0210059691439924!GO:0043433;negative regulation of transcription factor activity;0.0212460017322571!GO:0000178;exosome (RNase complex);0.0213047434464518!GO:0016584;nucleosome positioning;0.0215551920026347!GO:0006506;GPI anchor biosynthetic process;0.0217313051411212!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0224386283692625!GO:0006520;amino acid metabolic process;0.0225325543851365!GO:0050790;regulation of catalytic activity;0.0226391342975822!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0227991458227618!GO:0007040;lysosome organization and biogenesis;0.0230253300741472!GO:0006268;DNA unwinding during replication;0.0238184853261168!GO:0006733;oxidoreduction coenzyme metabolic process;0.0238184853261168!GO:0031625;ubiquitin protein ligase binding;0.0238723434024619!GO:0004003;ATP-dependent DNA helicase activity;0.0242623169161291!GO:0004674;protein serine/threonine kinase activity;0.0243600434511624!GO:0040008;regulation of growth;0.0248222343195641!GO:0016860;intramolecular oxidoreductase activity;0.0254120556385169!GO:0030125;clathrin vesicle coat;0.0254120556385169!GO:0030665;clathrin coated vesicle membrane;0.0254120556385169!GO:0031371;ubiquitin conjugating enzyme complex;0.0255254205155649!GO:0006378;mRNA polyadenylation;0.0259412431203728!GO:0044437;vacuolar part;0.0263488920508202!GO:0008538;proteasome activator activity;0.0265995109919614!GO:0005875;microtubule associated complex;0.0266756518767099!GO:0007033;vacuole organization and biogenesis;0.0269618713347749!GO:0012506;vesicle membrane;0.027076878167191!GO:0051128;regulation of cellular component organization and biogenesis;0.0271963484198954!GO:0030131;clathrin adaptor complex;0.027482872055231!GO:0042168;heme metabolic process;0.0275704570288222!GO:0030508;thiol-disulfide exchange intermediate activity;0.0282889161676924!GO:0019798;procollagen-proline dioxygenase activity;0.0283381075928383!GO:0007569;cell aging;0.0287429498600901!GO:0006607;NLS-bearing substrate import into nucleus;0.0287429498600901!GO:0031543;peptidyl-proline dioxygenase activity;0.0292180442665742!GO:0008408;3'-5' exonuclease activity;0.0293937273542606!GO:0008601;protein phosphatase type 2A regulator activity;0.0300959158266178!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0300959158266178!GO:0008243;plasminogen activator activity;0.0302746560157802!GO:0008147;structural constituent of bone;0.0302938558915995!GO:0005758;mitochondrial intermembrane space;0.0306951636860333!GO:0006505;GPI anchor metabolic process;0.0309083393699004!GO:0031970;organelle envelope lumen;0.0310289578259119!GO:0030518;steroid hormone receptor signaling pathway;0.0313144314909086!GO:0031529;ruffle organization and biogenesis;0.0313275312305493!GO:0007034;vacuolar transport;0.0313275312305493!GO:0030433;ER-associated protein catabolic process;0.0314214608228165!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0314214608228165!GO:0005784;translocon complex;0.0315996018850715!GO:0016408;C-acyltransferase activity;0.0323385137933176!GO:0007346;regulation of progression through mitotic cell cycle;0.0323740844144364!GO:0045792;negative regulation of cell size;0.0329132804474121!GO:0009303;rRNA transcription;0.0329132804474121!GO:0006779;porphyrin biosynthetic process;0.0331319332145747!GO:0033014;tetrapyrrole biosynthetic process;0.0331319332145747!GO:0006739;NADP metabolic process;0.0332389316646937!GO:0006275;regulation of DNA replication;0.0338341185856235!GO:0006376;mRNA splice site selection;0.0339232256730213!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0339232256730213!GO:0005669;transcription factor TFIID complex;0.0347533326888122!GO:0030496;midbody;0.0347849739576067!GO:0015036;disulfide oxidoreductase activity;0.0356255350843803!GO:0009124;nucleoside monophosphate biosynthetic process;0.0357885760012218!GO:0009123;nucleoside monophosphate metabolic process;0.0357885760012218!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0371488288608659!GO:0005765;lysosomal membrane;0.0372490880889149!GO:0000159;protein phosphatase type 2A complex;0.0373679340808034!GO:0003756;protein disulfide isomerase activity;0.0373679340808034!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0373679340808034!GO:0006611;protein export from nucleus;0.0373782456128018!GO:0030384;phosphoinositide metabolic process;0.0376416331505706!GO:0000287;magnesium ion binding;0.0379680380182949!GO:0030911;TPR domain binding;0.0380646991325221!GO:0016125;sterol metabolic process;0.0380733787627195!GO:0043189;H4/H2A histone acetyltransferase complex;0.0381114301029602!GO:0051101;regulation of DNA binding;0.0392593678055162!GO:0050811;GABA receptor binding;0.0404360585178015!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0404360585178015!GO:0010257;NADH dehydrogenase complex assembly;0.0404360585178015!GO:0033108;mitochondrial respiratory chain complex assembly;0.0404360585178015!GO:0030308;negative regulation of cell growth;0.0406369334782707!GO:0046128;purine ribonucleoside metabolic process;0.0410931283327255!GO:0042278;purine nucleoside metabolic process;0.0410931283327255!GO:0043130;ubiquitin binding;0.0412169695406561!GO:0032182;small conjugating protein binding;0.0412169695406561!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0412297049198453!GO:0006405;RNA export from nucleus;0.0412297049198453!GO:0003923;GPI-anchor transamidase activity;0.0412297049198453!GO:0016255;attachment of GPI anchor to protein;0.0412297049198453!GO:0042765;GPI-anchor transamidase complex;0.0412297049198453!GO:0042393;histone binding;0.0421715181268131!GO:0009262;deoxyribonucleotide metabolic process;0.0430509871557628!GO:0006213;pyrimidine nucleoside metabolic process;0.0434385375935131!GO:0042770;DNA damage response, signal transduction;0.0442473602407659!GO:0030032;lamellipodium biogenesis;0.0445414750761824!GO:0006720;isoprenoid metabolic process;0.0445414750761824!GO:0000819;sister chromatid segregation;0.0446994445680805!GO:0006769;nicotinamide metabolic process;0.0450427218408582!GO:0047485;protein N-terminus binding;0.045093138184012!GO:0035267;NuA4 histone acetyltransferase complex;0.0456414297187554!GO:0005099;Ras GTPase activator activity;0.0458343073796803!GO:0009967;positive regulation of signal transduction;0.0462577306543234!GO:0030031;cell projection biogenesis;0.0463135164657396!GO:0033559;unsaturated fatty acid metabolic process;0.0463555292175582!GO:0006636;unsaturated fatty acid biosynthetic process;0.0463555292175582!GO:0000118;histone deacetylase complex;0.0472043602812017!GO:0000070;mitotic sister chromatid segregation;0.0477957774055371!GO:0009066;aspartate family amino acid metabolic process;0.0495749810202001!GO:0006354;RNA elongation;0.0499520112279791 | |||
|sample_id=11466 | |sample_id=11466 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=uterus | |sample_tissue=uterus | ||
|top_motifs=CDC5L:1.41879385178;GFI1:1.33845119361;GZF1:1.18336733714;POU3F1..4:1.16138884358;YY1:1.14657233307;NR1H4:1.10379564439;ZNF238:1.10347714004;ALX4:1.07869444653;HOX{A4,D4}:1.07160589603;TBP:0.76532407571;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.760020609242;HSF1,2:0.699199251567;TAL1_TCF{3,4,12}:0.675824228093;PBX1:0.672618181434;TBX4,5:0.662071339057;MYBL2:0.649780130419;GFI1B:0.629016917271;HMX1:0.626900549327;NFIX:0.611499956308;PDX1:0.610180970171;SRF:0.60905700136;ADNP_IRX_SIX_ZHX:0.604182873958;E2F1..5:0.589463441479;TEAD1:0.584798948872;TLX1..3_NFIC{dimer}:0.581741014092;FOXQ1:0.574200342849;NKX2-2,8:0.556311072171;NR3C1:0.53198009422;NKX3-1:0.522923625998;EN1,2:0.518563433697;ELK1,4_GABP{A,B1}:0.50703914767;ATF6:0.500993205583;HES1:0.46147531036;IKZF1:0.44560289427;HBP1_HMGB_SSRP1_UBTF:0.445290017562;NR5A1,2:0.443944161464;NFE2L2:0.437102257822;NKX6-1,2:0.43415551284;BACH2:0.422659068071;NFY{A,B,C}:0.415334044793;TFCP2:0.411642892354;TFAP4:0.410000972618;SMAD1..7,9:0.409775169599;MAFB:0.384952692643;ZBTB6:0.38397186199;GTF2I:0.372599842976;ZNF143:0.368652992151;HOX{A5,B5}:0.337680051946;CEBPA,B_DDIT3:0.326881066081;EBF1:0.315110454523;FOS_FOS{B,L1}_JUN{B,D}:0.313486562749;MZF1:0.308760534536;NFATC1..3:0.304371362607;NFE2:0.303976320462;NFE2L1:0.299679808619;KLF4:0.297060019556;GCM1,2:0.29138650664;HAND1,2:0.291356843913;RXR{A,B,G}:0.287342939436;FOSL2:0.279730190476;LHX3,4:0.263399643082;ESR1:0.261217671975;GTF2A1,2:0.255012179525;bHLH_family:0.251385185332;MYB:0.245019631421;STAT5{A,B}:0.236854779763;ARID5B:0.230116353489;POU5F1:0.227076987257;UFEwm:0.22435133114;ZIC1..3:0.213985710695;T:0.205080377292;AHR_ARNT_ARNT2:0.204758605915;NHLH1,2:0.203766583978;LEF1_TCF7_TCF7L1,2:0.194975637573;XBP1:0.179789440596;RFX1:0.168403126002;CRX:0.167203522918;SPZ1:0.166185000151;HLF:0.15200609777;ESRRA:0.151007306333;XCPE1{core}:0.147143256815;NKX3-2:0.146374847262;SOX17:0.124684842188;ZNF423:0.124499085313;ZNF148:0.12306577192;TLX2:0.120955012879;PRRX1,2:0.115688946177;HOX{A6,A7,B6,B7}:0.111239227436;PAX1,9:0.102283299128;JUN:0.101040757432;HOXA9_MEIS1:0.0818837085957;POU2F1..3:0.0696866803372;MYFfamily:0.0597604598945;HNF1A:0.0414624067557;PRDM1:0.0357580974616;POU1F1:0.025266355815;HIF1A:0.0184378341354;NRF1:0.0101914959191;DMAP1_NCOR{1,2}_SMARC:-0.0019964166564;STAT1,3:-0.0283306361704;SP1:-0.0327343304888;HNF4A_NR2F1,2:-0.033789067603;NANOG:-0.0344472497792;ELF1,2,4:-0.0408987959316;GLI1..3:-0.0436882909501;TEF:-0.0473684923778;SREBF1,2:-0.0522911911019;AIRE:-0.0540823491407;OCT4_SOX2{dimer}:-0.0579544535993;AR:-0.0639424264675;TP53:-0.0718311623861;SOX{8,9,10}:-0.0739907679204;DBP:-0.0795353325495;POU6F1:-0.0857433925889;FOXD3:-0.114567727967;HIC1:-0.125418872187;ATF2:-0.125872520615;PATZ1:-0.130112635707;FOXA2:-0.135870059995;RUNX1..3:-0.139958906935;RREB1:-0.154519488475;MEF2{A,B,C,D}:-0.169718745288;RXRA_VDR{dimer}:-0.176248972851;PPARG:-0.181918811808;TFAP2{A,C}:-0.183632907544;MAZ:-0.186562461773;PAX3,7:-0.196898528835;ZBTB16:-0.197700334297;GATA4:-0.214460431244;PAX4:-0.223488594128;TFDP1:-0.243127627434;IRF1,2:-0.245671928712;RFX2..5_RFXANK_RFXAP:-0.250941565658;NANOG{mouse}:-0.261935396724;ZNF384:-0.264944822037;REST:-0.266522596358;NKX2-3_NKX2-5:-0.279395700822;CREB1:-0.298532186965;CDX1,2,4:-0.304621731957;FOXL1:-0.337776107795;IRF7:-0.35114841385;FOXM1:-0.374144901363;PAX2:-0.383959094495;LMO2:-0.385841213477;PAX5:-0.408864695073;ETS1,2:-0.411011448715;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.411841872629;NFKB1_REL_RELA:-0.416757033418;ATF5_CREB3:-0.418723445097;FOXO1,3,4:-0.424583538161;CUX2:-0.434602560631;MED-1{core}:-0.435744675296;PAX8:-0.442429583397;STAT2,4,6:-0.447250762386;TGIF1:-0.448009073561;NFIL3:-0.452005189907;GATA6:-0.460309723686;SPIB:-0.462225109812;EGR1..3:-0.486994173542;FOX{I1,J2}:-0.494592334815;ONECUT1,2:-0.4987471587;EVI1:-0.50105268095;SPI1:-0.508773188173;NKX2-1,4:-0.517579138581;NR6A1:-0.566497899305;PAX6:-0.588803662518;SOX5:-0.597287362767;RORA:-0.598296942008;MTE{core}:-0.629089726699;RBPJ:-0.633789577858;SOX2:-0.63638329104;MTF1:-0.637745895105;ALX1:-0.638308081539;ZFP161:-0.64139001026;SNAI1..3:-0.646650685336;MYOD1:-0.672118880309;TOPORS:-0.675092975897;FOXP1:-0.696579982207;TFAP2B:-0.708754402066;EP300:-0.75974355078;FOXN1:-0.78325080509;FOX{D1,D2}:-0.800618353094;HMGA1,2:-0.802409351416;ATF4:-0.813078920658;VSX1,2:-0.854295885955;ZEB1:-0.95670191606;FOXP3:-0.987307989136;FOX{F1,F2,J1}:-1.00819778388;BREu{core}:-1.03026283332;PITX1..3:-1.0875200706;IKZF2:-1.09526003635;BPTF:-1.31064392547 | |top_motifs=CDC5L:1.41879385178;GFI1:1.33845119361;GZF1:1.18336733714;POU3F1..4:1.16138884358;YY1:1.14657233307;NR1H4:1.10379564439;ZNF238:1.10347714004;ALX4:1.07869444653;HOX{A4,D4}:1.07160589603;TBP:0.76532407571;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.760020609242;HSF1,2:0.699199251567;TAL1_TCF{3,4,12}:0.675824228093;PBX1:0.672618181434;TBX4,5:0.662071339057;MYBL2:0.649780130419;GFI1B:0.629016917271;HMX1:0.626900549327;NFIX:0.611499956308;PDX1:0.610180970171;SRF:0.60905700136;ADNP_IRX_SIX_ZHX:0.604182873958;E2F1..5:0.589463441479;TEAD1:0.584798948872;TLX1..3_NFIC{dimer}:0.581741014092;FOXQ1:0.574200342849;NKX2-2,8:0.556311072171;NR3C1:0.53198009422;NKX3-1:0.522923625998;EN1,2:0.518563433697;ELK1,4_GABP{A,B1}:0.50703914767;ATF6:0.500993205583;HES1:0.46147531036;IKZF1:0.44560289427;HBP1_HMGB_SSRP1_UBTF:0.445290017562;NR5A1,2:0.443944161464;NFE2L2:0.437102257822;NKX6-1,2:0.43415551284;BACH2:0.422659068071;NFY{A,B,C}:0.415334044793;TFCP2:0.411642892354;TFAP4:0.410000972618;SMAD1..7,9:0.409775169599;MAFB:0.384952692643;ZBTB6:0.38397186199;GTF2I:0.372599842976;ZNF143:0.368652992151;HOX{A5,B5}:0.337680051946;CEBPA,B_DDIT3:0.326881066081;EBF1:0.315110454523;FOS_FOS{B,L1}_JUN{B,D}:0.313486562749;MZF1:0.308760534536;NFATC1..3:0.304371362607;NFE2:0.303976320462;NFE2L1:0.299679808619;KLF4:0.297060019556;GCM1,2:0.29138650664;HAND1,2:0.291356843913;RXR{A,B,G}:0.287342939436;FOSL2:0.279730190476;LHX3,4:0.263399643082;ESR1:0.261217671975;GTF2A1,2:0.255012179525;bHLH_family:0.251385185332;MYB:0.245019631421;STAT5{A,B}:0.236854779763;ARID5B:0.230116353489;POU5F1:0.227076987257;UFEwm:0.22435133114;ZIC1..3:0.213985710695;T:0.205080377292;AHR_ARNT_ARNT2:0.204758605915;NHLH1,2:0.203766583978;LEF1_TCF7_TCF7L1,2:0.194975637573;XBP1:0.179789440596;RFX1:0.168403126002;CRX:0.167203522918;SPZ1:0.166185000151;HLF:0.15200609777;ESRRA:0.151007306333;XCPE1{core}:0.147143256815;NKX3-2:0.146374847262;SOX17:0.124684842188;ZNF423:0.124499085313;ZNF148:0.12306577192;TLX2:0.120955012879;PRRX1,2:0.115688946177;HOX{A6,A7,B6,B7}:0.111239227436;PAX1,9:0.102283299128;JUN:0.101040757432;HOXA9_MEIS1:0.0818837085957;POU2F1..3:0.0696866803372;MYFfamily:0.0597604598945;HNF1A:0.0414624067557;PRDM1:0.0357580974616;POU1F1:0.025266355815;HIF1A:0.0184378341354;NRF1:0.0101914959191;DMAP1_NCOR{1,2}_SMARC:-0.0019964166564;STAT1,3:-0.0283306361704;SP1:-0.0327343304888;HNF4A_NR2F1,2:-0.033789067603;NANOG:-0.0344472497792;ELF1,2,4:-0.0408987959316;GLI1..3:-0.0436882909501;TEF:-0.0473684923778;SREBF1,2:-0.0522911911019;AIRE:-0.0540823491407;OCT4_SOX2{dimer}:-0.0579544535993;AR:-0.0639424264675;TP53:-0.0718311623861;SOX{8,9,10}:-0.0739907679204;DBP:-0.0795353325495;POU6F1:-0.0857433925889;FOXD3:-0.114567727967;HIC1:-0.125418872187;ATF2:-0.125872520615;PATZ1:-0.130112635707;FOXA2:-0.135870059995;RUNX1..3:-0.139958906935;RREB1:-0.154519488475;MEF2{A,B,C,D}:-0.169718745288;RXRA_VDR{dimer}:-0.176248972851;PPARG:-0.181918811808;TFAP2{A,C}:-0.183632907544;MAZ:-0.186562461773;PAX3,7:-0.196898528835;ZBTB16:-0.197700334297;GATA4:-0.214460431244;PAX4:-0.223488594128;TFDP1:-0.243127627434;IRF1,2:-0.245671928712;RFX2..5_RFXANK_RFXAP:-0.250941565658;NANOG{mouse}:-0.261935396724;ZNF384:-0.264944822037;REST:-0.266522596358;NKX2-3_NKX2-5:-0.279395700822;CREB1:-0.298532186965;CDX1,2,4:-0.304621731957;FOXL1:-0.337776107795;IRF7:-0.35114841385;FOXM1:-0.374144901363;PAX2:-0.383959094495;LMO2:-0.385841213477;PAX5:-0.408864695073;ETS1,2:-0.411011448715;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.411841872629;NFKB1_REL_RELA:-0.416757033418;ATF5_CREB3:-0.418723445097;FOXO1,3,4:-0.424583538161;CUX2:-0.434602560631;MED-1{core}:-0.435744675296;PAX8:-0.442429583397;STAT2,4,6:-0.447250762386;TGIF1:-0.448009073561;NFIL3:-0.452005189907;GATA6:-0.460309723686;SPIB:-0.462225109812;EGR1..3:-0.486994173542;FOX{I1,J2}:-0.494592334815;ONECUT1,2:-0.4987471587;EVI1:-0.50105268095;SPI1:-0.508773188173;NKX2-1,4:-0.517579138581;NR6A1:-0.566497899305;PAX6:-0.588803662518;SOX5:-0.597287362767;RORA:-0.598296942008;MTE{core}:-0.629089726699;RBPJ:-0.633789577858;SOX2:-0.63638329104;MTF1:-0.637745895105;ALX1:-0.638308081539;ZFP161:-0.64139001026;SNAI1..3:-0.646650685336;MYOD1:-0.672118880309;TOPORS:-0.675092975897;FOXP1:-0.696579982207;TFAP2B:-0.708754402066;EP300:-0.75974355078;FOXN1:-0.78325080509;FOX{D1,D2}:-0.800618353094;HMGA1,2:-0.802409351416;ATF4:-0.813078920658;VSX1,2:-0.854295885955;ZEB1:-0.95670191606;FOXP3:-0.987307989136;FOX{F1,F2,J1}:-1.00819778388;BREu{core}:-1.03026283332;PITX1..3:-1.0875200706;IKZF2:-1.09526003635;BPTF:-1.31064392547 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11466-119B8;search_select_hide=table117:FF:11466-119B8 | |||
}} | }} | ||
Latest revision as of 18:03, 4 June 2020
| Name: | Smooth Muscle Cells - Uterine, donor3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11927 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
|
| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11927
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11927
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.486 |
| 10 | 10 | 0.139 |
| 100 | 100 | 0.698 |
| 101 | 101 | 0.681 |
| 102 | 102 | 0.902 |
| 103 | 103 | 0.51 |
| 104 | 104 | 0.627 |
| 105 | 105 | 0.356 |
| 106 | 106 | 0.999 |
| 107 | 107 | 0.156 |
| 108 | 108 | 0.211 |
| 109 | 109 | 0.0612 |
| 11 | 11 | 0.156 |
| 110 | 110 | 9.92908e-4 |
| 111 | 111 | 0.197 |
| 112 | 112 | 0.742 |
| 113 | 113 | 0.00287 |
| 114 | 114 | 0.483 |
| 115 | 115 | 0.914 |
| 116 | 116 | 0.277 |
| 117 | 117 | 0.0167 |
| 118 | 118 | 0.582 |
| 119 | 119 | 0.988 |
| 12 | 12 | 0.949 |
| 120 | 120 | 0.116 |
| 121 | 121 | 0.951 |
| 122 | 122 | 0.432 |
| 123 | 123 | 1.13479e-4 |
| 124 | 124 | 0.893 |
| 125 | 125 | 0.53 |
| 126 | 126 | 0.452 |
| 127 | 127 | 0.678 |
| 128 | 128 | 0.761 |
| 129 | 129 | 0.963 |
| 13 | 13 | 0.178 |
| 130 | 130 | 0.00823 |
| 131 | 131 | 0.902 |
| 132 | 132 | 0.748 |
| 133 | 133 | 0.336 |
| 134 | 134 | 0.439 |
| 135 | 135 | 0.72 |
| 136 | 136 | 0.838 |
| 137 | 137 | 0.464 |
| 138 | 138 | 0.137 |
| 139 | 139 | 0.00618 |
| 14 | 14 | 0.222 |
| 140 | 140 | 0.114 |
| 141 | 141 | 0.37 |
| 142 | 142 | 0.356 |
| 143 | 143 | 0.969 |
| 144 | 144 | 0.418 |
| 145 | 145 | 0.523 |
| 146 | 146 | 0.397 |
| 147 | 147 | 0.115 |
| 148 | 148 | 0.875 |
| 149 | 149 | 0.425 |
| 15 | 15 | 0.679 |
| 150 | 150 | 0.448 |
| 151 | 151 | 0.569 |
| 152 | 152 | 0.495 |
| 153 | 153 | 0.242 |
| 154 | 154 | 0.214 |
| 155 | 155 | 0.00326 |
| 156 | 156 | 0.857 |
| 157 | 157 | 0.41 |
| 158 | 158 | 0.00134 |
| 159 | 159 | 0.0379 |
| 16 | 16 | 0.083 |
| 160 | 160 | 0.257 |
| 161 | 161 | 0.518 |
| 162 | 162 | 0.813 |
| 163 | 163 | 0.82 |
| 164 | 164 | 0.977 |
| 165 | 165 | 0.773 |
| 166 | 166 | 0.409 |
| 167 | 167 | 0.454 |
| 168 | 168 | 0.979 |
| 169 | 169 | 0.0821 |
| 17 | 17 | 0.935 |
| 18 | 18 | 0.142 |
| 19 | 19 | 0.0876 |
| 2 | 2 | 0.555 |
| 20 | 20 | 0.612 |
| 21 | 21 | 0.596 |
| 22 | 22 | 0.122 |
| 23 | 23 | 0.407 |
| 24 | 24 | 0.113 |
| 25 | 25 | 0.221 |
| 26 | 26 | 0.276 |
| 27 | 27 | 0.438 |
| 28 | 28 | 0.205 |
| 29 | 29 | 0.169 |
| 3 | 3 | 0.38 |
| 30 | 30 | 0.278 |
| 31 | 31 | 0.711 |
| 32 | 32 | 0.349 |
| 33 | 33 | 0.326 |
| 34 | 34 | 0.49 |
| 35 | 35 | 0.86 |
| 36 | 36 | 0.378 |
| 37 | 37 | 0.0948 |
| 38 | 38 | 0.675 |
| 39 | 39 | 0.244 |
| 4 | 4 | 0.394 |
| 40 | 40 | 0.813 |
| 41 | 41 | 0.12 |
| 42 | 42 | 0.47 |
| 43 | 43 | 0.547 |
| 44 | 44 | 0.937 |
| 45 | 45 | 0.546 |
| 46 | 46 | 0.36 |
| 47 | 47 | 0.755 |
| 48 | 48 | 0.293 |
| 49 | 49 | 0.523 |
| 5 | 5 | 0.596 |
| 50 | 50 | 0.598 |
| 51 | 51 | 0.376 |
| 52 | 52 | 0.44 |
| 53 | 53 | 0.0268 |
| 54 | 54 | 0.912 |
| 55 | 55 | 0.897 |
| 56 | 56 | 0.704 |
| 57 | 57 | 0.473 |
| 58 | 58 | 0.533 |
| 59 | 59 | 0.399 |
| 6 | 6 | 0.302 |
| 60 | 60 | 0.618 |
| 61 | 61 | 0.957 |
| 62 | 62 | 0.873 |
| 63 | 63 | 0.968 |
| 64 | 64 | 0.539 |
| 65 | 65 | 0.578 |
| 66 | 66 | 0.0927 |
| 67 | 67 | 0.599 |
| 68 | 68 | 0.277 |
| 69 | 69 | 0.471 |
| 7 | 7 | 0.356 |
| 70 | 70 | 0.476 |
| 71 | 71 | 0.0735 |
| 72 | 72 | 0.917 |
| 73 | 73 | 0.218 |
| 74 | 74 | 0.473 |
| 75 | 75 | 0.151 |
| 76 | 76 | 0.232 |
| 77 | 77 | 0.153 |
| 78 | 78 | 0.167 |
| 79 | 79 | 0.743 |
| 8 | 8 | 0.408 |
| 80 | 80 | 0.415 |
| 81 | 81 | 0.766 |
| 82 | 82 | 0.405 |
| 83 | 83 | 0.295 |
| 84 | 84 | 0.754 |
| 85 | 85 | 0.145 |
| 86 | 86 | 0.54 |
| 87 | 87 | 0.0102 |
| 88 | 88 | 0.301 |
| 89 | 89 | 0.169 |
| 9 | 9 | 0.184 |
| 90 | 90 | 0.745 |
| 91 | 91 | 0.119 |
| 92 | 92 | 0.43 |
| 93 | 93 | 0.732 |
| 94 | 94 | 0.79 |
| 95 | 95 | 0.201 |
| 96 | 96 | 0.644 |
| 97 | 97 | 0.417 |
| 98 | 98 | 0.555 |
| 99 | 99 | 0.0164 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11927
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000185 human uterine smooth muscle cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0002601 (uterine smooth muscle cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000995 (uterus)
0003134 (female reproductive organ)
0005156 (reproductive structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003133 (reproductive organ)
0003975 (internal female genitalia)
0004175 (internal genitalia)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0000474 (female reproductive system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000185 (human uterine smooth muscle cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)
