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{{f5samples
{{f5samples
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|DRA_sample_Accession=CAGE@SAMD00005241
|accession_numbers=CAGE;DRX008097;DRR008969;DRZ000394;DRZ001779
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005241
|accession_numbers=CAGE;DRX008097;DRR008969;DRZ000394;DRZ001779;DRZ011744;DRZ013129
|accession_numbers_RNASeq=sRNA-Seq;DRX037183;DRR041549;DRZ007191
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|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000325,CL:0000255,CL:0000136,CL:0002615
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000325,CL:0000255,CL:0000136,CL:0002615
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|fonse_treatment_closure=
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|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520omental%252c%2520donor1.CNhs11054.11473-119C6.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520omental%252c%2520donor1.CNhs11054.11473-119C6.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520omental%252c%2520donor1.CNhs11054.11473-119C6.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520omental%252c%2520donor1.CNhs11054.11473-119C6.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520omental%252c%2520donor1.CNhs11054.11473-119C6.hg38.nobarcode.ctss.bed.gz
|id=FF:11473-119C6
|id=FF:11473-119C6
|is_a=EFO:0002091;;FF:0000039
|is_a=EFO:0002091;;FF:0000039
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|library_id=CNhs11054
|library_id=CNhs11054
|library_id_phase_based=2:CNhs11054
|library_id_phase_based=2:CNhs11054
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11473
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10012.CGATGT.11473
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11473
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10012.CGATGT.11473
|name=Adipocyte - omental, donor1
|name=Adipocyte - omental, donor1
|namespace=FANTOM5
|namespace=FANTOM5
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|profile_rnaseq=
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|sample_category=primary cells
Line 91: Line 106:
|top_motifs=IKZF1:2.56973078124;GZF1:2.44935904462;SRF:2.0620361035;EBF1:2.03559188307;MYBL2:2.00408596847;HIF1A:2.00178844074;TEF:1.90890462459;HES1:1.87989008662;FOXL1:1.86628049992;MAFB:1.85194849542;HMGA1,2:1.75450211178;NKX3-1:1.68839623809;TEAD1:1.6744233037;ZNF238:1.66105551654;NR3C1:1.65621617312;GCM1,2:1.63831487074;SMAD1..7,9:1.62722417001;XBP1:1.62060583572;ATF6:1.61613125656;FOXO1,3,4:1.53904364618;RXRA_VDR{dimer}:1.49025090435;TAL1_TCF{3,4,12}:1.45142461236;UFEwm:1.44446317247;NKX2-2,8:1.381149845;ESR1:1.3597800941;NFE2L1:1.3531667175;NFATC1..3:1.34590293762;NKX2-1,4:1.30918779801;ZNF423:1.30556032344;TLX1..3_NFIC{dimer}:1.28151411265;HOX{A5,B5}:1.27635824669;GLI1..3:1.27370420603;EVI1:1.27365798175;SPZ1:1.25702818364;HOX{A6,A7,B6,B7}:1.19339508726;TFAP4:1.19188925701;KLF4:1.11812595654;NHLH1,2:1.11319172169;MTE{core}:1.11277903394;MAZ:1.11261491236;AR:1.08864101019;TP53:1.07744022001;LHX3,4:1.07735339435;DBP:1.07161682948;HSF1,2:1.03701156296;NFIX:0.973030912043;HOX{A4,D4}:0.950631694511;GTF2I:0.895094524407;MTF1:0.800393448396;GATA4:0.758536187057;CDC5L:0.732787187157;bHLH_family:0.722831184322;HMX1:0.717769106334;TFAP2{A,C}:0.717395799311;TFCP2:0.700391116728;GTF2A1,2:0.66993205707;HIC1:0.665809500798;ESRRA:0.645043852218;FOXA2:0.631543816002;ZNF148:0.631092784529;PAX1,9:0.625626857497;STAT1,3:0.622686959149;MYFfamily:0.599619249793;STAT2,4,6:0.59053424145;SOX5:0.584304330327;ALX4:0.576871276801;PAX5:0.557398470974;MZF1:0.555905713276;EN1,2:0.551132826377;HAND1,2:0.54731615727;ARID5B:0.524200507775;PATZ1:0.51900596582;NR6A1:0.509530109723;TFAP2B:0.505907849888;HBP1_HMGB_SSRP1_UBTF:0.48047193298;RXR{A,B,G}:0.437668855108;TBP:0.435112431718;POU6F1:0.424788293588;MEF2{A,B,C,D}:0.408969757838;HLF:0.403544402892;TBX4,5:0.399380907619;NANOG{mouse}:0.395092306997;PAX6:0.345637634907;GFI1B:0.34464498359;NKX3-2:0.299590066403;NFE2L2:0.289722550881;ZNF384:0.287017896764;FOX{D1,D2}:0.281410636771;TGIF1:0.273199201754;HNF4A_NR2F1,2:0.262057860927;PAX4:0.175601132696;SOX17:0.160499896184;CEBPA,B_DDIT3:0.141584728319;ADNP_IRX_SIX_ZHX:0.117353186756;ZBTB6:0.112263607582;SREBF1,2:0.112058003734;FOXP3:0.0874311121791;AHR_ARNT_ARNT2:0.0812255489559;FOX{I1,J2}:0.0595079028519;HNF1A:0.0577348095703;REST:0.0363709491324;FOXD3:0.0134816184369;PRDM1:-0.000475677042322;NR1H4:-0.000893450415027;ELK1,4_GABP{A,B1}:-0.00451312622879;HOXA9_MEIS1:-0.0381355748044;AIRE:-0.0510872513604;IRF1,2:-0.0549779545047;POU3F1..4:-0.0900009051298;ZNF143:-0.0947063426106;MED-1{core}:-0.0949992419781;TLX2:-0.134539849108;ATF2:-0.138497814517;MYB:-0.153221964729;NFIL3:-0.154857899347;NRF1:-0.170306673084;XCPE1{core}:-0.174751233601;EGR1..3:-0.198584052603;RREB1:-0.201550417926;YY1:-0.208548809587;BACH2:-0.214462423758;SOX2:-0.221559683784;EP300:-0.227895956695;SP1:-0.232533944941;STAT5{A,B}:-0.234818940363;JUN:-0.243742408251;ZIC1..3:-0.251108125233;PPARG:-0.262767560736;NKX6-1,2:-0.298540735738;FOSL2:-0.30189749117;T:-0.337415846671;PAX2:-0.379965806674;PAX3,7:-0.381636730966;DMAP1_NCOR{1,2}_SMARC:-0.390138517424;NFE2:-0.393456095863;ATF5_CREB3:-0.39596387617;FOS_FOS{B,L1}_JUN{B,D}:-0.398416584803;GFI1:-0.411786597097;CRX:-0.414534778383;ZFP161:-0.423333036843;PRRX1,2:-0.434250338461;ETS1,2:-0.45776758402;TOPORS:-0.462809744005;ATF4:-0.47307711397;ZBTB16:-0.483658336385;RFX1:-0.495131544244;ELF1,2,4:-0.505359299824;FOXM1:-0.532998513745;IKZF2:-0.550719555214;BREu{core}:-0.567608082127;FOXN1:-0.570333806493;IRF7:-0.573876644269;RUNX1..3:-0.579811979812;NFKB1_REL_RELA:-0.599385710722;TFDP1:-0.599470465525;BPTF:-0.608832576942;SPI1:-0.620241762801;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.633329516314;CREB1:-0.656883853213;RBPJ:-0.659002808292;SPIB:-0.705293092049;POU5F1:-0.713565197464;NR5A1,2:-0.731685108353;ONECUT1,2:-0.750315890913;GATA6:-0.76651980286;RFX2..5_RFXANK_RFXAP:-0.784964915264;NKX2-3_NKX2-5:-0.78605426468;RORA:-0.795083675413;NANOG:-0.811594033205;FOXP1:-0.829598301067;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.866580441821;NFY{A,B,C}:-0.880237959338;VSX1,2:-0.88085400778;PAX8:-0.910544152673;LMO2:-0.936265690199;OCT4_SOX2{dimer}:-0.974042873141;FOX{F1,F2,J1}:-0.980809229382;LEF1_TCF7_TCF7L1,2:-0.985646753826;SNAI1..3:-0.999176341906;CUX2:-1.00259672917;POU1F1:-1.05357405281;PITX1..3:-1.07525139958;ZEB1:-1.10259353233;E2F1..5:-1.17217268802;CDX1,2,4:-1.23871676119;PDX1:-1.27876702773;SOX{8,9,10}:-1.28761172313;PBX1:-1.38924763916;FOXQ1:-1.42088620778;MYOD1:-1.49606461583;ALX1:-1.98251304133;POU2F1..3:-2.0045810072
|top_motifs=IKZF1:2.56973078124;GZF1:2.44935904462;SRF:2.0620361035;EBF1:2.03559188307;MYBL2:2.00408596847;HIF1A:2.00178844074;TEF:1.90890462459;HES1:1.87989008662;FOXL1:1.86628049992;MAFB:1.85194849542;HMGA1,2:1.75450211178;NKX3-1:1.68839623809;TEAD1:1.6744233037;ZNF238:1.66105551654;NR3C1:1.65621617312;GCM1,2:1.63831487074;SMAD1..7,9:1.62722417001;XBP1:1.62060583572;ATF6:1.61613125656;FOXO1,3,4:1.53904364618;RXRA_VDR{dimer}:1.49025090435;TAL1_TCF{3,4,12}:1.45142461236;UFEwm:1.44446317247;NKX2-2,8:1.381149845;ESR1:1.3597800941;NFE2L1:1.3531667175;NFATC1..3:1.34590293762;NKX2-1,4:1.30918779801;ZNF423:1.30556032344;TLX1..3_NFIC{dimer}:1.28151411265;HOX{A5,B5}:1.27635824669;GLI1..3:1.27370420603;EVI1:1.27365798175;SPZ1:1.25702818364;HOX{A6,A7,B6,B7}:1.19339508726;TFAP4:1.19188925701;KLF4:1.11812595654;NHLH1,2:1.11319172169;MTE{core}:1.11277903394;MAZ:1.11261491236;AR:1.08864101019;TP53:1.07744022001;LHX3,4:1.07735339435;DBP:1.07161682948;HSF1,2:1.03701156296;NFIX:0.973030912043;HOX{A4,D4}:0.950631694511;GTF2I:0.895094524407;MTF1:0.800393448396;GATA4:0.758536187057;CDC5L:0.732787187157;bHLH_family:0.722831184322;HMX1:0.717769106334;TFAP2{A,C}:0.717395799311;TFCP2:0.700391116728;GTF2A1,2:0.66993205707;HIC1:0.665809500798;ESRRA:0.645043852218;FOXA2:0.631543816002;ZNF148:0.631092784529;PAX1,9:0.625626857497;STAT1,3:0.622686959149;MYFfamily:0.599619249793;STAT2,4,6:0.59053424145;SOX5:0.584304330327;ALX4:0.576871276801;PAX5:0.557398470974;MZF1:0.555905713276;EN1,2:0.551132826377;HAND1,2:0.54731615727;ARID5B:0.524200507775;PATZ1:0.51900596582;NR6A1:0.509530109723;TFAP2B:0.505907849888;HBP1_HMGB_SSRP1_UBTF:0.48047193298;RXR{A,B,G}:0.437668855108;TBP:0.435112431718;POU6F1:0.424788293588;MEF2{A,B,C,D}:0.408969757838;HLF:0.403544402892;TBX4,5:0.399380907619;NANOG{mouse}:0.395092306997;PAX6:0.345637634907;GFI1B:0.34464498359;NKX3-2:0.299590066403;NFE2L2:0.289722550881;ZNF384:0.287017896764;FOX{D1,D2}:0.281410636771;TGIF1:0.273199201754;HNF4A_NR2F1,2:0.262057860927;PAX4:0.175601132696;SOX17:0.160499896184;CEBPA,B_DDIT3:0.141584728319;ADNP_IRX_SIX_ZHX:0.117353186756;ZBTB6:0.112263607582;SREBF1,2:0.112058003734;FOXP3:0.0874311121791;AHR_ARNT_ARNT2:0.0812255489559;FOX{I1,J2}:0.0595079028519;HNF1A:0.0577348095703;REST:0.0363709491324;FOXD3:0.0134816184369;PRDM1:-0.000475677042322;NR1H4:-0.000893450415027;ELK1,4_GABP{A,B1}:-0.00451312622879;HOXA9_MEIS1:-0.0381355748044;AIRE:-0.0510872513604;IRF1,2:-0.0549779545047;POU3F1..4:-0.0900009051298;ZNF143:-0.0947063426106;MED-1{core}:-0.0949992419781;TLX2:-0.134539849108;ATF2:-0.138497814517;MYB:-0.153221964729;NFIL3:-0.154857899347;NRF1:-0.170306673084;XCPE1{core}:-0.174751233601;EGR1..3:-0.198584052603;RREB1:-0.201550417926;YY1:-0.208548809587;BACH2:-0.214462423758;SOX2:-0.221559683784;EP300:-0.227895956695;SP1:-0.232533944941;STAT5{A,B}:-0.234818940363;JUN:-0.243742408251;ZIC1..3:-0.251108125233;PPARG:-0.262767560736;NKX6-1,2:-0.298540735738;FOSL2:-0.30189749117;T:-0.337415846671;PAX2:-0.379965806674;PAX3,7:-0.381636730966;DMAP1_NCOR{1,2}_SMARC:-0.390138517424;NFE2:-0.393456095863;ATF5_CREB3:-0.39596387617;FOS_FOS{B,L1}_JUN{B,D}:-0.398416584803;GFI1:-0.411786597097;CRX:-0.414534778383;ZFP161:-0.423333036843;PRRX1,2:-0.434250338461;ETS1,2:-0.45776758402;TOPORS:-0.462809744005;ATF4:-0.47307711397;ZBTB16:-0.483658336385;RFX1:-0.495131544244;ELF1,2,4:-0.505359299824;FOXM1:-0.532998513745;IKZF2:-0.550719555214;BREu{core}:-0.567608082127;FOXN1:-0.570333806493;IRF7:-0.573876644269;RUNX1..3:-0.579811979812;NFKB1_REL_RELA:-0.599385710722;TFDP1:-0.599470465525;BPTF:-0.608832576942;SPI1:-0.620241762801;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.633329516314;CREB1:-0.656883853213;RBPJ:-0.659002808292;SPIB:-0.705293092049;POU5F1:-0.713565197464;NR5A1,2:-0.731685108353;ONECUT1,2:-0.750315890913;GATA6:-0.76651980286;RFX2..5_RFXANK_RFXAP:-0.784964915264;NKX2-3_NKX2-5:-0.78605426468;RORA:-0.795083675413;NANOG:-0.811594033205;FOXP1:-0.829598301067;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.866580441821;NFY{A,B,C}:-0.880237959338;VSX1,2:-0.88085400778;PAX8:-0.910544152673;LMO2:-0.936265690199;OCT4_SOX2{dimer}:-0.974042873141;FOX{F1,F2,J1}:-0.980809229382;LEF1_TCF7_TCF7L1,2:-0.985646753826;SNAI1..3:-0.999176341906;CUX2:-1.00259672917;POU1F1:-1.05357405281;PITX1..3:-1.07525139958;ZEB1:-1.10259353233;E2F1..5:-1.17217268802;CDX1,2,4:-1.23871676119;PDX1:-1.27876702773;SOX{8,9,10}:-1.28761172313;PBX1:-1.38924763916;FOXQ1:-1.42088620778;MYOD1:-1.49606461583;ALX1:-1.98251304133;POU2F1..3:-2.0045810072
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11473-119C6;search_select_hide=table117:FF:11473-119C6
}}
}}

Latest revision as of 18:03, 4 June 2020

Name:Adipocyte - omental, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11054
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueNA
dev stageNA
sexNA
ageNA
cell typeNA
cell lineNA
companyNA
collaborationNA
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.5

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005241
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11054 CAGE DRX008097 DRR008969
Accession ID Hg19

Library idBAMCTSS
CNhs11054 DRZ000394 DRZ001779
Accession ID Hg38

Library idBAMCTSS
CNhs11054 DRZ011744 DRZ013129
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005241
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10012.CGATGT sRNA-Seq DRX037183 DRR041549
Accession ID Hg19

Library idBAMCTSS
SRhi10012.CGATGT DRZ007191


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0974
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.381
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.718
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0.393
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.078
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0588
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.0573
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.382
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.177
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0.459
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.195
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.266
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.108
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0.628
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.921
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0573
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.356
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.549
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.593
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.183
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.298
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.108
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0.108
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.688
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.656
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.628
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.911
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.0573
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.752
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11054

Jaspar motifP-value
MA0002.20.111
MA0003.10.323
MA0004.10.148
MA0006.10.161
MA0007.10.225
MA0009.10.0749
MA0014.10.185
MA0017.10.302
MA0018.22.19295e-4
MA0019.10.48
MA0024.13.17883e-6
MA0025.10.0246
MA0027.10.631
MA0028.10.065
MA0029.10.692
MA0030.10.796
MA0031.10.688
MA0035.20.0368
MA0038.10.13
MA0039.20.00404
MA0040.10.222
MA0041.10.488
MA0042.10.671
MA0043.10.0251
MA0046.10.435
MA0047.20.639
MA0048.10.999
MA0050.10.00107
MA0051.10.296
MA0052.10.702
MA0055.10.181
MA0057.10.767
MA0058.10.105
MA0059.10.257
MA0060.11.72376e-7
MA0061.14.75088e-5
MA0062.28.29203e-7
MA0065.20.255
MA0066.10.883
MA0067.10.0585
MA0068.10.0509
MA0069.10.0345
MA0070.10.906
MA0071.10.988
MA0072.10.849
MA0073.10.957
MA0074.10.678
MA0076.10.0127
MA0077.10.318
MA0078.10.465
MA0079.20.759
MA0080.27.90806e-7
MA0081.10.0162
MA0083.17.18246e-5
MA0084.10.493
MA0087.10.575
MA0088.10.788
MA0090.15.78656e-8
MA0091.10.147
MA0092.10.00781
MA0093.10.158
MA0099.27.73522e-6
MA0100.10.938
MA0101.15.44188e-7
MA0102.20.45
MA0103.17.30434e-6
MA0104.20.00255
MA0105.14.05193e-4
MA0106.10.689
MA0107.13.16792e-6
MA0108.20.00395
MA0111.10.408
MA0112.20.111
MA0113.10.0347
MA0114.10.41
MA0115.10.00127
MA0116.10.366
MA0117.10.533
MA0119.10.268
MA0122.10.849
MA0124.10.318
MA0125.10.44
MA0131.10.289
MA0135.10.295
MA0136.11.34458e-8
MA0137.20.401
MA0138.20.183
MA0139.10.214
MA0140.10.297
MA0141.10.22
MA0142.10.0363
MA0143.10.962
MA0144.10.429
MA0145.10.15
MA0146.10.527
MA0147.10.00726
MA0148.10.369
MA0149.10.401
MA0150.10.0211
MA0152.10.00185
MA0153.10.728
MA0154.10.759
MA0155.10.291
MA0156.13.40913e-7
MA0157.10.481
MA0159.10.604
MA0160.10.062
MA0162.10.174
MA0163.10.435
MA0164.10.993
MA0258.10.655
MA0259.10.172



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11054

Novel motifP-value
10.212
100.586
1000.917
1010.46
1020.0154
1030.977
1040.873
1050.111
1060.671
1070.552
1080.491
1090.25
110.258
1100.451
1110.581
1120.824
1130.0605
1140.759
1150.0604
1160.349
1170.135
1180.054
1190.0672
120.607
1200.306
1210.615
1220.255
1230.0083
1240.587
1250.157
1260.53
1270.0826
1280.692
1290.888
130.315
1300.392
1310.11
1320.475
1330.522
1340.303
1350.575
1360.449
1370.742
1380.167
1390.811
140.246
1400.17
1410.466
1420.382
1430.278
1440.936
1450.19
1460.998
1470.255
1480.93
1496.02375e-4
150.551
1500.766
1510.778
1520.0677
1530.127
1540.593
1550.017
1560.186
1570.698
1580.00148
1590.493
160.0468
1600.775
1610.122
1620.513
1630.0486
1640.754
1650.704
1660.0847
1670.274
1680.864
1690.0736
170.661
180.767
190.0233
20.161
200.204
210.606
220.344
230.464
240.358
250.307
260.341
270.814
280.169
290.113
30.742
300.285
310.951
326.27981e-12
330.511
340.919
350.748
360.0782
370.627
380.272
390.108
40.39
400.0802
410.759
420.3
430.839
440.774
450.84
460.411
470.44
480.37
490.398
50.486
500.696
510.398
520.614
530.146
540.842
550.64
560.311
570.76
580.415
590.431
60.541
600.954
610.221
620.427
630.884
640.232
650.773
660.142
670.673
680.916
690.736
70.386
700.673
710.73
720.358
730.139
740.347
750.515
760.201
770.155
780.271
790.257
80.47
800.601
810.846
820.898
830.649
840.0987
850.0677
860.414
870.273
880.684
890.456
90.391
900.891
910.384
920.344
930.964
940.423
950.494
960.838
970.288
980.231
990.0689



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11054


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000325 (stuff accumulating cell)
0000255 (eukaryotic cell)
0000136 (fat cell)
0002615 (adipocyte of omentum tissue)

UBERON: Anatomy
0000468 (multi-cellular organism)
0003688 (omentum)
0002100 (trunk)
0002384 (connective tissue)
0000479 (tissue)
0000064 (organ part)
0000466 (immaterial anatomical entity)
0000062 (organ)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0004457 (cavity lining)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0004923 (organ component layer)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002323 (body cavity)
0000042 (serous membrane)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0002417 (abdominal segment of trunk)
0002358 (peritoneum)
0000916 (abdomen)
0003684 (abdominal cavity)
0001178 (visceral peritoneum)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000039 (human adipocyte of omentum tissue sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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