FF:11739-123F2: Difference between revisions

Latest revision as of 18:16, 4 June 2020

Name:	Mouse Neurons - hippocampal, donor2
Species:	Mouse (Mus musculus)
Library ID:	CNhs12359
Sample type:	primary cells
Genomic View:	UCSC
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	hippocampus
dev stage	NA
sex	NA
age	NA
cell type	neuron
cell line	NA
company	Sciencell/3H
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	RNAMNh2
catalog number	custom
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004948

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12359		CAGE		DRX008838		DRR009710

Accession ID Mm9

Library id		BAM		CTSS
CNhs12359		DRZ001135		DRZ002520

Accession ID Mm10

Library id		BAM		CTSS
CNhs12359		DRZ012485		DRZ013870

Download raw sequence, BAM & CTSS

Mm9

Fasta	BAM	CTSS
download	download	donwload

Mm10

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

CNhs12359

0	0
1	0.197
10	0
100	0.644
1000	-0.0172
1001	-0.0749
1002	0.331
1003	0.0693
1004	0.0397
1005	-0.193
1006	0.158
1007	0.0694
1008	0
1009	-0.2
101	-0.12
1010	0
1011	0.133
1012	0
1013	-0.177
1014	0
1015	0.401
1016	0.105
1017	0
1018	0
1019	0
102	0
1020	0.519
1021	0.197
1022	-0.124
1023	0
1024	-0.166
1025	-0.0611
1026	0
1027	0.506
1028	0
1029	-0.143
103	-0.0829
1030	0
1031	-0.511
1032	-0.184
1033	0.00967
1034	0
1035	0
1036	-0.0917
1037	0
1038	0.1
1039	-0.272
104	0
1040	-0.176
1041	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12359

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00184
MA0003.1	MA0003.1	0.123
MA0004.1	MA0004.1	0.791
MA0006.1	MA0006.1	0.0762
MA0007.1	MA0007.1	0.209
MA0009.1	MA0009.1	0.85
MA0014.1	MA0014.1	0.291
MA0017.1	MA0017.1	1.12608e-5
MA0018.2	MA0018.2	0.0176
MA0019.1	MA0019.1	0.316
MA0024.1	MA0024.1	0.00552
MA0025.1	MA0025.1	0.228
MA0027.1	MA0027.1	0.713
MA0028.1	MA0028.1	0.667
MA0029.1	MA0029.1	0.695
MA0030.1	MA0030.1	0.263
MA0031.1	MA0031.1	0.0578
MA0035.2	MA0035.2	0.111
MA0038.1	MA0038.1	0.0685
MA0039.2	MA0039.2	0.00464
MA0040.1	MA0040.1	0.976
MA0041.1	MA0041.1	0.303
MA0042.1	MA0042.1	0.66
MA0043.1	MA0043.1	0.0121
MA0046.1	MA0046.1	3.13136e-10
MA0047.2	MA0047.2	5.05943e-4
MA0048.1	MA0048.1	0.948
MA0050.1	MA0050.1	5.6446e-9
MA0051.1	MA0051.1	9.60025e-4
MA0052.1	MA0052.1	8.95073e-4
MA0055.1	MA0055.1	0.847
MA0057.1	MA0057.1	0.0569
MA0058.1	MA0058.1	0.739
MA0059.1	MA0059.1	0.828
MA0060.1	MA0060.1	1.07697e-9
MA0061.1	MA0061.1	0.0561
MA0062.2	MA0062.2	0.991
MA0065.2	MA0065.2	4.10713e-5
MA0066.1	MA0066.1	0.332
MA0067.1	MA0067.1	0.837
MA0068.1	MA0068.1	0.505
MA0069.1	MA0069.1	0.15
MA0070.1	MA0070.1	0.523
MA0071.1	MA0071.1	0.321
MA0072.1	MA0072.1	0.222
MA0073.1	MA0073.1	0.891
MA0074.1	MA0074.1	0.518
MA0076.1	MA0076.1	0.169
MA0077.1	MA0077.1	0.00177
MA0078.1	MA0078.1	0.00513
MA0079.2	MA0079.2	0.707
MA0080.2	MA0080.2	8.40341e-11
MA0081.1	MA0081.1	0.486
MA0083.1	MA0083.1	2.65846e-5
MA0084.1	MA0084.1	0.704
MA0087.1	MA0087.1	0.513
MA0088.1	MA0088.1	0.372
MA0090.1	MA0090.1	0.00817
MA0091.1	MA0091.1	0.501
MA0092.1	MA0092.1	0.207
MA0093.1	MA0093.1	0.785
MA0099.2	MA0099.2	6.63132e-5
MA0100.1	MA0100.1	0.688
MA0101.1	MA0101.1	0.171
MA0102.2	MA0102.2	0.678
MA0103.1	MA0103.1	0.0755
MA0104.2	MA0104.2	0.315
MA0105.1	MA0105.1	0.114
MA0106.1	MA0106.1	0.153
MA0107.1	MA0107.1	0.0914
MA0108.2	MA0108.2	0.0057
MA0111.1	MA0111.1	0.953
MA0112.2	MA0112.2	2.43408e-4
MA0113.1	MA0113.1	0.715
MA0114.1	MA0114.1	1.33087e-4
MA0115.1	MA0115.1	0.0591
MA0116.1	MA0116.1	0.186
MA0117.1	MA0117.1	0.795
MA0119.1	MA0119.1	0.153
MA0122.1	MA0122.1	0.845
MA0124.1	MA0124.1	0.83
MA0125.1	MA0125.1	0.203
MA0131.1	MA0131.1	0.594
MA0135.1	MA0135.1	0.386
MA0136.1	MA0136.1	3.70079e-7
MA0137.2	MA0137.2	0.0853
MA0138.2	MA0138.2	0.776
MA0139.1	MA0139.1	0.228
MA0140.1	MA0140.1	0.00348
MA0141.1	MA0141.1	0.0142
MA0142.1	MA0142.1	0.00435
MA0143.1	MA0143.1	9.71555e-4
MA0144.1	MA0144.1	0.0473
MA0145.1	MA0145.1	0.0154
MA0146.1	MA0146.1	0.0717
MA0147.1	MA0147.1	0.386
MA0148.1	MA0148.1	1.47577e-5
MA0149.1	MA0149.1	0.0648
MA0150.1	MA0150.1	0.0296
MA0152.1	MA0152.1	0.416
MA0153.1	MA0153.1	1.54527e-8
MA0154.1	MA0154.1	0.0284
MA0155.1	MA0155.1	0.723
MA0156.1	MA0156.1	3.50178e-4
MA0157.1	MA0157.1	0.0303
MA0159.1	MA0159.1	0.0046
MA0160.1	MA0160.1	0.0967
MA0162.1	MA0162.1	0.363
MA0163.1	MA0163.1	0.0165
MA0164.1	MA0164.1	0.968
MA0258.1	MA0258.1	0.0119
MA0259.1	MA0259.1	0.368

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12359

Novel motif	Logo	P-value
1	1	0.21
10	10	0.233
100	100	0.889
101	101	0.912
102	102	0.943
103	103	0.0815
104	104	0.945
105	105	0.306
106	106	0.00294
107	107	0.018
108	108	0.617
109	109	0.00372
11	11	0.112
110	110	0.222
111	111	0.0389
112	112	0.00647
113	113	0.831
114	114	0.16
115	115	0.314
116	116	0.584
117	117	0.312
118	118	0.523
119	119	0.175
12	12	0.498
120	120	0.825
121	121	0.361
122	122	0.704
123	123	0.726
124	124	0.69
125	125	0.371
126	126	0.245
127	127	0.14
128	128	0.0219
129	129	0.149
13	13	2.8111e-5
130	130	0.866
131	131	0.392
132	132	0.961
133	133	0.307
134	134	0.439
135	135	0.126
136	136	0.0654
137	137	0.318
138	138	0.5
139	139	0.131
14	14	0.569
140	140	0.425
141	141	0.126
142	142	0.128
143	143	0.761
144	144	0.909
145	145	0.0918
146	146	0.448
147	147	0.885
148	148	0.415
149	149	0.0941
15	15	0.201
150	150	0.213
151	151	0.373
152	152	0.0202
153	153	0.837
154	154	0.886
155	155	0.652
156	156	0.00462
157	157	0.183
158	158	0.298
159	159	0.036
160	160	0.3
161	161	0.418
162	162	0.761
163	163	0.144
164	164	0.0314
165	165	0.0109
166	166	0.677
167	167	0.667
168	168	0.589
169	169	0.00734
17	17	0.0228
18	18	0.697
19	19	0.0332
2	2	0.47
20	20	0.875
21	21	0.619
22	22	0.0633
23	23	0.211
24	24	0.0516
25	25	0.674
26	26	0.00343
27	27	0.638
28	28	0.386
29	29	0.352
3	3	0.13
30	30	0.449
31	31	0.792
32	32	0.271
33	33	0.353
34	34	0.526
35	35	0.377
36	36	0.848
37	37	0.0097
38	38	0.422
39	39	0.204
4	4	0.553
40	40	0.294
41	41	0.904
42	42	0.393
43	43	0.177
44	44	0.693
45	45	0.364
46	46	0.194
47	47	0.212
48	48	0.185
49	49	0.218
5	5	0.185
50	50	0.282
51	51	0.552
52	52	0.0465
53	53	0.484
54	54	0.534
55	55	0.943
56	56	0.319
57	57	0.794
58	58	0.268
59	59	0.0671
6	6	0.671
60	60	0.0088
61	61	0.308
62	62	0.162
63	63	0.129
64	64	0.933
65	65	0.372
66	66	0.57
67	67	0.72
68	68	0.662
69	69	0.525
7	7	0.0418
70	70	0.0246
71	71	0.0475
72	72	0.326
73	73	0.0102
74	74	0.276
75	75	0.151
76	76	0.976
77	77	0.17
78	78	0.0523
79	79	0.506
8	8	0.271
80	80	0.936
81	81	0.296
82	82	0.0374
83	83	0.0456
84	84	0.922
85	85	0.0364
86	86	0.326
87	87	0.33
88	88	0.449
89	89	0.175
9	9	0.335
90	90	0.392
91	91	0.247
92	92	0.113
93	93	0.0215
94	94	0.892
95	95	0.0654
96	96	0.277
97	97	0.838
98	98	0.718
99	99	0.178

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12359

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000202 mouse hippocampal neuron sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000540 (neuron)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0002319 (neural cell)
0000117 (CNS neuron (sensu Vertebrata))
0000393 (electrically responsive cell)
0000211 (electrically active cell)
0000404 (electrically signaling cell)
0000255 (eukaryotic cell)
0002609 (neuron of cerebral cortex)
0002608 (hippocampal neuron)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000955 (brain)
0001954 (Ammon's horn)
0000956 (cerebral cortex)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0002619 (regional part of cerebral cortex)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0003022 (lobe parts of cerebral cortex)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0002421 (hippocampal formation)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)
0000349 (limbic system)
0002600 (limbic lobe)

FF: FANTOM5
0000102 (sample by type)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000201 (hippocampal neuron sample)
0000203 (mouse neuron samples)
0000202 (mouse hippocampal neuron sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000133 (neurectodermal cell)
CL:0000337 (neuroblast (sensu Vertebrata))
CL:0000031 (neuroblast)
CL:0000221 (ectodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000025,UBERON:0000033,UBERON:0000061,UBERON:0000062,UBERON:0000064,UBERON:0000073,UBERON:0000153,UBERON:0000349,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000922,UBERON:0000923,UBERON:0000924,UBERON:0000955,UBERON:0000956,UBERON:0001016,UBERON:0001017,UBERON:0001049,UBERON:0001062,UBERON:0001869,UBERON:0001890,UBERON:0001893,UBERON:0001954,UBERON:0002050,UBERON:0002346,UBERON:0002421,UBERON:0002532,UBERON:0002600,UBERON:0002616,UBERON:0002619,UBERON:0002780,UBERON:0002791,UBERON:0003022,UBERON:0003056,UBERON:0003075,UBERON:0003080,UBERON:0004121,UBERON:0005068,UBERON:0005291,UBERON:0005423,UBERON:0005743,UBERON:0006598,UBERON:0007135,UBERON:0007284
+|DRA_sample_Accession=CAGE@SAMD00004948
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000031,CL:0000034,CL:0000047,CL:0000048,CL:0000055,CL:0000117,CL:0000133,CL:0000144,CL:0000211,CL:0000220,CL:0000221,CL:0000255,CL:0000337,CL:0000393,CL:0000404,CL:0000540,CL:0000548,CL:0000723,CL:0002319,CL:0002321,CL:0002371,CL:0002608
+|accession_numbers=CAGE;DRX008838;DRR009710;DRZ001135;DRZ002520;DRZ012485;DRZ013870
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000955,UBERON:0001954,UBERON:0000956,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0002619,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0003022,UBERON:0010317,UBERON:0001017,UBERON:0002421,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0000349,UBERON:0002600
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000540,CL:0000003,CL:0000548,CL:0002371,CL:0002319,CL:0000117,CL:0000393,CL:0000211,CL:0000404,CL:0000255,CL:0002609,CL:0002608
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000002,FF:0000101,FF:0000103,FF:0000001,FF:0000201,FF:0000203,FF:0000202
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr1:42752574..42752621,+!p@chr1:42752574..42752621,+!2.42!330.48!Pou3f3;;chr2:71384802..71384815,-!p1@Dlx2!2.38!291.66!Dlx2;;chrX:90531838..90531861,+!p1@Arx!2.34!270.67!Arx;;chr6:55631042..55631102,-!p1@Neurod6!2.25!176.64!Neurod6;;chr12:28027561..28027591,-!p1@Sox11!2.11!793.79!Sox11;;chr8:12395603..12395621,+!p1@Sox1!2.09!122.78!Sox1;;chr11:98190918..98190951,-!p1@Neurod2!2.04!108.31!Neurod2;;chr10:86956396..86956411,-!p1@Ascl1!2.00!148.56!Ascl1;;chr2:61642631..61642684,+!p1@Tbr1!1.97!92.68!Tbr1;;chr6:6832076..6832092,-!p1@Dlx5!1.92!94.41!Dlx5;;chr2:73109983..73109996,+!p1@Sp9!1.86!71.69!Sp9;;chrX:108009761..108009788,+!p1@Pou3f4!1.86!71.02!Pou3f4;;chr3:34548909..34548927,+!p1@Sox2!1.85!116.64!Sox2;;chr2:71367871..71367898,+!p1@Dlx1!1.78!59.52!Dlx1;;chr2:146047829..146047847,+!p1@Insm1!1.77!100.93!Insm1;;chr2:71367142..71367167,+!p2@Dlx1!1.77!57.60!Dlx1;;chr1:179374784..179374800,+!p2@Zfp238!1.70!57.60!Zfp238;;chr15:76352832..76352900,-!p1@Scrt1!1.70!48.79!Scrt1;;chr2:71366660..71366702,+!p3@Dlx1!1.67!46.01!Dlx1;;chr2:71384458..71384526,-!p2@Dlx2!1.64!43.13!Dlx2;;chr7:30088977..30089002,+!p2@Dpf1!1.63!57.41!Dpf1;;chr3:95032091..95032183,-!p1@Mllt11!1.61!325.49!Mllt11;;chr5:98609885..98609900,+!p1@Prdm8!1.59!38.05!Prdm8;;chr12:30213247..30213333,+!p1@Myt1l!1.57!35.85!Myt1l;;chr7:30092993..30093076,+!p1@Dpf1!1.52!54.54!Dpf1;;chr2:73110004..73110016,+!p2@Sp9!1.52!32.49!Sp9;;chr12:109242266..109242295,-!p1@Bcl11b!1.50!245.56!Bcl11b;;chr2:35959541..35959548,-!p2@Lhx6!1.49!30.19!Lhx6;;chrX:58146612..58146615,-!p1@Sox3!1.47!28.18!Sox3;;chr16:91225808..91225824,+!p1@Olig2!1.45!27.12!Olig2;;chr7:116154364..116154444,+!p1@Tub!1.44!44.47!Tub;;chr2:38206744..38206766,+!p1@Lhx2!1.43!31.44!Lhx2;;chr3:34548946..34548972,+!p2@Sox2!1.43!28.37!Sox2;;chr3:127336052..127336058,+!p1@Neurog2!1.43!25.97!Neurog2;;chr17:86020510..86020589,+!p3@Six3!1.41!24.54!Six3;;chr4:124334894..124334899,+!p1@Pou3f1!1.40!30.96!Pou3f1;;chr4:154335024..154335039,+!p1@Hes5!1.40!29.33!Hes5;;chr5:75471615..75471622,+!p1@Gsx2!1.39!23.77!Gsx2;;chr17:25707623..25707639,-!p1@Sox8!1.38!95.65!Sox8;;chr2:61642558..61642595,+!p3@Tbr1!1.38!23.19!Tbr1;;chr13:117099847..117099907,-!p1@Isl1!1.37!41.31!Isl1;;chr2:61642743..61642758,+!p2@Tbr1!1.37!22.33!Tbr1;;chr1:57028125..57028149,-!p2@Satb2!1.36!21.95!Satb2;;chr12:50483639..50483654,+!p1@Foxg1!1.35!21.57!Foxg1;;chr17:86020156..86020183,+!p1@Six3!1.35!21.18!Six3;;chr9:118387300..118387317,+!p1@Eomes!1.34!20.99!Eomes;;chr2:115891534..115891589,-!p1@Meis2!1.33!277.19!Meis2;;chr12:109241852..109241873,-!p4@Bcl11b!1.33!24.25!Bcl11b;;chr15:76352740..76352781,-!p5@Scrt1!1.33!20.51!Scrt1;;chr2:151907546..151907561,+!p1@Scrt2!1.31!19.55!Scrt2;;chr2:79296783..79296801,-!p1@Neurod1!1.30!19.07!Neurod1;;chr11:23978111..23978134,+!p3@Bcl11a!1.29!38.53!Bcl11a;;chr12:54349410..54349461,+!p1@Npas3!1.29!22.14!Npas3;;chr17:48015839..48015915,-!p3@Foxp4!1.28!21.47!Foxp4;;chr6:6831950..6831985,-!p2@Dlx5!1.27!19.55!Dlx5;;chr7:91558472..91558512,-!p2@Arnt2!1.25!23.87!Arnt2;;chr2:65683890..65683907,+!p1@Csrnp3!1.24!31.05!Csrnp3;;chr2:38206580..38206600,+!p2@Lhx2!1.24!20.13!Lhx2;;chr4:150503457..150503498,-!p3@Camta1!1.24!18.31!Camta1;;chr10:42303385..42303401,-!p1@Nr2e1!1.23!15.91!Nr2e1;;chr11:23977742..23977794,+!p6@Bcl11a!1.21!18.79!Bcl11a;;chr2:71368786..71368813,+!p5@Dlx1!1.21!15.14!Dlx1;;chr2:71368815..71368836,+!p4@Dlx1!1.19!14.57!Dlx1;;chr6:6831928..6831949,-!p3@Dlx5!1.19!14.57!Dlx5;;chr2:71367979..71367993,+!p7@Dlx1!1.19!14.47!Dlx1;;chr8:12395500..12395511,+!p5@Sox1!1.19!14.47!Sox1;;chr11:23980664..23980706,+!p2@Bcl11a!1.17!58.94!Bcl11a;;chrX:108009734..108009752,+!p2@Pou3f4!1.17!13.80!Pou3f4;;chr4:22415443..22415506,-!p1@Pou3f2!1.16!13.32!Pou3f2;;chr7:25292160..25292213,+!p3@Zfp428!1.15!32.87!Zfp428;;chr11:23978291..23978323,+!p7@Bcl11a!1.15!13.13!Bcl11a;;chr13:78338076..78338104,-!p4@Nr2f1!1.14!15.91!Nr2f1;;chr11:23978229..23978268,+!p8@Bcl11a!1.14!14.57!Bcl11a;;chr12:109241728..109241781,-!p2@Bcl11b!1.14!13.71!Bcl11b;;chr14:118636238..118636257,-!p2@Sox21!1.14!12.84!Sox21;;chr2:181501745..181501778,+!p1@Myt1!1.14!12.75!Myt1;;chr1:169528457..169528482,+!p3@Rxrg!1.13!12.36!Rxrg;;chr6:6813269..6813272,+!p2@Dlx6!1.13!12.36!Dlx6;;chr16:91270004..91270023,+!p1@Olig1!1.12!14.09!Olig1;;chr17:37140628..37140631,+!p2@Zfp57!1.11!23.77!Zfp57;;chr19:7342725..7342784,+!p1@Rcor2!1.10!48.02!Rcor2;;chr12:30219426..30219506,+!p2@Myt1l!1.10!11.69!Myt1l;;chr8:12395629..12395644,+!p6@Sox1!1.10!11.69!Sox1;;chr17:86020115..86020128,+!p2@Six3!1.10!11.50!Six3;;chr2:115890953..115890974,-!p6@Meis2!1.08!16.58!Meis2;;chr13:78339382..78339420,-!p3@Nr2f1!1.08!13.03!Nr2f1;;chr11:23978270..23978290,+!p9@Bcl11a!1.08!11.12!Bcl11a;;chr1:42752654..42752665,+!p@chr1:42752654..42752665,+!1.08!10.93!Pou3f3;;chr11:80196900..80196917,+!p3@Zfp207!1.07!36.52!Zfp207;;chr2:181501710..181501742,+!p2@Myt1!1.07!10.83!Myt1;;chr13:29045559..29045574,-!p1@Sox4!1.06!868.36!Sox4;;chr7:91558392..91558434,-!p1@Arnt2!1.06!29.23!Arnt2;;chr2:151907338..151907360,+!p2@Scrt2!1.06!10.35!Scrt2;;chr9:21420744..21420755,+!p3@Smarca4!1.05!29.90!Smarca4;;chr19:7342786..7342803,+!p2@Rcor2!1.05!13.71!Rcor2;;chr19:59533221..59533271,+!p1@Emx2!1.05!12.75!Emx2;;chr12:50485973..50486015,+!p2@Foxg1!1.05!10.26!Foxg1;;chr11:98190955..98190968,-!p2@Neurod2!1.05!10.16!Neurod2;;chr17:37139472..37139514,+!p1@Zfp57!1.04!68.63!Zfp57;;chr12:3891753..3891801,+!p4@Dnmt3a!1.04!16.29!Dnmt3a;;chr13:44936126..44936164,+!p6@Jarid2!1.04!11.60!Jarid2;;chr7:25292141..25292158,+!p2@Zfp428!1.03!34.89!Zfp428;;chr4:13670499..13670526,+!p2@Runx1t1!1.03!21.66!Runx1t1;;chr2:71384193..71384205,-!p5@Dlx2!1.03!9.78!Dlx2;;chr15:76352677..76352737,-!p3@Scrt1!1.03!9.78!Scrt1;;chr7:30089006..30089022,+!p3@Dpf1!1.03!9.78!Dpf1;;chr1:189821714..189821761,+!p1@Esrrg!1.02!17.73!Esrrg;;chr4:54957886..54957907,+!p3@Zfp462!1.02!16.68!Zfp462;;chr12:50483663..50483678,+!p3@Foxg1!1.02!9.58!Foxg1;;chr10:42303452..42303470,-!p2@Nr2e1!1.02!9.49!Nr2e1;;chr3:34549096..34549111,+!p3@Sox2!1.02!9.49!Sox2;;chr2:71366574..71366587,+!p8@Dlx1!1.02!9.39!Dlx1;;chr19:19185671..19185693,-!p1@Rorb!1.01!22.24!Rorb;;chr12:3891810..3891829,+!p2@Dnmt3a!1.01!14.66!Dnmt3a;;chr1:179374820..179374831,+!p3@Zfp238!1.01!9.20!Zfp238;;chr6:144152648..144152680,-!p5@Sox5!1.01!9.20!Sox5;;chr13:48356475..48356492,+!p1@Id4!1.00!199.65!Id4;;chr11:21901608..21901634,-!p1@Otx1!1.00!9.11!Otx1;;chr4:150482563..150482655,-!p2@Camta1!0.99!32.01!Camta1;;chr8:92872242..92872285,-!p1@Tox3!0.99!23.00!Tox3;;chr2:152223783..152223812,-!p4@Sox12!0.99!20.61!Sox12;;chr13:78339428..78339466,-!p2@Nr2f1!0.99!12.08!Nr2f1;;chr6:144157924..144157955,-!p2@Sox5!0.99!11.12!Sox5;;chr12:12948633..12948651,-!p1@Mycn!0.98!83.48!Mycn;;chr2:181498020..181498040,+!p5@Myt1!0.98!8.63!Myt1;;chr1:57028157..57028173,-!p3@Satb2!0.98!8.63!Satb2;;chr1:169528520..169528542,+!p2@Rxrg!0.98!8.53!Rxrg;;chr3:17954233..17954249,+!p1@Bhlhe22!0.98!8.53!Bhlhe22;;chr2:71384425..71384456,-!p4@Dlx2!0.98!8.53!Dlx2;;chr7:25292331..25292421,+!p1@Zfp428!0.97!61.82!Zfp428;;chr8:12395670..12395682,+!p3@Sox1!0.97!8.43!Sox1;;chr6:6812962..6812979,+!p1@Dlx6!0.97!8.24!Dlx6;;chr15:75447105..75447159,+!p1@Zfp41!0.96!33.55!Zfp41;;chr9:18278055..18278126,-!p1@Zfp558!0.96!23.96!Zfp558;;chr2:71384401..71384424,-!p3@Dlx2!0.96!8.15!Dlx2;;chr4:22415600..22415616,-!p3@Pou3f2!0.96!8.05!Pou3f2;;chrX:108009798..108009815,+!p3@Pou3f4!0.96!8.05!Pou3f4;;chr12:109242296..109242307,-!p3@Bcl11b!0.95!11.69!Bcl11b;;chr6:38204274..38204327,-!p3@D630045J12Rik!0.94!15.81!D630045J12Rik;;chr6:38204214..38204267,-!p4@D630045J12Rik!0.94!14.95!D630045J12Rik;;chr13:78339476..78339515,-!p1@Nr2f1!0.94!11.98!Nr2f1;;chr13:29045321..29045337,-!p2@Sox4!0.93!10.26!Sox4;;chr5:122345353..122345358,-!p5@Cux2!0.93!7.57!Cux2;;chr5:24104751..24104773,-!p5@Smarcd3!0.93!7.48!Smarcd3;;chr3:101814061..101814094,+!p1@Nhlh2!0.93!7.48!Nhlh2;;chr19:59244875..59244895,-!p2@Vax1!0.93!7.48!Vax1;;chr1:57029281..57029326,-!p1@Satb2!0.92!11.69!Satb2;;chr2:71366714..71366725,+!p12@Dlx1!0.92!7.28!Dlx1;;chr14:118636214..118636235,-!p1@Sox21!0.91!8.72!Sox21;;chr12:109241804..109241823,-!p5@Bcl11b!0.91!7.19!Bcl11b;;chr4:119960301..119960359,-!p1@Foxo6!0.90!23.48!Foxo6;;chr1:169528491..169528505,+!p4@Rxrg!0.90!7.00!Rxrg;;chr2:105515635..105515661,+!p5@Pax6!0.90!7.00!Pax6;;chr13:44936077..44936096,+!p9@Jarid2!0.89!6.81!Jarid2;;chr12:28027256..28027282,-!p2@Sox11!0.89!6.81!Sox11;;chr5:148000254..148000260,+!p1@Gsx1!0.89!6.71!Gsx1;;chr15:75447162..75447217,+!p2@Zfp41!0.88!20.22!Zfp41;;chr2:56967334..56967366,-!p1@Nr4a2!0.88!13.99!Nr4a2;;chr9:106356278..106356292,+!p3@Pcbp4!0.88!11.60!Pcbp4;;chr11:44431016..44431045,+!p5@Ebf1!0.88!9.49!Ebf1;;chr4:22415290..22415307,-!p2@Pou3f2!0.88!6.52!Pou3f2;;chr4:122673278..122673336,+!p1@Mycl1!0.87!21.28!Mycl1;;chr1:179374764..179374776,+!p5@Zfp238!0.87!6.42!Zfp238;;chr2:35960919..35960954,-!p1@Lhx6!0.86!12.17!Lhx6;;chr3:95032197..95032208,-!p3@Mllt11!0.86!7.96!Mllt11;;chr2:151906844..151906873,+!p3@Scrt2!0.86!6.33!Scrt2;;chr6:6812988..6813002,+!p3@Dlx6!0.86!6.23!Dlx6;;chr12:57636240..57636256,-!p4@Nkx2-1!0.86!6.23!Nkx2-1;;chr15:100325682..100325698,-!p1@Csrnp2!0.85!29.71!Csrnp2;;chr15:100430414..100430470,-!p1@Pou6f1!0.85!20.13!Pou6f1;;chr2:115891521..115891532,-!p8@Meis2!0.85!9.01!Meis2;;chr2:181501988..181502026,+!p3@Myt1!0.85!6.13!Myt1;;chr8:12395874..12395885,+!p2@Sox1!0.85!6.13!Sox1;;chr2:71384541..71384555,-!p6@Dlx2!0.85!6.13!Dlx2;;chr1:179374862..179374873,+!p6@Zfp238!0.85!6.04!Zfp238;;chr14:13178361..13178386,-!p2@Fezf2!0.85!6.04!Fezf2;;chr1:169528581..169528607,+!p7@Rxrg!0.84!5.94!Rxrg;;chr2:71367855..71367864,+!p6@Dlx1!0.84!5.94!Dlx1;;chr1:57028606..57028625,-!p4@Satb2!0.84!5.85!Satb2;;chr15:99532709..99532743,+!p1@Smarcd1!0.83!159.10!Smarcd1;;chr7:130644017..130644092,-!p1@Zkscan2!0.83!11.69!Zkscan2;;chr2:65683842..65683856,+!p3@Csrnp3!0.83!5.75!Csrnp3;;chr15:76353005..76353021,-!p2@Scrt1!0.83!5.75!Scrt1;;chr5:39075982..39076052,-!p1@Zfp518b!0.82!43.03!Zfp518b;;chr11:23978078..23978096,+!p4@Bcl11a!0.82!18.31!Bcl11a;;ch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chr2:152223441..152223465,-!p2@Sox12!0.32!7.19!Sox12;;chr19:5424822..5424845,-!p3@Drap1!0.32!6.81!Drap1;;chr11:97524415..97524455,+!p2@Mllt6!0.32!6.52!Mllt6;;chr15:76181718..76181729,+!p3@Maf1!0.32!3.83!Maf1;;chr2:126501253..126501268,-!p3@Gabpb1!0.32!3.45!Gabpb1;;chr4:154010940..154010962,-!p3@Prdm16!0.32!3.45!Prdm16;;chr5:22940353..22940372,+!p3@Mll5!0.32!2.88!Mll5;;chr11:58717721..58717738,-!p2@Zfp39!0.32!2.88!Zfp39;;chr9:96159147..96159204,+!p2@Tfdp2!0.32!2.78!Tfdp2;;chr7:134169648..134169657,-!p14@Maz!0.32!1.92!Maz;;chr4:149610794..149610876,+!p2@LOC100045967,p2@LOC100503183,p3@Eno1,p3@Gm5506!0.32!1.82!Eno1;;chr5:107003725..107003746,-!p5@Zfp644!0.32!1.73!Zfp644;;chr8:81923375..81923380,-!p6@Smad1!0.32!1.73!Smad1;;chr7:123177120..123177138,-!p10@Sox6!0.32!1.53!Sox6;;chr14:52936049..52936057,-!p6@Sall2!0.32!1.53!Sall2;;chr1:136456791..136456810,+!p1@Kdm5b!0.31!66.33!Kdm5b;;chr10:22451112..22451136,-!p1@Tbpl1!0.31!44.18!Tbpl1;;chr15:76181777..76181802,+!p2@Maf1!0.31!29.90!Maf1;;chr7:134376741..134376831,+!p1@Zfp553!0.31!23.58!Zfp553;;chr17:28314075..28314159,+!p1@Zfp523!0.31!22.04!Zfp523;;chr9:36954842..36954908,-!p1@Pknox2!0.31!20.89!Pknox2;;chr5:138596922..138596968,-!p1@Zfp113!0.31!17.73!Zfp113;;chr2:164860321..164860359,-!p2@Ncoa5!0.31!12.17!Ncoa5;;chr14:98568761..98568814,-!p2@Dach1!0.31!11.98!Dach1;;chr4:102787317..102787364,+!p3@Mier1!0.31!9.97!Mier1;;chr14:52634412..52634500,-!p2@Zfp219!0.31!7.86!Zfp219;;chr1:170362335..170362356,-!p4@Pbx1!0.31!7.76!Pbx1;;chr18:83080305..83080335,+!p2@Zfp516!0.31!5.08!Zfp516;;chr12:110031207..110031224,+!p5@Yy1!0.31!4.70!Yy1;;chr6:117791276..117791304,+!p2@Zfp637!0.31!4.60!Zfp637;;chr4:133276698..133276743,-!p6@Arid1a!0.31!4.50!Arid1a;;chr6:51382677..51382783,+!p1@Nfe2l3!0.31!4.03!Nfe2l3;;chr7:148513548..148513560,-!p7@Deaf1!0.31!2.11!Deaf1;;chr11:99092280..99092302,-!p3@Smarce1!0.31!2.11!Smarce1;;chr18:69504229..69504240,+!p16@Tcf4!0.31!1.63!Tcf4;;chr1:140739014..140739032,-!p1@Lhx9!0.31!1.53!Lhx9;;chr1:179372543..179372557,+!p9@Zfp238!0.31!1.05!Zfp238;;chr6:144157869..144157876,-!p26@Sox5!0.31!1.05!Sox5;;chr14:13178294..13178303,-!p7@Fezf2!0.31!1.05!Fezf2;;chr7:91520957..91520973,-!p9@Arnt2!0.31!1.05!Arnt2;;chr4:150482353..150482386,-!p6@Camta1!0.31!1.05!Camta1;;chr4:13678684..13678704,+!p17@Runx1t1!0.31!1.05!Runx1t1;;chr3:101814037..101814046,+!p2@Nhlh2!0.31!1.05!Nhlh2;;chr11:121121297..121121369,+!p1@Foxk2!0.30!105.33!Foxk2;;chr18:60720384..60720450,+!p1@Rbm22!0.30!92.30!Rbm22;;chr3:96001503..96001557,-!p1@Bola1!0.30!38.34!Bola1;;chr2:126501197..126501245,-!p1@Gabpb1!0.30!13.13!Gabpb1;;chr1:191994550..191994623,-!p1@Prox1!0.30!11.98!Prox1;;chr10:127707562..127707597,+!p2@Stat2!0.30!8.43!Stat2;;chr17:51952617..51952680,-!p3@Satb1!0.30!8.43!Satb1;;chr1:120949949..120950000,-!p1@Gli2!0.30!7.19!Gli2;;chr2:126501274..126501308,-!p2@Gabpb1!0.30!6.71!Gabpb1;;chr15:75799717..75799742,+!p1@Zfp707!0.30!6.42!Zfp707;;chr6:117813087..117813121,+!p1@Zfp239!0.30!6.13!Zfp239;;chr9:20385740..20385777,+!p2@Zfp846!0.30!5.85!Zfp846;;chr7:134489096..134489123,-!p2@Zfp768!0.30!4.89!Zfp768;;chr18:74375772..74375799,+!p2@Cxxc1!0.30!4.50!Cxxc1;;chr4:87678743..87678767,-!p7@Mllt3!0.30!3.55!Mllt3;;chr14:17407878..17407926,-!p1@Rarb!0.30!3.26!Rarb;;chr14:52935788..52935817,-!p2@Sall2!0.30!3.16!Sall2;;chr12:119540395..119540415,-!p5@Sp4!0.30!1.92!Sp4;;chr19:5423800..5423821,-!p5@Drap1!0.30!1.92!Drap1;;chr8:90483433..90483457,-!p2@Zfp423!0.30!1.63!Zfp423;;chr6:14851250..14851277,+!p4@Foxp2!0.30!1.53!Foxp2;;chr4:150513630..150513686,-!p4@Camta1!0.30!1.25!Camta1;;chr18:69752638..69752665,+!p19@Tcf4!0.30!1.15!Tcf4;;chr1:120950149..120950160,-!p7@Gli2!0.30!1.15!Gli2;;chr13:58503480..58503510,-!p3@Hnrnpk!0.29!91.63!Hnrnpk;;chr17:13897509..13897607,+!p1@Mllt4!0.29!51.66!Mllt4;;chr8:77517558..77517597,+!p1@Hmgxb4!0.29!38.63!Hmgxb4;;chr19:5424768..5424811,-!p2@Drap1!0.29!32.97!Drap1;;chr13:53076396..53076452,-!p1@Nfil3!0.29!31.53!Nfil3;;chr7:24866907..24866967,+!p1@LOC676710,p1@Zfp180!0.29!22.33!Zfp180;;chr10:127984778..127984824,-!p1@Zc3h10!0.29!19.07!Zc3h10;;chr3:14578609..14578687,+!p1@E2f5!0.29!16.39!E2f5;;chr11:87881569..87881633,+!p2@Vezf1!0.29!13.13!Vezf1;;chr7:17200422..17200487,-!p3@Grlf1!0.29!10.64!Grlf1;;chr11:98821749..98821799,+!p2@Rara!0.29!10.45!Rara;;chr8:112603610..112603656,+!p1@Zfp612!0.29!7.38!Zfp612;;chr19:28085586..28085622,-!p3@Rfx3!0.29!6.90!Rfx3;;chr11:50700965..50701027,-!p1@Zfp454!0.29!5.56!Zfp454;;chr7:16986617..16986632,+!p2@Zc3h4!0.29!4.31!Zc3h4;;chr10:20880731..20880775,-!p2@Myb!0.29!2.97!Myb;;chr1:120950197..120950215,-!p5@Gli2!0.29!1.63!Gli2;;chr1:64167889..64167898,-!p8@Klf7!0.29!1.53!Klf7;;chr4:133309775..133309784,-!p15@Arid1a!0.29!1.44!Arid1a;;chr10:128083021..128083044,-!p2@Ikzf4!0.29!1.15!Ikzf4;;chr12:109241897..109241915,-!p6@Bcl11b!0.29!0.96!Bcl11b;;chr4:135728311..135728342,+!p3@E2f2!0.29!0.96!E2f2;;chr4:97248652..97248671,+!p19@Nfia!0.29!0.96!Nfia;;chr5:106887474..106887489,-!p1@Barhl2!0.29!0.96!Barhl2;;chr6:85137505..85137517,+!p2@Emx1!0.29!0.96!Emx1;;c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+|ffid_belonging_in_development=CL:0000133,CL:0000337,CL:0000031,CL:0000221
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 36: / Line 42: @@
 |has_quality=
 |id=FF:11739-123F2
-|is_a=EFO:0002091;;FF:0000002;;FF:0000103;;FF:0000202
+|is_a=EFO:0002091;;FF:0000202
+|is_obsolete=
+|library_id=CNhs12359
+|library_id_phase_based=2:CNhs12359
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;11739
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;11739
+|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.primary_cell.hCAGE/Mouse%2520Neurons%2520-%2520hippocampal%252c%2520donor2.CNhs12359.11739-123F2.mm10.nobarcode.bam
+|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.primary_cell.hCAGE/Mouse%2520Neurons%2520-%2520hippocampal%252c%2520donor2.CNhs12359.11739-123F2.mm10.nobarcode.ctss.bed.gz
+|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.hCAGE/Mouse%2520Neurons%2520-%2520hippocampal%252c%2520donor2.CNhs12359.11739-123F2.mm9.nobarcode.bam
+|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.hCAGE/Mouse%2520Neurons%2520-%2520hippocampal%252c%2520donor2.CNhs12359.11739-123F2.mm9.ctss.bed.gz
+|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.hCAGE/Mouse%2520Neurons%2520-%2520hippocampal%252c%2520donor2.CNhs12359.11739-123F2.mm9.nobarcode.rdna.fa.gz
 |name=Mouse Neurons - hippocampal, donor2
 |namespace=FANTOM5
@@ Line 42: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12359,LSID914,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|repeat_enrich_byfamily=0.0281611700684223,0,0,0,0,0,-0.386604414212124,0,0,0,0,-0.0843392403965415,0,0,0,0,0,0,0.0310618638378009,0,0,0,0,0,0,0,0,0,0,0,0,0.341937957886655,-0.558422792324031,0,0,0,0,0,-0.118977024888816,0.189754685028268,-0.207516388722866,0.063438037262426,1.01367318410592,0.197300638916896,0,0,0,0,0,0,0,0,0,0,0,-0.0660055475634404,0,0,0,0,0.0333166832311545,0,0,0,0,0,-0.177501745486845,-0.270901340249097,-0.118341725680794,-0.0365549964709893,0,-0.0780086007519514,0.109759520249235,0.0397493170902889,0.140942084123731,0,0.0373954666182461,-0.00522906253712176,0.263220750481354,-0.0788315948399074,0,0,0,0,0,0,0.0804559446490739,-0.0115999806699705,0.158064963522584,0,0,0.0761636383140293,0.327917003966498,0
 |rna_box=123
 |rna_catalog_number=custom
@@ Line 57: / Line 76: @@
 |rna_weight_ug=10
 |sample_age=
+|sample_category=primary cells
 |sample_cell_catalog=N/A
 |sample_cell_line=
@@ Line 76: / Line 96: @@
 |sample_tissue=hippocampus
 |top_motifs=LHX3,4:3.91808672278;SOX2:2.95368636198;FOXQ1:2.62323145861;OCT4_SOX2{dimer}:2.37211297424;LEF1_TCF7_TCF7L1,2:2.28614976243;NKX6-1,2:2.19559138352;SOX{8,9,10}:2.10092970798;TFDP1:2.10051135589;MZF1:2.09856382143;POU5F1:2.04310200949;PRRX1,2:1.97255743538;BREu{core}:1.92957172445;MED-1{core}:1.91415148391;NANOG{mouse}:1.85118891363;SOX17:1.85111867781;POU6F1:1.81854319875;NRF1:1.77584266674;POU3F1..4:1.71355285533;FOXM1:1.69200864909;PRDM1:1.63205471154;YY1:1.62883817218;EN1,2:1.62705404558;ADNP_IRX_SIX_ZHX:1.61352113909;ZFP161:1.60330059149;HOX{A4,D4}:1.6013814171;NANOG:1.52898071494;ZNF143:1.51715170975;AHR_ARNT_ARNT2:1.51688831997;POU2F1..3:1.50761106988;KLF4:1.45707648221;VSX1,2:1.4434011622;UFEwm:1.43480516688;NKX2-3_NKX2-5:1.36367031877;NFY{A,B,C}:1.35077942675;ONECUT1,2:1.34346679188;ZNF384:1.32453252677;RREB1:1.29179481953;MTE{core}:1.17383586225;PPARG:1.16916664579;CDX1,2,4:1.10425043358;TFAP2B:1.07023726653;PATZ1:1.06055729906;ZBTB6:1.05202335005;PAX4:1.01230912118;EGR1..3:1.01063706369;RFX1:0.990011915916;PAX8:0.978639618663;ELK1,4_GABP{A,B1}:0.954290932568;T:0.916325187928;CDC5L:0.905096651658;HOX{A5,B5}:0.885230236458;REST:0.867985495887;FOXD3:0.833678348229;RORA:0.833463194273;RBPJ:0.823519240859;SMAD1..7,9:0.823370801616;HMGA1,2:0.810505971656;JUN:0.808757366612;EP300:0.808550010545;PAX6:0.796646717816;FOXL1:0.791960408698;HMX1:0.775195729026;HOXA9_MEIS1:0.75045324983;POU1F1:0.732036842477;RFX2..5_RFXANK_RFXAP:0.731993214457;ZNF423:0.68360901919;NFE2L1:0.654889675194;GFI1:0.643062652108;SOX5:0.62682061389;NHLH1,2:0.617901780687;NR5A1,2:0.612196484242;GTF2I:0.588472060763;HES1:0.586859064506;ATF5_CREB3:0.586333028268;HIC1:0.573712899597;E2F1..5:0.567438190197;LMO2:0.557575478512;ZBTB16:0.537266507182;ALX1:0.502231215563;ZIC1..3:0.501638770989;STAT1,3:0.46007274283;NFIX:0.45137847075;PAX1,9:0.430355154933;GFI1B:0.424718443709;DBP:0.412681061518;GZF1:0.412134149794;PBX1:0.355169101064;CREB1:0.338427867582;ATF2:0.334477632273;CUX2:0.313423162991;MAZ:0.283726157408;NR3C1:0.28187593298;HBP1_HMGB_SSRP1_UBTF:0.263009638757;MYB:0.256838850843;EVI1:0.19763741618;PITX1..3:0.187874009803;NKX3-2:0.177179114971;SPZ1:0.166236734774;NKX2-1,4:0.162509343146;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0720095061834;GATA4:0.0656737279897;GTF2A1,2:0.0541011738962;STAT5{A,B}:0.0437511379578;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0278990093274;TLX2:0.0271132014272;HAND1,2:0.0204944155021;CRX:0.0151346129782;GCM1,2:0.00902952509119;MYFfamily:-0.0221267281468;BPTF:-0.0568869420252;TEF:-0.0780658267004;ATF4:-0.109938334622;NKX2-2,8:-0.11382059024;TOPORS:-0.127269626841;RXR{A,B,G}:-0.13299614119;FOX{F1,F2,J1}:-0.162016955093;TGIF1:-0.164060942733;FOX{I1,J2}:-0.217314708134;FOXO1,3,4:-0.228892512256;IKZF2:-0.236819491442;NR6A1:-0.277859089469;TLX1..3_NFIC{dimer}:-0.287976560927;AIRE:-0.303209533775;ARID5B:-0.312244710834;PDX1:-0.320188987279;PAX5:-0.324916105522;MTF1:-0.419102245201;SPIB:-0.421914306727;MAFB:-0.423674515154;TFAP4:-0.468258727089;TAL1_TCF{3,4,12}:-0.479678909942;NR1H4:-0.488523159229;FOXP3:-0.49452129161;RUNX1..3:-0.501535413775;HLF:-0.517131440795;FOXP1:-0.534115263589;ELF1,2,4:-0.574163845268;HNF4A_NR2F1,2:-0.576291231139;HSF1,2:-0.593495426796;NFIL3:-0.594180068345;bHLH_family:-0.597467732235;SPI1:-0.604744692952;IKZF1:-0.612119682782;ESR1:-0.616586375402;MEF2{A,B,C,D}:-0.644357208894;SP1:-0.665988767528;NKX3-1:-0.671286126604;SNAI1..3:-0.671787244239;MYOD1:-0.676810045243;HNF1A:-0.677772166991;ZNF238:-0.686176981752;NFKB1_REL_RELA:-0.689409820663;GLI1..3:-0.692322135353;ALX4:-0.705320792937;GATA6:-0.719105093408;TFAP2{A,C}:-0.73861894225;ZEB1:-0.765658172523;FOXN1:-0.777950577614;ESRRA:-0.786179199084;FOXA2:-0.815552504097;TBP:-0.820287311025;PAX2:-0.843578302737;CEBPA,B_DDIT3:-0.847300834905;HIF1A:-0.861064720737;XCPE1{core}:-0.879537857881;NFE2:-0.880627363411;TP53:-0.89145409133;DMAP1_NCOR{1,2}_SMARC:-0.901658672044;AR:-0.981215931731;TBX4,5:-0.985165551086;SREBF1,2:-1.02282923082;FOS_FOS{B,L1}_JUN{B,D}:-1.04735618962;NFATC1..3:-1.07854536024;ETS1,2:-1.08698458437;BACH2:-1.09967802737;ZNF148:-1.11335387475;RXRA_VDR{dimer}:-1.15177741173;TEAD1:-1.16679938526;MYBL2:-1.1733685259;NFE2L2:-1.18166245719;EBF1:-1.28306442052;FOX{D1,D2}:-1.30438815505;IRF1,2:-1.40525720292;FOSL2:-1.44271513348;TFCP2:-1.51517253422;IRF7:-1.57386433485;SRF:-1.69398140016;STAT2,4,6:-1.72051982633;ATF6:-1.98790990356
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:11739-123F2;search_select_hide=table117:11739-123F2
 }}

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FF:11739-123F2: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:16, 4 June 2020

CNhs12359

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0